TCONS_00020942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020942
Unique NameTCONS_00020942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020942 ID=TCONS_00020942|Name=TCONS_00020942|organism=Clytia hemisphaerica|type=transcript|length=3533bp
GCCgagagttttgaaaaaagaaagtttgttttgaaaaatcgagCATGCGC
GtccaaaaaaaagaacaacaaagatTTTAACTATTTCCCACATCTCAAAA
TGATAACTGCACAAAGAATCGTACCAATTTAACAGAACGCTTTAGAGAAC
GGTTTGCAGGAAATGTTTCTTTAGACGATTGAAACTAATTCAAAGGAAAT
CGAAGGAAGAAAACCAACATGGAGGACAGATTTTAGCGTTTTTTCATTGc
gagttttgttttcaaagatGTTTGGTTATCACTCTCCAAGTTATGATTGA
CTAGAGAGAATTCAACTATGGGCTCAGATaaaaagagGGTGCAAGTCAAG
ATCGAATTCGGTCATCAAGCCATCTCCAAGGAGAAACCTACAGATCCACT
GAAAACGCATGATTGGACTGTCTTTGTGAAGGGCGTCGATGGTGCCGACA
TCTCACATATCGTCGAAAAAGTCATCTTTCATCTACATTCAAGCTTCCCA
AAACCTAAGAGAATACGTAAGGAGCCACCATACAAATTATCTGAATCTGG
ATATGGGTCATTCAATCTCCCGATCGAGGTGTATTTCAAAACACACGCCA
AAGAAGATGCGAGGAAACATCTCATGCAATACGACTTGAGCTTGCAAATG
CTTGGTTTACCGCCATTGAATTGCACCAAGATTGAggctttgactttttt
gaacCCGTCAGAAGAGTTCGAGAAACGGTTGTTGAAAGCGGGTGCTGTAA
TTCTACCTGCGCTACCAGAAGATGTACCGAAAGTGAAAAGCGTTTCGCCT
GCGTCCTCAGCTGGTTCACCGAACCCTCAGAAGAAAACTAGTGCAAcgat
tccaaaaattaaaaaagaatctCAAAACTCCACGACTACATCCGTTAAAC
GGTCCAGCGAGGACGCGCTGTCGTCGAGTAAACCTAAAAAGAAGAAGAGT
AACGACCACGAGCGAGCGCCCACACCTGTGAATGCTGGATTGAAAGAAAT
CTCTATTCTATCACCTGCTACTGATGCTGCTGCCAAGAGTAACAGTGCGC
GGAAAGTGAAAGATGGTACTCGGCGACGGAGTGTCGACGCTAACGAGCCA
AGTCCAAAGCACCATTCATCCAAAGAAAGTAAACATAAAAGCAAAGACTC
CAAattgaaaaaagacaaaagtttaGACTTAAATTCGTCTAGTGGCGGCA
TTCcaaaactcaaattttcaataaaaagtaaaTCGGACGGGTCGTGGGCG
GCCACTTCCGTTACGAGTAAAGAAAACGGGAACGCTCCTGAGGATAGTAA
TATTTCAAACACCGTACTGGTGAATCCGAACTCAACAGTATCTCAACAAA
ATGAACTAGTCCGCAATGTTTTGGACGGTTTCCGGCAACAAAGTTCTGAA
GACGATATCAATGAAGAGGTTGAGAAGAGTATGAATTCTTCCCTTTCTTC
AAACGGTTCTTTAGAGACTACATCAAAATCCTCTTATAAGAAAGCGACTT
CTAAACACAGATCACCTTCGGTCACGGTCAAAACGAACGGTACTCATCAT
TCTTCGCATCATCCGAGTAAGGGAAAGGTCATCAAAGAACCTGTAGAAAC
GAAAACGACTTCGGAAACAGGTAAAAAGATGCCGGATCCTACCCTCACCC
AGCCAGAACTGAACGAAATGTTCAGCAAGATCTCCGAATCACAAGACTCT
AATATCTTGCAAGGCATTGTGGATATTGTCGAAGCGACGGGGGATTACAT
GATTACGTCATcaactttcgatttcgatttgtGTACACTGAACAATGATA
CTTTGGTTTCTATTAAACAATATTTAGAAGCTCATTGATAAATGGTTGAG
ATTGACCTTGCGCAATTGCAATGTGNCGATACTTTGGTTTCTATCAAACA
ATATTTAGAAGCTCATTGATAAATGGTTGAGATTGACCTTGCGCAATTGC
AATGTGACAAAGATAGATAGCTTGGTAAAACGGGCCATTTCAAGGTCGAA
ATGAAGTGAATCATGGATAATCAGGAATCCCATCACGTCTTCCGTCCCGT
TAACTGGACACAAAACACTTCCAAACATTTTTAGTACAACAGAAATTCGC
TTTTAATGCGTGGGTGTCCTGATTACTCATGATTTCATTCAACCGTTAAA
TTATTCTTCACGGTTCCACGGATAAGTTATTTCATTGATTGGGAaagttt
gaaaaccaaaaatgAAACCAATAGGAAGAAGTATCATCTGCTTTTGGAAT
AATACAAAACAAAACGTGCAAACATGGAGGCTTAGTTTTTtactatacac
cttttcgaccgtagccgacaattgccgcgcgggcaatTTTTTGTCCGTGC
AATAGAAATAATGACTGAGACGGTTTTAGGATGGTAAAACGGACATAAAA
ATGCCCGTGCGGCAATTGGCGACTACGGTCGTAAAAGTGTATCATGTCAA
AGGGAAGTCAGAAGTATTAGCGATAAAGCGTTATAAATGGTGTTTTGATT
GTGTTGTCTACaactcttttatttttatatattttttagaaagatggtca
tcattgttttttataagacacAAGAGTTGTTTATTTGCTGTAGATATCTA
GCAACGCTTGTTAatagaattttattttgatgctACTGTACACGCTTTAT
