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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020725 ID=TCONS_00020725|Name=TCONS_00020725|organism=Clytia hemisphaerica|type=transcript|length=789bp
GCCTTAGATGTTATGAATATGGCAAATCCCTCGATCAACTTACTAAAGAC
ATTGGCAAATCCAACAAACCTGTTCTGGAATCAACTTTAGCCTACCTGAA
AGTCGAAAACCAAGAACAATATGTAAAATCAGCAAATGTCAATGCACTAA
TTTGCAGACAACAAAATCTCCTTCCTGACGAATGCTCATTATGTAATGAG
ACATATTGCTTCAAAATCGAAGACACTCCATTGCATGTGTCTTTTGTGGC
CAAGAAGTCCATCGTAAATGCTACCTTCAACTCCTTGGTGCAACAACAAT
GGAATTTGACACTGCTTCCTTCAAAAAGACTTTCAACCCTTTCAATCTCC
CTGGACTTTACTACGTCTGTCAACCCTGTGAACTAACCAAAATCCCACAA
GATGACTgtggaaaaaagaaaaggttcATAAATAATAAAGATTCTACACC
ACCTACCCAGCCAGAATTAAACAGCCCTCCAGAAACCCAAAGACAAAACC
AATTCACCAACTTACCCTACCAACCAATACCAGATCTTCCCAATCGACAA
ATAGAAAGAATCTATCCAGATCTTGAGAATATTGATcaaatcAATCTCCT
TGATGAGGACTTAACAGAAATACCTGCACCAGACTTTCCCAAAGAAACCC
GCAAAAAGACATCTGCACCAGACCAGACCAAGGACGATCAAATTGAACAA
ACTGCACCAAATTCACCCAAAGGCAATGACAACCAAACATTGCTTCAAAA
GGAGAAGACCTGTCGTTTCTACGTTAAAGGGAATTGCAA Run BLAST on NCBI protein sequence of TCONS_00020725-protein >TCONS_00020725-protein ID=TCONS_00020725-protein|Name=TCONS_00020725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MEFDTASFKKTFNPFNLPGLYYVCQPCELTKIPQDDCGKKKRFINNKDST
PPTQPELNSPPETQRQNQFTNLPYQPIPDLPNRQIERIYPDLENIDQINL
LDEDLTEIPAPDFPKETRKKTSAPDQTKDDQIEQTAPNSPKGNDNQTLLQ
KEKTCRFYVKGNC Run BLAST on NCBI transcript from alignment at sc0000365:152312..153516+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020725 ID=TCONS_00020725|Name=TCONS_00020725|organism=Clytia hemisphaerica|type=transcript|length=1205bp|location=Sequence derived from alignment at sc0000365:152312..153516+ (Clytia hemisphaerica)
GCCTTAGATGTTATGAATATGGCAAATCCCTCGATCAACTTACTAAAGAC
ATTGGCAAATCCAACAAACCTGTTCTGGAATCAACTTTAGCCTACCTGAA
AGTCGAAAACCAAGAACAATATGTAAAATCAGCAAATGTCAATGCACTAA
TTTGCAGACAACAAAATCTCCTTCCTGACGAATGCTCATTATGTAATGAG
ACATATTGCTTCAAAATCGAAGACACTCCATTGCATGTGTCTTTTGTGGC
CAAGAAGTCCATCGTAAATGCTACCTTCAACTCCTTGGTGCAACAACAAT
GGAATTTGACACTGCTTCCTTCAAAAAGACTTTCAACCCTTTCAATCTCC
CTGGACTTTACTACGTCTGTCAACCCTGTGAACTAACCAAAATCCCACAA
GATGACTgtggaaaaaagaaaaggttcATAAATAATAAAGATTCTACACC
ACCTACCCAGCCAGAATTAAACAGCCCTCCAGAAACCCAAAGACAAAACC
AATTCACCAACTTACCCTACCAACCAATACCAGATCTTCCCAATCGACAA
ATAGAAAGAATCTATCCAGATCTTGAGAATATTGATcaaatcatagtata
agaaagccgcggcttgaatgatgacgctattgtttttgtcgtaAATGGAT
GTTCTATCTATGTCTTCgtggtttataagaactaagtcgaagctaacaaa
atccttaaccttaaaagtgttaataatattcaattgaagaacaatTACTT
TTCAAGTCTCAACTTTTTCTAACTATACTCTCTTATTACcttatttgaag
tatattttCNtgaatgcgtgaattatcaagagatttgcgtttatgagcaa
aattacATCTAACGAGGgagtttgttaaaagtcaaattaaattgacaatg
