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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021193 ID=TCONS_00021193|Name=TCONS_00021193|organism=Clytia hemisphaerica|type=transcript|length=7812bpRun BLAST on NCBI transcript from alignment at sc0000379:210557..234091- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021193 ID=TCONS_00021193|Name=TCONS_00021193|organism=Clytia hemisphaerica|type=transcript|length=23535bp|location=Sequence derived from alignment at sc0000379:210557..234091- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00021193 vs. Swiss-Prot (Human)
Match: VIAAT (Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=2 SV=2) HSP 1 Score: 170.244 bits (430), Expect = 1.799e-43 Identity = 116/371 (31.27%), Postives = 193/371 (52.02%), Query Frame = -1
Query: 1807 DDRKAHAFLAGWNVSNLIQGTGILGVPYAVQQGGWAAVAMIFIVAILCCHTGKLLIECMYEKSKKTGIKRRLRVNYPEVAEAVMGRK----GLVILGIIQSVEMFGGVIMYVVLLGTVWADMFQKYTGL--GMKEWAALNCCISLPTLFITKMSIVSWLSMLSVFSLMSALVTLIAFCFTQISVWSLVNVPPF-DPQTFPVGFGIIVFSYCAHAVFPSIEGSMRKPEQFNGMMNSSFLLAAIVKGALGTFMVLTFGNLTEEVATVNLAAYPIWSKVATFLVIGNVLLAIPLGMFVV-----SLTFDDAFLTYFPHLNRDSQSVEMFGGVIMYVVLLGTVWADMFQKYTGLGMKEWAALN---CCISLPTLF 2874
D K A+ AGWNV+N IQG +LG+PYA+ GG+ + +I A++CC+TGK+LI C+YE+++ G R+R +Y +A A + G ++ + Q +E+ I+YVV+ G + M+ + GL K W+ + + LP F+ + VS S+L + + +IA+C ++ W+ V + D + FP+ GIIVFSY + PS+EG+M++P +F+ MMN + + A ++KG LT+ + T+EV T NL I + V FLV LL+ PL F F + +FP ++ +G + +++ T+ ++ + L M +L C LP+LF
Sbjct: 112 DKPKITAWEAGWNVTNAIQGMFVLGLPYAILHGGYLGLFLIIFAAVVCCYTGKILIACLYEENED-GEVVRVRDSYVAIANACCAPRFPTLGGRVVNVAQIIELVMTCILYVVVSGNL---MYNSFPGLPVSQKSWSIIATAVLLPCAFLKNLKAVSKFSLLCTLAHFVINILVIAYCLSRARDWAWEKVKFYIDVKKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWADETKEVITDNLPG-SIRAVVNIFLV-AKALLSYPLPFFAAVEVLEKSLFQEGSRAFFPACYSGDGRLKSWGLTLRCALVVFTLLMAIYVPHFALLMGLTGSLTGAGLCFLLPSLF 476 HSP 2 Score: 149.828 bits (377), Expect = 5.714e-37 Identity = 114/316 (36.08%), Postives = 162/316 (51.27%), Query Frame = -1
Query: 1030 SQSVEMFGGVIMYVVLLGTVWADMFQKYTGL--GMKEWAALNCCISLPTLFITKMSIVSWLSMLSVFSLMSALVTLIAFCFTQISVWSLVNVPPF-DPQTFPVGFGIIVFSYCAHAVFPSIEGSMRKPEQFNGMMNSSFLLAAIVKGALGTFMVLTFGNLTEEVATVNLAAYPIWSKVATFLVIGNVLLAIPLGMFVV-----SLTFDDAFLTYFPHLNRDSKFHWVWLLITRPXXXXXXXXXXIMVPHFGLLMGVIGSLTGTCLCFLFPCYFHLKLRWNTLAKWEVAVDVAIMVFGLIAGSLGFAFSTKALIMTY 1953
+Q +E+ I+YVV+ G + M+ + GL K W+ + + LP F+ + VS S+L + + +IA+C ++ W+ V + D + FP+ GIIVFSY + PS+EG+M++P +F+ MMN + + A ++KG LT+ + T+EV T NL I + V FLV LL+ PL F F + +FP W L R L+ F L +AI VPHF LLMG+ GSLTG LCFL P FHL+L W L +V DVAI V G I GF S + LI Y
Sbjct: 209 AQIIELVMTCILYVVVSGNL---MYNSFPGLPVSQKSWSIIATAVLLPCAFLKNLKAVSKFSLLCTLAHFVINILVIAYCLSRARDWAWEKVKFYIDVKKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWADETKEVITDNLPG-SIRAVVNIFLV-AKALLSYPLPFFAAVEVLEKSLFQEGSRAFFPACYSGDGRLKSWGLTLRCALVVFTLLMAIYVPHFALLMGLTGSLTGAGLCFLLPSLFHLRLLWRKLLWHQVFFDVAIFVIGGICSVSGFVHSLEGLIEAY 519 The following BLAST results are available for this feature:
BLAST of TCONS_00021193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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