TCONS_00021384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021384
Unique NameTCONS_00021384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021384 ID=TCONS_00021384|Name=TCONS_00021384|organism=Clytia hemisphaerica|type=transcript|length=1615bp
TGTTCCAGTGCAGTTTTGATTGTTGGTTGAATAAAATTATCATCCCATTT
TATATATAAACTTGTCCTCTTATCTCTAGTACCAAGgTATAATTGTCAGG
AATGACAGTCAGAAGTATTGTGAAGATCTCTTTGACAGCTTCTGTAACTT
TAGTTACAGGAAGTTATCTGTTTGAAGCGACAAACAAGGTCATTGCAGAA
GAGAATACTGAGCACATAGATTCATCAGCCAGTAAAACATCCAACAATTT
CGAGATCAATGGCAAAATTGCAGTCATTGGAACTGGCATAGGTGGAGCAT
CAGCAACGCACTTTCTAAGAAAGCTACTTGGAAATGAAGTGCAAATTGAt
gtatttgagaaaaatgatCACCTTGGTGGTCGTATGCATGCTATTGATGT
GAATGGGGAACAGATAGAATCTGGTGGCACTATTATTCATTCATCAAATC
GATACATGGTAGACTTTGCCAAAGACTTAGAGATGGATACAAACATAGCA
ACCGATGATGCAAAGCTTGGCATCTACAATGGGAAAGAATTTGTCTTTCT
CCAAAGCTCATGGAAATGGCTGAATGTTGCCAAACTGATATGGCGTTATG
GACCGTTCTCTCTGAGAAATATGGATAGCGCTTTGACGAGAATGCTGAAC
GACTTTGTCAAGATTTACGATATTCAAGAGAGTGAACAAGCTTTCAGaaC
AGTCCCTGAGATGCTTAATGCCTTGGGCGGTGATCATTTTGTGGAATTGA
CTAAGAATACAAGTACACAAGCGTTGAAAGATGAAGGTGTAGGGGACACT
TTGATTCAAGAACTGATCACAGGAATATCCAGATGCAATTACGGACAGTC
CACTGATGACGTGAACGGTTTTACAGTTGCCCCACAAAAGACTGTCAAGG
GAGTGGTCACAGAACCACCTGTATATAAAATCTTCTCCCGAGAGCCTTTA
TCGGATGCGTTGGTCAAAAAGATGTTTATCGTCAATTCtgataatgaaaa
taaaacatcaTCTGACCGAACTGTTGTCAGTTGGCTAGCCTATCCACATT
ATTCTCCACCTGAGAAGTTTTTACCGTTCGAATTGGACGAAGGAGTGTTT
TATGTGAATGCAATTGAACGAGCAGCTTCGGCAATGGAAATGAGTGCTAT
TGGTGGACGCAATGCTGCTTTGTTAGCTTATCATTATCTGAAAGGTGCAC
CAAAGAAATAAGTTTTATTGTCTTCTTCATCTGTATAAAGGCTGGTTGGT
TCCACTTGCGCGCGTtgtgatcgcactttttcgtgcaaagcttccacgct
atttgTTAAAAGAACAATGAAACATTCCATTGGCGTGATCCGGCGTaatg
gttgaaaaaagtttaaaaaagtttaaaatgtattcaacttttttttcgag
caagcgctacatttttaagatcgatgagctggagtttttataagatactt
cactaattggtcatttgaagtaatagagatgacgcgttctttagaaaaag
taataaaatgtttttattatatcttAACGACCATGCAAATCacataaaag
cttgtaaaaactccagcttgtcccatttTTAAGAcgagcaaaaaggattg
aagccaaaaaggtGC
Run BLAST on NCBI

transcript from alignment at sc0000385:416252..424381-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021384 ID=TCONS_00021384|Name=TCONS_00021384|organism=Clytia hemisphaerica|type=transcript|length=8130bp|location=Sequence derived from alignment at sc0000385:416252..424381- (Clytia hemisphaerica)
TGTTCCAGTGCAGTTTTGATTGTTGGTTGAATAAAATTATCATCCCATTT
TATATATAAACTTGTCCTCTTATCTCTAGTACCAAGGTAAGTATTTTCCC
TTCTATTTATTAGAAGGCACTTATAAAAAGTCTGCAACACTTGCAACACA
TGATAATTTTTTTGCTCAGAGACATGCTCAGACACAGCCCACAGCTCCTT