GAGATTGTCACTGCaccataaaaaaattcgttcttacgacaaagatagaa
caacagaaattcagctgtactcattccatccgcggctttcttatactatg
atcaAAACAATCTCCTTGATGAGGACTTAACAGAAATACCTGCACCAGAC
TTTCCCAAAGAAACCCGCAAAAAGACATCTGCACCAGACCAGACCAAGGA
CGATCAAATTGAACAAACTGCACCAAATTCACCCAAAGGCAATGACAACC
AAACATTGCTTCAAAAGGAGAAGACCTGTCGTTTCTACGTTAAAGGGAAT
TGCAA Coding sequence (CDS) from alignment at sc0000365:152312..153516+ >TCONS_00020725 ID=TCONS_00020725|Name=TCONS_00020725|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at sc0000365:152312..153516+ (Clytia hemisphaerica)
ATGGAATTTGACACTGCTTCCTTCAAAAAGACTTTCAACCCTTTCAATCT
CCCTGGACTTTACTACGTCTGTCAACCCTGTGAACTAACCAAAATCCCAC
AAGATGACTgtggaaaaaagaaaaggttcATAAATAATAAAGATTCTACA
CCACCTACCCAGCCAGAATTAAACAGCCCTCCAGAAACCCAAAGACAAAA
CCAATTCACCAACTTACCCTACCAACCAATACCAGATCTTCCCAATCGAC
AAATAGAAAGAATCTATCCAGATCTTGAGAATATTGATcaaatcAATCTC
CTTGATGAGGACTTAACAGAAATACCTGCACCAGACTTTCCCAAAGAAAC
CCGCAAAAAGACATCTGCACCAGACCAGACCAAGGACGATCAAATTGAAC
AAACTGCACCAAATTCACCCAAAGGCAATGACAACCAAACATTGCTTCAA
AAGGAGAAGACCTGTCGTTTCTACGTTAAAGGGAATTGCATGGAATTTGA
CACTGCTTCCTTCAAAAAGACTTTCAACCCTTTCAATCTCCCTGGACTTT
ACTACGTCTGTCAACCCTGTGAACTAACCAAAATCCCACAAGATGACTgt
ggaaaaaagaaaaggttcATAAATAATAAAGATTCTACACCACCTACCCA
GCCAGAATTAAACAGCCCTCCAGAAACCCAAAGACAAAACCAATTCACCA
ACTTACCCTACCAACCAATACCAGATCTTCCCAATCGACAAATAGAAAGA
ATCTATCCAGATCTTGAGAATATTGATcaaatcAATCTCCTTGATGAGGA
CTTAACAGAAATACCTGCACCAGACTTTCCCAAAGAAACCCGCAAAAAGA
CATCTGCACCAGACCAGACCAAGGACGATCAAATTGAACAAACTGCACCA
AATTCACCCAAAGGCAATGACAACCAAACATTGCTTCAAAAGGAGAAGAC
CTGTCGTTTCTACGTTAAAGGGAATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020725-exon-sc0000365-1491911889:152312..152903 | TCONS_00020725-exon-sc0000365-1491911889:152312..152903 | Clytia hemisphaerica | exon |
| TCONS_00020725-exon-sc0000365-1510915933:152312..152903 | TCONS_00020725-exon-sc0000365-1510915933:152312..152903 | Clytia hemisphaerica | exon |
| TCONS_00020725-exon-sc0000365-1575043694:152312..152903 | TCONS_00020725-exon-sc0000365-1575043694:152312..152903 | Clytia hemisphaerica | exon |
| TCONS_00020725-exon-sc0000365-1491911889:153320..153516 | TCONS_00020725-exon-sc0000365-1491911889:153320..153516 | Clytia hemisphaerica | exon |
| TCONS_00020725-exon-sc0000365-1510915933:153320..153516 | TCONS_00020725-exon-sc0000365-1510915933:153320..153516 | Clytia hemisphaerica | exon |
| TCONS_00020725-exon-sc0000365-1575043694:153320..153516 | TCONS_00020725-exon-sc0000365-1575043694:153320..153516 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000365 | supercontig | sc0000365:152312..153516 + |
Blast
The following BLAST results are available for this feature:
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