TTTATAAggataacttctataagaatatcagcgTGAGATTTCGGAGTTAG
GACAATAGACCTAATAAGAATACTGCTCACCCCCAGCcaaactattctta
taaaaaagcgtgtactgttTCAGAGGGGAAAATCACTTTACGAATTATTG
TACCCTATTTTGAGTAATTTCAATGCTGGACAAAAAATTGAATGATGAGT
TTCACCAACCAACATACTTATTTGCATCTTATCTGCATCACTTATTTAAC
TGATAGACTTGTACACTCATGACTGTCGATTACAAATGTTTGGGAGTGGT
TAAATAAAAGATATTTCACGACTAGCCACCCACTGAAGTCTAAACGCTTA
TCGAGACGAATGTTTATAGAATTTCTTAGATTTTTCGGGTAAATTATAAT
TCATAAGAATATAATAAATGGATAATGCAtggatgctttgaaagcttaac
GAGTTTTTCGTATTATGAAAAATGTTTCTATTAAATTTCCATGCAGTCAT
GGCCAGACAATTCATTTTTACGAGTCCATTTAGGTTTTgtaattaaaatt
tattttttagctATTGTACGGTTTAGATTTCTTAAAAATTCTTAAgtata
aatacaaaaaatattgacaaaatcatTGTAAAATTATGTGAAAAAGTTGC
AACATTTAGAAGCGGTAAGCCTAAACAGCAATGCCTACCTAATCCACTAC
AAACATGGACagaatatttgagacaaaaacgattttttagcgcgttaaac
tacaaaatcgaaatattcaatgaagaaggtagaagtgctaaaatagcaat
tctcgcccgaactttaaattctgaaaaacgttaaaatacactaaaatctc
gaTACATTTTGAACATGATCTAGAAAAGAATTT
Run BLAST on NCBI

transcript from alignment at sc0000374:166311..185490+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020942 ID=TCONS_00020942|Name=TCONS_00020942|organism=Clytia hemisphaerica|type=transcript|length=19180bp|location=Sequence derived from alignment at sc0000374:166311..185490+ (Clytia hemisphaerica)
GCCgagagttttgaaaaaagaaagtttgttttgaaaaatcgagCATGCGC
GtccaaaaaaaagaacaacaaagatTTTAACTATTTCCCACATCTCAAAA
TGATAACTGCACAAAGAATCGTACCAATTTAACAGAACGCTTTAGAGAAC
GGTTTGCAGGAAATGTTTCTTTAGACGATTGAAACTAATTCAAAGGAAAT
CGAAGGAAGAAAACCAACATGGAGGACAGATTTTAGCGTTTTTTCATTGc
gagttttgttttcaaagatGTTTGGTTATCACTCTCCAAGTTATGATTGA
CTAGAGAGAATTCAACTATGGGCTCAGATGTAAGATTTTGTTACCTCAcc
cttttttctaagaaaagatATCTGGCTCTGAGTCTCACAcagttcttctt
tttcatgaatttcatttttcagaattcagAAAGCTCTTGGtttacagtca
ggcacatcctggcaaatgaacggagtgagcatttgcatggggtattcgtc
acccagtgtaaatgagataggacgtctcaggctaaaagcgtgaaaatgaa
taaaaatgaacttcaaactgaacaagggaaaaaggaagaaaactgggaac
tttattttttcgttaaaagtttcttcaatcttcgaagacaaaattgaccc
atggaaaaaaaatttcatctatgcagttctttgaaataaagcaaaatttt
tccaacccggttcaattaaactggatattcggcgctattacgtcactttc
gttttcgaccccgttcatttgccaatgccAATGGTCgtaagtgaaaaata
ccccgttcatttgccaggatgtgcctgactggtTTAGATAAGGCTCTTCC
AGTTAAAGATTTCCGAGGTAAAACGTTTTTTCAATATTCctggatttcca
atacaaaatcaattttttggcaaaaaaattttgaatagaCAAATTCTTAG
AGAATTTCCTTGCTTGTATTGTataccagacgaccacggctttttcctcg
acaccgttCCGTCTATAACTTTTACATTTATTCCCCAGAGATTCGTGGGG
GAATAAAAATCCTCGGCTGCAAGCCAAAGGACCGTAGCTTTTGACTGTAG
CAAAAACTCTACCAATAAAGTTTGTCACCGCGAAGGAgtgtttttgtaaa
caaagctcAAAAACAGAGGCGGGGAGAGTGGGAACTGATGTTTTGctaca
tttcaatcaaaaacaGCCTAGACaatgttaaattttctttcagaaaaaag
actataatttgtttacctttatccttgcagcttcccaacatccaagctct
caaacatcacatgaaattactttcgattttccataaaaattatgcgatga
aaaatccggggATCAATAAATTAAGACTTTCTTTTCCGCACAAGTTATCT
TTCCTTATAacaaattattacttttcaatataattgttaaatataatttt
tgatttgtattttaagtttgaaaaagtcgattctacttagttctttgttt
tcatgtctagCCCTcgtctcaaaagaagtcccagaatcccgagattttgg
cagtcgggcgttcaaaacaaaggcgtttttattttccgcccacttacaaa
attttctttaaaataggcATTTAagatatcaaatttaaaaataattgtat
aaaaccttattttctaccgtatagtccttcttctaaaacgaaaaaacaaa
atacactagaaaaataaagaaattacgagtgttatcaagtcacccaaaat
