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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020413 ID=TCONS_00020413|Name=TCONS_00020413|organism=Clytia hemisphaerica|type=transcript|length=780bp
NCTTCTCTCTACACCACCTGATGTTTCTTCCAAAAAATTTCCCAAACTGG
ATTTATCAGTACTGTGTTCAGACAAGATGAAAAATAAGATCGTCAACCAG
AGGAAACTTTGTCTATTTTacgaaaaaacaacatcaaagaCAATCATGGA
AACTCCAAAGACATCACAAATCAGATCAACAGAGATTCTACCGACCATCA
AAACCGTTAAACCTGAAATTTCAACCGAAAAATACATTATAACTGAAAAA
CCATTAATAAATACACGGCAAAGCACTAAAATGGCAACAAATTCTAACGA
AAAGACTTTCACATTGCCTACACCAGTGGAAAATTCTATATATAAAACTC
CAACACCAAAAACTTCTAAAATAAGCACTTCAACAAAAAGTGCTGATAGT
TTAAAAGCAACAAATAGACTAGCTACTCGAAGCACTTCAAGCTCAACGAC
GAAATTGAGAACTAAACCAGAGGAAAAGCCTACCAGAACTACTCCTGATG
ATGGACTATTGAACAATGAAGTCGAGCAGACTCAAAATGCCAATATCAAG
CGATCCGCATCGTACAACTCCAGCGGGACAGCGCTGGGATTCTCGGTAGC
ACAGCTCACAAGTTATGTTTTCTTACTGGTATTTTGTTTGACCTTATTTA
TGTAAATATTATGTTTcctattgtatattttttatgtttcgtTATCTGAA
GAAGAATCACATGTTTTATATGTAAAGTAAAGACACCAAAGTAAAAATTA
CTATCGCTGCAAATTTTGCTTCATCTTTTC Run BLAST on NCBI transcript from alignment at sc0000356:209711..211154+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020413 ID=TCONS_00020413|Name=TCONS_00020413|organism=Clytia hemisphaerica|type=transcript|length=1444bp|location=Sequence derived from alignment at sc0000356:209711..211154+ (Clytia hemisphaerica)
NCTTCTCTCTACACCACCTGATGTTTCTTCCAAAAAATGTAAGTCGAAAT
CATTAACACAGCCTTGTCTCAGTGACTTGGTGAGGGTGGTGCTcacacgt
tcttttataagaacatccaatatttttgaagccttggttgttcttaacat
tttttagttttaagcctaaaaatgctcttaacatgtttttattttcgcca
ttttttgagtaatttttttatcggtattttagagtccgcaaagccttaaa
atgtttttaacttgttcttacaTAATTGACCATCTAAGCCTTgcgttctt
atatagtttgttcttataaagaaaaaacgtgtaatagagGGGGCAATGTC
AGTACTCTTTTGCTTTTATAACAAGTGAGATGAAACGAAGGAACTAAATG
CTGTGACGGAACTAGAAAATCTCTTACTTTTAGTGGTTTGGGTTTTATAT
TTCATTGTTTACGGATCAGAAATCAAGTGGAAATTCTGAAACTTTCCTTA
TCTTCAAAGTGAGGAGCTCGGTGTTAGTTTCGAAGAGAAATAAAATGTGT
TGCATTTAGAATGTCGATGTTCGGCCAATTAAAGCTTATACGTTTATGCT
TGTAAAACGTGTGTCGGACAAAGTCCCCTTCTCTACGAAACCTCTGGAAA
CCTTTCTTTCTTAATGTCTTTCGTTAATAAtatattttattctatttttc
agTTCCCAAACTGGATTTATCAGTACTGTGTTCAGACAAGATGAAAAATA
AGATCGTCAACCAGAGGAAACTTTGTCTATTTTacgaaaaaacaacatca
aagaCAATCATGGAAACTCCAAAGACATCACAAATCAGATCAACAGAGAT
TCTACCGACCATCAAAACCGTTAAACCTGAAATTTCAACCGAAAAATACA
TTATAACTGAAAAACCATTAATAAATACACGGCAAAGCACTAAAATGGCA
ACAAATTCTAACGAAAAGACTTTCACATTGCCTACACCAGTGGAAAATTC
TATATATAAAACTCCAACACCAAAAACTTCTAAAATAAGCACTTCAACAA
AAAGTGCTGATAGTTTAAAAGCAACAAATAGACTAGCTACTCGAAGCACT
TCAAGCTCAACGACGAAATTGAGAACTAAACCAGAGGAAAAGCCTACCAG
AACTACTCCTGATGATGGACTATTGAACAATGAAGTCGAGCAGACTCAAA
ATGCCAATATCAAGCGATCCGCATCGTACAACTCCAGCGGGACAGCGCTG
GGATTCTCGGTAGCACAGCTCACAAGTTATGTTTTCTTACTGGTATTTTG
TTTGACCTTATTTATGTAAATATTATGTTTcctattgtatattttttatg
tttcgtTATCTGAAGAAGAATCACATGTTTTATATGTAAAGTAAAGACAC
CAAAGTAAAAATTACTATCGCTGCAAATTTTGCTTCATCTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020413-exon-sc0000356-1491911889:209711..209748 | TCONS_00020413-exon-sc0000356-1491911889:209711..209748 | Clytia hemisphaerica | exon |
| TCONS_00020413-exon-sc0000356-1510915933:209711..209748 | TCONS_00020413-exon-sc0000356-1510915933:209711..209748 | Clytia hemisphaerica | exon |
| TCONS_00020413-exon-sc0000356-1575043694:209711..209748 | TCONS_00020413-exon-sc0000356-1575043694:209711..209748 | Clytia hemisphaerica | exon |
| TCONS_00020413-exon-sc0000356-1491911889:210413..211154 | TCONS_00020413-exon-sc0000356-1491911889:210413..211154 | Clytia hemisphaerica | exon |
| TCONS_00020413-exon-sc0000356-1510915933:210413..211154 | TCONS_00020413-exon-sc0000356-1510915933:210413..211154 | Clytia hemisphaerica | exon |
| TCONS_00020413-exon-sc0000356-1575043694:210413..211154 | TCONS_00020413-exon-sc0000356-1575043694:210413..211154 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:209711..211154 + |
Blast
The following BLAST results are available for this feature:
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