TCONS_00020870 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020870
Unique NameTCONS_00020870
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020870 ID=TCONS_00020870|Name=TCONS_00020870|organism=Clytia hemisphaerica|type=transcript|length=537bp
CCAACACGAAAACCGGTGACATGCTTAGCACAGAGGAGTATGGGAAGTAC
TGTGATGACATAGAGAATACTACCACGTGGGGTGGTCAACTAGAGATTCG
TGCGATATCGAACGTGTATCAACAAAGAGTGGAGATTTATCAAGACAACG
CTCCCAGGCTAGTGATCGGTGAAGAACATGTAGCCTCTACTCCTCTTCGA
TTATCGTAAGTTGCCTTTTTGATGTAAACTCTGATTTTAATTGTCGCCAA
AAACCAAAGGCCCCACACTGATAAAGTTTATAAAGCCTCTGACATTGCAA
TTTAATCTTTGACCTAGAAAGCGTTATGCTTAATATCTGGAATATGCTCA
GTCAGAGGCGTAGCCACGGGTTTTCGTTTCGGGGGGTgagattggaaaat
ttttgacctttttaggGGAAATTTTTGGAGAAGATTTTTCTCGTAACTTA
TGCGCCGCGGGCGTCAATTACTGCTCTAAGAAATCTCAAGTTGCTTAAAA
AAGAGGCATCTGAAGGTAAATGTTAGCGAGAGTAAGA
Run BLAST on NCBI

transcript from alignment at sc0000373:46248..47656+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020870 ID=TCONS_00020870|Name=TCONS_00020870|organism=Clytia hemisphaerica|type=transcript|length=1409bp|location=Sequence derived from alignment at sc0000373:46248..47656+ (Clytia hemisphaerica)
CCAACACGAAAACCGGTGACATGCTTAGCACAGGTGAGTTTTCAATGGTT
GTTGACTGttagaaagttttttgaaattactTACCTATCAAAGGTTCCAA
taccaataaaatattttgaagaatcaaactggttcttatttttatattta
aagcttttaaaaagGAAACGGTGAAAATCACGATTAAAAGCTTTCGCAAC
GCTCTCTTTTCGGTACTTCTAAAATAGAGTGCACCACCAGAAACGACAGC
CGATTTCAAACCACTATAAATCTTTTTcgacattttgaataattttgttt
ttgttacaGAGGAGTATGGGAAGTACTGTGATGACATAGAGAATACTACC
ACGTGGGGTGGTCAACTAGAGGTATGTTATTTCATTGTAAAGCTCATacc
gaggggggggggctactcGATTTCGAAATGACGGTATGTGCCGcacaaaa
tctgcttttcaaaatcgtacccttacagtgcagttcaatatggctgaaca
GGTACCCTTTCATTGCATTTTCTCATGATTTaaccaacccttatagtgca
ctatatttttcagctgtaaatctgcgtgaaaaaagaagcttgggaaattt
tctatttcaaagaaaaactgagaaaattatttttgtcagctgtaattgtc
agacaatagaaactttttcaaacaaacgagaagtaaaaacctttctttat
atcagttattttgaatttgttttaagaTTCGACTCATTCAGTGctatctc
acagaaacacacccttacagtgcattttgggatgctggaAAACCCGGCAC
ATGACGTaagccagatcatatgagtgcccccctccCCCTGGGGCTCATAT
ATCTGAGGTTATCTTTTTACTGCTGGCCAGAGTAACTGACATTGCTTCTC
AAAGAATCAATATATTACTTACTAAGCTCGAAAAGGTTTCGAAAAAGAAA
TGTCCTCCTCTTTACAGATTCGTGCGATATCGAACGTGTATCAACAAAGA
GTGGAGATTTATCAAGACAACGCTCCCAGGCTAGTGATCGGTGAAGAACA
TGTAGCCTCTACTCCTCTTCGATTATCGTAAGTTGCCTTTTTGATGTAAA
CTCTGATTTTAATTGTCGCCAAAAACCAAAGGCCCCACACTGATAAAGTT
TATAAAGCCTCTGACATTGCAATTTAATCTTTGACCTAGAAAGCGTTATG
CTTAATATCTGGAATATGCTCAGTCAGAGGCGTAGCCACGGGTTTTCGTT
TCGGGGGGTgagattggaaaatttttgacctttttaggGGAAATTTTTGG
AGAAGATTTTTCTCGTAACTTATGCGCCGCGGGCGTCAATTACTGCTCTA
AGAAATCTCAAGTTGCTTAAAAAAGAGGCATCTGAAGGTAAATGTTAGCG
AGAGTAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011704XLOC_011704Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020870-exon-sc0000373-1491911889:46248..46280TCONS_00020870-exon-sc0000373-1491911889:46248..46280Clytia hemisphaericaexon
TCONS_00020870-exon-sc0000373-1510915933:46248..46280TCONS_00020870-exon-sc0000373-1510915933:46248..46280Clytia hemisphaericaexon
TCONS_00020870-exon-sc0000373-1575043694:46248..46280TCONS_00020870-exon-sc0000373-1575043694:46248..46280Clytia hemisphaericaexon
TCONS_00020870-exon-sc0000373-1491911889:46557..46618TCONS_00020870-exon-sc0000373-1491911889:46557..46618Clytia hemisphaericaexon
TCONS_00020870-exon-sc0000373-1510915933:46557..46618TCONS_00020870-exon-sc0000373-1510915933:46557..46618Clytia hemisphaericaexon
TCONS_00020870-exon-sc0000373-1575043694:46557..46618TCONS_00020870-exon-sc0000373-1575043694:46557..46618Clytia hemisphaericaexon
TCONS_00020870-exon-sc0000373-1491911889:47215..47656TCONS_00020870-exon-sc0000373-1491911889:47215..47656Clytia hemisphaericaexon
TCONS_00020870-exon-sc0000373-1510915933:47215..47656TCONS_00020870-exon-sc0000373-1510915933:47215..47656Clytia hemisphaericaexon
TCONS_00020870-exon-sc0000373-1575043694:47215..47656TCONS_00020870-exon-sc0000373-1575043694:47215..47656Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:46248..47656 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.359649	1.02206	0.731796	0.296529	2.04739	2.17301	1.11249	1.17463	0.208167	0.58907	0	1.03864	0.682163	1.07779	0.661168	0.374853	0.294549	0.355391	1.63539	2.20877	0.905054	1.487	0.572401	0.255578	0.465779	0.725507	0.965746	0.822547	0.298449	0.146071
Blast
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BLAST of TCONS_00020870 vs. Swiss-Prot (Human)
Match: OTU6B (OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.404e-17
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 3 
Query:    3 NTKTGDMLSTEEYGKYCDDIENTTTWGGQLEIRAISNVYQQRVEIYQDNAPRLVIGEEHVASTPLRL 203
            N  TGDM + EE+ KYC+DI NT  WGGQLE+RA+S++ Q  +EI Q ++P +++GEE+ +  PL L
Sbjct:  200 NPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIVGEEY-SKKPLIL 265
The following BLAST results are available for this feature:
BLAST of TCONS_00020870 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTU6B1.404e-1750.75OTU domain-containing protein 6B OS=Homo sapiens G... [more]
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