gaactttcattcgtcGCGCGTCATTGGATTGTTATACGCCACgatctatt
gtcaaccattgtccaatcccgtaagcgattgaaatgccgtcagtaataat
ctgagaaagagaacaataacattatgacatcacacaaataaattacgctg
ggGAAGTCCGCGAGGACAACACGCGGTCTTAACTTTTTTCCCTCGTAACT
ttggggggaaaacgaaagtactctatattttacgtatggggaagtgtaag
aaagatttacaaaatagaaaagtttcgttttggggtaaagaatcagtatt
gtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtg
gggtaaagaatcagtattgtgaatttaagcgagtttctattttgcaattt
ttctacagagccaaataaagattttttctattgttcttgctcgattgcct
ctaacaataagttccgtagttatgaggttatcgagacaaaatgtgacgaa
tttgcacggaaacgaaatttaacattagtctaggctgaaAAACATTCGGA
AAAATGTAACTttagaaaaattccaaaatgtgcCAAGAGAGttggaaata
gaccttttcgcctttcgccatcttgaattgcatgcaaaaatagaggaacg
agAAAGCcctggttggatttagttggaaaatatgcgaaacatatgcaagt
ttacacaaagattaaaaagacaacaaagcatcttacagtataaagaaata
ttataatcattagaacaataaaagatggaatttctttaatccaaaaagaa
acattaattacagaacaacaaaagccttttagaaatttgttcttaaagac
attgcatattctgttttcctgccattaaaaaattccaccaagacggagta
cacacatcaaactttcaaaacacgcaaactgaaagcagtgattatgacgt
cacacattcagagggttcagatcaatgttttgatttcatcgtctggcggt
tctattcccaggagagtAATTTACCTCCAGCCAAATAAGGatatttttgt
accttcgcccgggtgatttttcagcttgagtttatgtctaatgttatggt
tttttgaagtgcttgttctaagagatgagcaaatttgattatttctagtt
ttcaaaagaagtaaatttaatctttcttctacaagattacacttttaAAT
ATAATgtcaattatgcatgtaagttttatattaatactttctttttgcat
atgttttgcatactttctaagggaatttcaccacggcaatttggcaccat
aatttttgcatacaattcaatatggcagaTGAAAAGGCGAAAAGGTTGCA
GAATgttgtgttttattttttatttatactttGAACTTTAAACTGAAAAG
TCACTCTTCAAGAAGTTCTTGGAATGGCTAGTTGTCTGAGAATTCTCCAG
AATTTATAGAGACGAATTTATAAAGGGAAAATGCAGAAAGATGAATACAA
GAACCTTTCTCTGGAGCACTGCTTATATTGGATTGTTTTTGTTACATAAA
GActttaccgtaagttggtctaatatcgacatccctcgtctaattccgag
aCCCttcgtctaattctgacacccttctttagagaaaggagtaatatgaa
agcttgaatcactgattgaaaaaggaatAATCCTCtttgaccactaagca
aagaaaaacagttaaaaaataattacatatttctcatttatgatttttag
cgtttcatcatttttttagccaaaaatgggtcatttttaggcagaaatcc
aaaaaaaccgaAATATTAACTTGGAAATAACCCTATCATGTTATATATCG
TGGAAGCGgaattttgagtagattttgaatatccaagtttcatgtcctga
aaaagaactcaactcaaattattatgctttaacagctaaaaatagacatg
ggtacgagctttttgcttatggctttttaacctttctattaatttcagct
gataaaaagggtgtcggaattagaggagtggtgtcgacattagaccaagt
tacagtaATTTTGGTAAAATGGGCAACGAATGATGAATGGGTcatgaatt
tgttgaaaaatggaCAGTGGTGAGACACACAAATTAATCAAACATATCTG
TATGCTGGAATGATAGTGGTTGGATTTTTGCTATAGATTGATCCGTGGAT
CATCCCTGCTTCCAAACAAACTTGGAAGTACAAGAGGTGTTTTTGTTACC
AAATAAAGcactattttttcattttcgaaaGATTTGAGTAACATTGTTCT
TAATCACTTGTCAGATCGTTTCTATCGTggacatttctatttttattcag
ACAGTGGACATGCAGAATGAGAAATGTTATGTGGTGGTGGTTGGTGGTTG
GTGGTGTAATAACCAGGCAAGCACAATTCGAGAGGTCcaccaaatatttt
tgaaaccaTGAGGAAATGTGGCTGATGGTCTAAGCCCCCTGGGTTATTTT
ATTTCGAATTTTTGACAGAATAATCCACGAGATAGGAGACATTTAAAAGA
TACCTTTTCCTTTTGTGGATTCTACCGGAGACCACTACGAGTATAGAAat
gattatttgaaattttgatttcaaaattttgccgccgtcctaagtagctt
gtttaggtcggcaaagacaAAATAGGAAGAAAATTAACGAATTAACAAAT
TCAGCTGCTCTATAATTGTGTTattaagttttatgttttataaagagaat
ggaatgaggcttgattatcatgtgttatcaaatgataacacaattagatt
aacctaacaaataatatttttcctctttaggtcggctttgccgacctaaa
acaTGTTCTTTTGTCTGCACGCCGAACTAGAGTGTAAATTACGTCGGCAA
ATAAAAGCCGACTTCAGCTCAAGTTACGTCGGCTTTCAAGTCGGCattgc
cgaatgccgacctggaTTCACAGGGCTGGATATATATTTACATGCAAAAT
CAaaggaaatcttttttatatattttatacttttttcaaaggagattttg
cattttttttagaaaGTGGTAAGAGGAATCTTTTGTCGTTTTAGGTGcat
aaaatttttacaattcTTGTATTCCTCTGTCTTTATGTATGGTGGTAAGC
tttatcttactatactaattgagtttatgaaaaaactttgtaacgctagc
ccagcatTAAGATACACCTCCGTCTGTCACGGGCTTCACAGCCGTAAGAG
TATACGGATAGGTAATCTATTAGCATTTTTtaagaagaagtcgttgcagt
gtgaatctttcgcaaatttaaaaacccactttcccgtggaaataattgac
ttttttgtttttttcggacccttggggcacaaggtacctgttgaccgtaa
aaattccaaaattcgcgaattgaccgttgacaaaattaggggtaaaggga
ccaaatgacgtcacagattttgggaaaacttcaaaatgtgatatctcgag
tttgagaaggagttgggaggtcgttgacccctcattggatcgagaattct
ATGGGGAATAAGTTGGTAGGGTTAATGAGGCTTGAgtgtgactttgaaat
ttggctgaatttttaggcgttttcacttgatgatgtcatcaaaacaggaa
aaatgcaatatctcgagattggaaaggagttaggagatggttgacccctc
attggaggGGAAATTCTATGAGGAATAAGATGAGAGGGTAATAGGGGGTa
tagagaaattttcaaaaataaatatattcaaattgaggcattttgggtcc
gatgatgtcatcaaaacctgaaaaattcaatatctcgaatttgagaaaga
attaagcaatggttgacccctcatcaTTGGATTGGAAATCATCGAGAAAA
TCTTTTGGgtaaatgaaaaattgatttcagtgaagtaaACAATTTATTGA
CctttcaatgacgtcatttagggcccaaatgacgtcacaaaacattaaaT
ATGCGATTTCTCGAACTTCAATCAGTTACAAGTGATNcaaatgacgtcac
aaaacattaaaTATGCAATTTCTCGAACTTCAATCTGTTGTAAGTGATAA
TATTTTGTTCTTTGGGCTTAAAATTCAAGCTTATTACCccccccaccatc
caaagggcttttgatgtgttcaacaacactctactcagcGGGTGCGTCGC
CGGGTGACAgcgtttatgaaaaatgtgtgtaacgcaagatggtagctgag
ctgtggttgatgaaaactaattcaaattccccttaaaaataaagttagag
agcatcagcaataccatctttatcatcctaagggcttttgatgcgcaagc
TAAACTGGcatttgcgacgacgggaaccgtctagtattttctatttcaaa
atatttgagcaatttattttcaatgcttATTTTATTGATAGATAAGTGCG
TGGTTGTTACTTTTTCTGCTCTTTACTTTTTAGGCAGtgaaaatttataa
aagatGCATTTTTCATTGTGTTTAATTTTTGTAACCTTTTGTAAAATCAA
CACAGTGAAACTcctcaaaatattaaaaaaagattcTGCAATAAGTCTCT
TTGTTAAAATGTTTTCGGCCGCGATCTTTTTTCGTCGCTAGTGACGtcga
attttataaaaaaacacggcGTCGACAAATTCGTTCAAGTTCTCCATAGT
AGAAAGTGGTAACAAGTGATAGACCAACAGAGTGATCAAAAAATTGCGTG
TTGGAATAGAGATAGGCTAGGAATTTCCATGATGGGTTTTAATAAAATAT
TCCGTAGCACTTTTAAAAATTGACTGGATTTCAGAATGCTATCCACCCCA
CCCCTGTTATCCACCCCTATCgatatttttctggaaaagcccattgaatG
TGTTCATTTTATTTGCTTATGCCTTTTAAAGagacatacatgtttttttt
tataaacatatgTTTTTTGGGAAACAAGCTCAGTTATGCTTAGAGATATT
TTAGACTCAGGCTCGAAGTATGTTtaggggccattcaaaaagtacgttcg
tcgccgaggggggggggagggggtcagcaAAAAAAGCGAACGAAAACGAA
CGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNAAATAGGGAAATTtggacgaacgtactttttgaatggcc
ccttatcatatgcttatttttccgaaaaatttgagtctccaatttttcca
aaatctgtcgTTGCTACATGAGGATAGGGAAATAAGTAATGACATAAAGA
TTTTTCAGGAAAGTTGTGAACGATTGCCGCGTTTACgcttgtattttttt
taaacgacAATTGCATTACAACGACTTCTTTTCCACCTataagaaacaaa
atttttcacttacacacctcaaaagcaagctcactaatatgcttgtaata
tgcttattttttagacaaattcaggtcttggtatgcttataaacgttatg
cttataaaaaaaaacatgtaccagttcacatgtcaaaataaaaaatcaaa
ccaaatattacaagtttgttttggacacgtgattttaattgttctcttta
atgacacgtggttcgcttaaaatgtttatattttcttaaaatcatccttt
ttgaaatttgagacTGGGTTTGTTCTTGATTTGTTGTAAGGTTTTGCCCA
AAATTGACTTATGACAAAATTATCATGATATGATGCACCAGCCTTGCAAG
TAGACCGCTCGGGCAAGATATAGCAAAGCGTTTTGTTAGGGATAAGCAGC
AGGCAAAGCCAGCCTTCTGCTCATCATCCCTAACATGCAGCCAagcatcc
atcaaactagaagttcagtcaGTATAGCCCtagcttttcataaaaaattt
acaGGCAACACATTTGCAAAAAACAACGCCGCCATATAGAAGATtcttca
aattcagtatgtgaataatAGAGCAGTGAAAATACAAAGTGTATTTCTCC
TTTTTTTGTAAGAgttccagaaatgaaaataaagggataatggatactat
ccactgatgatcagTGGCACTATCATAAAGCTAGAAAATAAGGGTTAGCA
TACTCTTTTCTTGAGAAAATAATGGAGggattttaaaatctttccaCCCG
GATGTGAGAGAGTTTGCAGATGTTCTGCAGTGTGGCTTTTTTCAACTCGC
CCAAATCCTCATGCAGcacattatatttttaaagtttttaaaatggcTTT
GCTTGATTATCATTTCGTGACAGTGGCGTTATTGATTTTGTTACATctgt
taaattcaaaaggaaaccaggtgctttttatcattttcagttcGAAGTAA
AAAGgcctactaaaaaattccttgtgttcaaaaagttgttttgaattttt
tatctttgtagAAAGCTAGTTTTGAAGATTTGAGTGATGAATACAtcttt
aaagttttcttttcaaaaatgacaCTACACATTTCTCATAATTCATAATC
ATATATCAACAATCTGTGACATGATATAGGTAGAGTAaaatttcccgggg
gggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNaccctgaccagcggagcatccctgtaacccatct
tgccctagtacccccccccggtaAAATTTATTGATAGCACTTAAACTAGA
GGCAATGTCATGGATAatttaaaaactccagcacTAAAACAATGACGCAT
TAACGGATAATTACAGCAAGAATAATATGACCATTGGTAGTTTATTTGTG
TTTGATTGTTATATTGACCCTGACTGAAAATACAATAAGTATTACAGATT
AGTAAGGAATATATCATGACCACCATTATCAAAAGGTATATTGAACTCGA
TGAtacatttgaaaataaatatttataaaagtaaAGTTTACAAACATAAA
AAACACGAATAAGGGAATGAATGTATTGTAAAGGTTAAGAAGTTATTATC
AGAGGCATTGACTGAAATTGCATCATCGCTATGCACTTTATCTAATACCT
CTTTGGTTGCTTCATCTTCCTTGGCTGATATCGGTTTTTCCTTAAGGACG
ACCCTCCGTTCGTCAACTTGGGTTGACATCTTCTTCTGGCTTGGTTGACA
TCTTCTTCTGGCTTTGTCGAGTCAAGTGGCGGTAGTATTTCTGTTGTTTC
TTTGTTCTTCTGTGTAATTTAGTCTTCCCCATATCTAAGAGCAAAAGAGT
ATTGTAGTTAACACATCTCAATGTAACGTTTTCGCGCCTTTCGCACCCTT
GTTGATGCCCTTTGTGGAATAGGATCTATCCTTGTATCTGGTAGGATAGG
GATGTCATTTGGTAAAGGATCATATTGGATAATTTCTCCGTCAATGAAGC
ATTTTGCTGCTTCTTCTAGATCTCCAGTGTTTGGTATTTCTTTGTTCAGG
GGGGTACAGACACAGGGTACTGACCCATAgccaggtggtggtgtctattt
ttgcatttcaaaaaagttagtacccggtactactttgggggtgggggtgt
gtatttttcactcttcaagcaagtacaggatactatttgggtactttttc
acagaattttgctgtttttcaataaaaaaagtagtttgttgtaatatttt
gacttttttcaaatattaagttttttgatttgaaatttttttaatcgaca
attttttttttactcttttcagaaattttttgatttttttgaaaacaaaa
cttccaaaaatggtcaagaagtgagtgatgaaaatcaaaggacaaaagct
tctgactccatcattgatagtttgcttgaattatctgtcaattttcagtc
tgaaaaactaacaatagtattattattattattattatttacgAATATTT
AAACAGGATAATTCTACAGTCGTAACATATATACATATTTACACTGTTAT
CTCAGAAGTCCTGCATAAAACAGAAACtatataaaaatctaaaaaaatat
ataaaaatttataaatataatatactaaaatctaaaaatctatgggggta
aaaagttcaaaaatcagaaaaaggaaaaaccagGTCCTAAATCTAGTCCT
AGAGATTTGATAAAATTGCAGAGAGTGGATAAGATTAGGTGTATAGAGTA
CACAATACTCAAGTGTGTTAATTTAAAACTGAGTGGCTAATCTTGGTCTA
ATCTGTataatttaagattttaggggtggtgtccctattttttacagcaa
aaatgaagtaggTACTAAATAAGGGTGGGTGgtactaaacaaaattttag
taaaaaatcaatttagtaccctatgggttagtaccctgcctctgtACCCC
CTGCTTTGTTAGGGGCTTTATCCTGTACGGGTTCATTAAAAAAACGGTGA
TGTTGCTTGACGTCGTCAAGGTGCCTTAGTAGAGTTCTTGTCgaatttag
atattttaataGTACGTTCTTCATTTCTTCGTTTCGTTCCTGAACTAGAA
ATGGTGAAGGAAGAAATATGGGATCGAGCTTGGACCTCCTTGTCCAGTCC
CTAACAAGGACTAAATCCCCAGGAAGAATGGTAGACTTTTTCCTGTATTT
TTAGACGTTAGTTGCTCCCTGTCGTTTGCTTTTCTTCTCCTTGTCTGCCT
CTCGTGCATTGTGCACCTCCTCGTTGTTGGATGCCTTCCGGGGGAATTTG
TGTTTCAAACCATCCCTGAAGAGCATGTTTGCTGGTGGTATACCTGTTAC
TGGGTGTGGTGTTTGTCTATATGTTTTTAATCCCTCTCTCAAGGCTTCTG
CCTCGTTGTATATAAGTTGTATAAGTTGTATATAACACTGATTTTGTTTT
TACTATTcatcttttacagaaaaagagGGTGCAAGTCAAGATCGAATTCG
GTCATCAAGCCATCTCCAAGGAGAAACCTACAGATCCACTGAAAACGCAT
GATTGGACTGTCTTTGTGAAGGGCGTCGATGGTGCCGACATCTCACATAT
CGTCGAAAAAGTCATCTTTCATCTACATTCAAGCTTCCCAAAACCTAAGA
GAAGTAAGCTTTAATCctctttttctttgatgttcCGCCCAACTTTGTTT
CCTGGGTAACATCTGTGTTTTAAAGCTTACTGATNTAAACctctttttct
ttgatgttcTGCCCAACTTTGTTTCCTGGGTATCATCTGTGTTTTAAAGC
TTACTGATAGCGACAGATAGTATTCTCTGGTCCTGGTGTCCATCAGTATC
CTTAATTAAGTCTAGTATACGCGGGAACGAGAAAAAcgtaaaattctttc
ttttttttaaataacccgTCGTAGTATGTATTGCTGTCCACTATGTATAC
TTTaaatagaaaaacaatttttcgaaattcacgaaATTTTCTTTGAGTGC
TTTCTTATCGTTTATTTCGAAATAATTTGGTTCGATTAACAAAACATttc
cattgaaaattttttcacaacACCCCTGCGATTGTGCTCAAAACTTTCTT
CCTTTACATGactgtttgaaaattttttcacaacACCCCTGCGATTGTGC
TCAAAACTTTCTTCCTTTACATGACTGTTTCGAGATCAAAGATCGTGCTC
CCTCAGTCATGTCGAGTTTTCACTGATTCGCGTTCCTTTTCTTTCTCAGT
ACGTAAGGAGCCACCATACAAATTATCTGAATCTGGATATGGGTCATTCA
ATCTCCCGATCGAGGTGTATTTCAAAACACACGCCAAAGAAGATGCGAGG
AAACATCTCATGCAATACGACTTGAGCTTGCAAATGCTTGGTTTACCGCC
ATTGAATTGCACCAAGATTGAggctttgacttttttgaacCCGTCAGAAG
AGTTCGAGAAACGGTTGTTGAAAGCGGGTGCTGTAATTCTACCTGCGCTA
CCAGAGTAAGGATTTTTGATTGttcattttatttcaatttgatTTTCCTT
CACATTCAGAAATTTAGTAAACAAGGAAATACGGTCGTGTAAGCTCAAAG
CCTGTCTCATTTAATGCAATTTTAGCGAAATTTGACCTCAACCGTACTGA
AACTGACAGGAATTTCAACTTTAAATGCCTGAATTTCCTTGTATTTTTTA
GTAAGGGACATGATGTAGTTCATGCTCGAAATACAATATATGATGTTATC
CATGGTTCCGATTCTTTTTATCAATACATACTTCAGGATAATAATATTTG
GAATGAAATAGGAAAAGATTAGCAAAAAATTCGCTTTTATATCCCAAGAG
GAGCCATTTTTGTTGAGTAGCCCCTCCTTTATCTACTTTAAGCTTAATCT
TTCTTAATGATTAAAAAATCAGGTGTTTTGAGCAGCTGCGCTCGAGTCAT
TAAGTGAAACTAattaaacttcttttttttctaattaaACTACAACTTGT
AGACAAACAGAACCAGGTTCTTGAACAACAAACAGATCAAAATCTAAAAC
GTTTTCCTCAGTATCCATCATGCGCAActttattcttcaaaaaaacttat
attgagtattttttgaaattcatagTGAGAGTAGTGTAGTGGTTTTCTGA
AAAAACTCATTTCTGAAGAAGACCTCACGTGGATGAGTGGTTTTGaatct
ttttatgttttatttgaATGGGAAGTGATTTAAATGCTTTCCGATGTGTT
TTTCTTATAGATGCTGAGGTATTGGTTTTCGCAATTCAGATGGTCTTTCT
TGTTCAATGAGAAATAACTTTATTCTCAGGACGTTTTggtcattaatttt
tgaaaaaatcatagCTTAGATATTGCTTTGTAGTTGGTGGgtgcttgatt
gattgattgattaattgattgattgattttcttaatcACGTCTTCTTTTA
TTTCTCAGAGATGTACCGAAAGTGAAAAGCGTTTCGCCTGCGTCCTCAGC
TGGTTCACCGAACCCTCAGAAGAAAACTAGTGCAAcgattccaaaaatta
aaaaagaatctCAAAACTCCACGACTACATCCGTTAAACGGTCCAGCGAG
GACGCGCTGTCGTCGAGTAAACCTAAAAAGAAGAAGAGTAACGACCACGA
GCGAGCGCCCACACCTGTGAATGCTGGATTGAAAGAAATCTCTATTCTAT
CACCTGCTACTGATGCTGCTGCCAAGAGTAACAGTGCGCGGAAAGTGAAA
GATGGTACTCGGCGACGGAGTGTCGACGCTAACGAGCCAAGTCCAAAGCA
CCATTCATCCAAAGAAAGTAAACATAAAAGCAAAGACTCCAAattgaaaa
aagacaaaagtttaGACTTAAATTCGTCTAGTGGCGGCATTCcaaaactc
aaattttcaataaaaagtaaaTCGGACGGGTCGTGGGCGGCCACTTCCGT
TACGAGTAAAGAAAACGGGAACGCTCCTGAGGATAGTAATATTTCAAACA
CCGTACTGGTGAATCCGAACTCAACAGTATCTCAACAAAATGAACTAGTC
CGCAATGTTTTGGACGGTTTCCGGCAACAAAGTTCTGAAGACGATATCAA
TGAAGAGGTTGAGAAGAGTATGAATTCTTCCCTTTCTTCAAACGGTTCTT
TAGAGACTACATCAAAATCCTCTTATAAGAAAGCGACTTCTAAACACAGA
TCACCTTCGGTCACGGTCAAAACGAACGGTACTCATCATTCTTCGCATCA
TCCGAGTAAGGGAAAGGTCATCAAAGAACCTGTAGAAACGAAGTAAGAGC
TCTTTGTTgtttctttcttcaattttttgatttgtttttgtttaacgTTC
CTCAATTTGCTATATATGATGCTGCAATGGAGTCTCCGTAACTCGGACAC
GCACGGGAAAcaaaaatttgtatatgttaaggaaatttcgagatgTGGAG
TAAGGttcataaggcattgttaacttcAGGGACGAAAaattttgttcgag
ttaaagagacattggagttatagaggttcgagttaaagagactccacttc
AATAGATTAGCCGACTGATTGAGAAATTAGAATTTAGGGGTCTACTCGAc
tattattcatgatattttgGAATAGGACTCCTCCATAATATACACTTTAA
AGCAAACAGacttcgttcttttttttcaacgAGGCTCTCTCAATTACTTT
ACCAAGAAAAAGAGGACCGAAAGTACAATACTTAGTTCTCTCCCAAGATC
TTCTGGACTCTCCTTACTTAAACGCTATTTCGTCTTTTTGCACTTTTTAG
AACGACTTCGGAAACAGGTAAAAAGATGCCGGATCCTACCCTCACCCAGC
CAGAACTGAACGAAATGTTCAGCAAGATCTCCGAATCACAAGACTCTAAT
ATCTTGCAAGGCATTGTGGATATTGTCGAAGCGACGGGGGATTACATGAT
TACGTCATcaactttcgatttcgatttgtGTACACTGAACAATGATACTT
TGGTTTCTATTAAACAATATTTAGAAGCTCATTGATAAATGGTTGAGATT
GACCTTGCGCAATTGCAATGTGNCGATACTTTGGTTTCTATCAAACAATA
TTTAGAAGCTCATTGATAAATGGTTGAGATTGACCTTGCGCAATTGCAAT
GTGACAAAGATAGATAGCTTGGTAAAACGGGCCATTTCAAGGTCGAAATG
AAGTGAATCATGGATAATCAGGAATCCCATCACGTCTTCCGTCCCGTTAA
CTGGACACAAAACACTTCCAAACATTTTTAGTACAACAGAAATTCGCTTT
TAATGCGTGGGTGTCCTGATTACTCATGATTTCATTCAACCGTTAAATTA
TTCTTCACGGTTCCACGGATAAGTTATTTCATTGATTGGGAaagtttgaa
aaccaaaaatgAAACCAATAGGAAGAAGTATCATCTGCTTTTGGAATAAT
ACAAAACAAAACGTGCAAACATGGAGGCTTAGTTTTTtactatacacctt
ttcgaccgtagccgacaattgccgcgcgggcaatTTTTTGTCCGTGCAAT
AGAAATAATGACTGAGACGGTTTTAGGATGGTAAAACGGACATAAAAATG
CCCGTGCGGCAATTGGCGACTACGGTCGTAAAAGTGTATCATGTCAAAGG
GAAGTCAGAAGTATTAGCGATAAAGCGTTATAAATGGTGTTTTGATTGTG
TTGTCTACaactcttttatttttatatattttttagaaagatggtcatca
ttgttttttataagacacAAGAGTTGTTTATTTGCTGTAGATATCTAGCA
ACGCTTGTTAatagaattttattttgatgctACTGTACACGCTTTATTTT
ATAAggataacttctataagaatatcagcgTGAGATTTCGGAGTTAGGAC
AATAGACCTAATAAGAATACTGCTCACCCCCAGCcaaactattcttataa
aaaagcgtgtactgttTCAGAGGGGAAAATCACTTTACGAATTATTGTAC
CCTATTTTGAGTAATTTCAATGCTGGACAAAAAATTGAATGATGAGTTTC
ACCAACCAACATACTTATTTGCATCTTATCTGCATCACTTATTTAACTGA
TAGACTTGTACACTCATGACTGTCGATTACAAATGTTTGGGAGTGGTTAA
ATAAAAGATATTTCACGACTAGCCACCCACTGAAGTCTAAACGCTTATCG
AGACGAATGTTTATAGAATTTCTTAGATTTTTCGGGTAAATTATAATTCA
TAAGAATATAATAAATGGATAATGCAtggatgctttgaaagcttaacGAG
TTTTTCGTATTATGAAAAATGTTTCTATTAAATTTCCATGCAGTCATGGC
CAGACAATTCATTTTTACGAGTCCATTTAGGTTTTgtaattaaaatttat
tttttagctATTGTACGGTTTAGATTTCTTAAAAATTCTTAAgtataaat
acaaaaaatattgacaaaatcatTGTAAAATTATGTGAAAAAGTTGCAAC
ATTTAGAAGCGGTAAGCCTAAACAGCAATGCCTACCTAATCCACTACAAA
CATGGACagaatatttgagacaaaaacgattttttagcgcgttaaactac
aaaatcgaaatattcaatgaagaaggtagaagtgctaaaatagcaattct
cgcccgaactttaaattctgaaaaacgttaaaatacactaaaatctcgaT
ACATTTTGAACATGATCTAGAAAAGAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011743XLOC_011743Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020942-exon-sc0000374-1491911889:166311..166639TCONS_00020942-exon-sc0000374-1491911889:166311..166639Clytia hemisphaericaexon
TCONS_00020942-exon-sc0000374-1510915933:166311..166639TCONS_00020942-exon-sc0000374-1510915933:166311..166639Clytia hemisphaericaexon
TCONS_00020942-exon-sc0000374-1575043694:166311..166639TCONS_00020942-exon-sc0000374-1575043694:166311..166639Clytia hemisphaericaexon
TCONS_00020942-exon-sc0000374-1491911889:180230..180413TCONS_00020942-exon-sc0000374-1491911889:180230..180413Clytia hemisphaericaexon
TCONS_00020942-exon-sc0000374-1510915933:180230..180413TCONS_00020942-exon-sc0000374-1510915933:180230..180413Clytia hemisphaericaexon
TCONS_00020942-exon-sc0000374-1575043694:180230..180413TCONS_00020942-exon-sc0000374-1575043694:180230..180413Clytia hemisphaericaexon
TCONS_00020942-exon-sc0000374-1491911889:181010..181265TCONS_00020942-exon-sc0000374-1491911889:181010..181265Clytia hemisphaericaexon
TCONS_00020942-exon-sc0000374-1510915933:181010..181265TCONS_00020942-exon-sc0000374-1510915933:181010..181265Clytia hemisphaericaexon
TCONS_00020942-exon-sc0000374-1575043694:181010..181265TCONS_00020942-exon-sc0000374-1575043694:181010..181265Clytia hemisphaericaexon
TCONS_00020942-exon-sc0000374-1491911889:182219..183052TCONS_00020942-exon-sc0000374-1491911889:182219..183052Clytia hemisphaericaexon
TCONS_00020942-exon-sc0000374-1510915933:182219..183052TCONS_00020942-exon-sc0000374-1510915933:182219..183052Clytia hemisphaericaexon
TCONS_00020942-exon-sc0000374-1575043694:182219..183052TCONS_00020942-exon-sc0000374-1575043694:182219..183052Clytia hemisphaericaexon
TCONS_00020942-exon-sc0000374-1491911889:183561..185490TCONS_00020942-exon-sc0000374-1491911889:183561..185490Clytia hemisphaericaexon
TCONS_00020942-exon-sc0000374-1510915933:183561..185490TCONS_00020942-exon-sc0000374-1510915933:183561..185490Clytia hemisphaericaexon
TCONS_00020942-exon-sc0000374-1575043694:183561..185490TCONS_00020942-exon-sc0000374-1575043694:183561..185490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000374supercontigsc0000374:166311..185490 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.64196	3.24532	2.2751	2.01716	68.082	48.7138	41.6564	40.0177	16.5604	20.4823	8.46133	11.1494	8.34757	7.42764	7.55661	10.3136	11.9314	9.27756	5.40673	7.40398	11.5066	14.5826	12.2899	12.2108	15.506	23.2841	20.4694	14.6104	16.0298	12.9234
Blast
[Close]
BLAST of TCONS_00020942 vs. Swiss-Prot (Human)
Match: AF9 (Protein AF-9 OS=Homo sapiens GN=MLLT3 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 7.070e-43
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 3 
Query:  339 VQVKIEFGHQAISKEKPTDPLKTHDWTVFVKGVDGADISHIVEKVIFHLHSSFPKPKRIRKEPPYKLSESGYGSFNLPIEVYFKTHAKEDARKHLMQYDLSLQMLGLPPLNCTKIEALTFLNPSEEFEKRLLKAGA 746
            VQVK+E GH+A  ++KPT    THDW VFV+G + ++I H VEKV+FHLH SFP+PKR+ K+PPYK+ ESGY  F LPIEVYFK   KE+ RK    YDL L + G PP+N  + E LTF NP+E+F ++LLKAG 
Sbjct:    7 VQVKLELGHRAQVRKKPTVEGFTHDWMVFVRGPEHSNIQHFVEKVVFHLHESFPRPKRVCKDPPYKVEESGYAGFILPIEVYFKN--KEEPRKVRFDYDLFLHLEGHPPVNHLRCEKLTFNNPTEDFRRKLLKAGG 140
The following BLAST results are available for this feature:
BLAST of TCONS_00020942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AF97.070e-4357.35Protein AF-9 OS=Homo sapiens GN=MLLT3 PE=1 SV=2[more]
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