TGTTAAAAGCCTCGTAAGATCTTGCTTGCTGCTTGCACTTTTGCTTGCTT
GTAATTGGAAAGGTAGATGTATCATCATATACCACAACAAGTATAGAAAA
GAAGGGAAGTTTGTTTCAGTTAGATTTTTTGACATCCAATTGTATCAAAT
TAACATCCAATGGTGTGGCGTTGATGGAAAAGTGAAAATGTCTATCATCA
CACCACATATTACCTATACAGACAAAAGGTTGGCAAACGATATCATTCAC
CAGGCAGTCTAGACTAAAACTCCCATATCAGGATTATTAGAGCAGACTAG
GCTAGAATTCCCTCTTCAAGGCAATGCTTATTACAAAGTTGACACAACAT
TAATCCATGTAAGAAGTTTATATCGCTGAAATCTGCAACAAAAACATAAG
TGGTCTCTTCTACTTCTACGGATTGCTTGGCAGTGTTCCTTTGCAGACTG
TTTATCACATTTCCACCAATGATATTGCAGCATTTCACACGACTCTGCTT
TTTGGTGGTCCCTCTGACCTTTCAGTGCCTTGCACACTTTGCACAATGGG
CAAGTGTAAAATGTCAAGAAATGGGAGATTTGGAAAATTTTCTAAGTTTG
ATTTTTTTGCATAAAGCTCTATATAACTAACTGTAACCCCTGAGGCGCTG
TGGTATAGTGGTCATTGACCTTGGCAGTTAGTCACACTAGCGTCCCACCA
AAATGAGTATCAAAGATTAATGCTGCGAAAACGCTATATCGTTTACTTGA
CTCTCAAGCAAAAAAATGCGCCGCAAAACTTCTAAAGGGATTCATGAAAA
AATAACCCGGCGCTTTTTGATGAAATTAACATTTTCAAAAACTTTGAGAA
ATTGCCTAAAATTTGAGCCATAGATGAAAAAATTAGAGCCAAGCCAACCT
TGAAAACTAATTTGAAGATCAACTTCCCAAGAAAAAGATCTACGGGGGAG
GAGGAATCCACCTAGATCCGCGCACCGCCGGATAGGCTATCTCCCGGAAA
TTTTGCCGGACCTCAAACAATGACCCAATGCGGAATTGTTTTTACTTTAG
CGTATAAACAAGGCCTTAAAAATCGAAGGGCTGTCTCGGGAATTGAATGA
CAAATTTTGGTTGGTTGATTTTGGCTGCTGCACGTTTTATTTTGTTTCCA
ACTTTCAAGTTTTAATTAATATTGTCTTGCGAACTTGATTCAGGTAACTC
TCATCCTTGTTGTTGAAATTTATCCTGTAGATGACTGATGTTGTTTTTTT
CTGAAAGCTTAATTTCCTAGTGTGACTAACTGCTTGGTTGCTGAACAGGC
GACTGAGGTTGTTGTTTCGTGTGTTGTGTAAAACTGCTTATAATTTGGCT
GTTTTTTTAATTGAAAGGATTGCAATGTTTACTGAACTTCTAGTTTGATG
GATGAACTTGTTCGATAAGAATGATACCAAGAATTTCATTCAAGGTTTGT
TTTGATTATTTTACAGATCCGGTGTCGAGATTGCAAGACCTATGTCGAGA
TTAGACGACTCTACGGTAGTCAGTCCAAGGTGCTGACGGGGCGCTCATTG
AAAGCGTCTATAGTTGTGAAAATAGGCCTCAAAGCCGCTGCAACTCAACC
AAATAGAAATAGAAATAGAAACCATGTTGGCTTGAAATAGAAAATGAATC
CACTGAAAACGAAAGTAAAATCGGCTAACACTCCAAATCTCGTAATCTTG
ATATGATAGGAGTTTTAGTCAGTTAGTCTAAACTGCCATGCAAGTGAAAC
TTTTCAATCTGCGGAATTAGATGGAGGTTCGGTTATTATCAGTTAGGGTT
AGGATGAGGGTTAGGGTTGGAGCTCGAGAGTCACAATATATAGCCAAAGG
CCTTCTTAGGGGCAACCGTACCCTGAGACTTAACTTATGATCCCGCAGGT
ATTACTTTAGAGTTCTGCCAAATTCCTTTTCCAGTTCTGCCAAATTACTA
AATTTTTTCTAAGTATATGGTGTTTCCAATCAGATCTCAAAAAGCTTGCA
TTCAAGATCTGTCTTTTTAGCATGTCAGACATATTCAAAGAACATAAAAC
TTACTTGCTAACCACTAGTATGGTATTTATCACACACTTATAGTTACTTG
TATCAAATTAAATGTTATCTTGACATTCTTGCTGTCTTGTTAAATGCTTT
GTTTTCTTCAGAGTTTATATCATTCATTTTGGAGAGGCCGGCCAGAGAGG
GGACTTTGTGAACATTGGATTTTTTTCCCTTTTGCAGTTATCTGGAACAT
TAGAGTTTATTAAAATTGTAGGATTTAGGACCTCTCAGGATAATATTTAC
ATGAAACTTACATGCATAATTGTTTTTTTGTTTAAAGTGTAATCTTGTGA
TTTAATTTTCAGTTTTTCTTTTTAAAATACTCATATGCTGAAAATTGTCT
CCAAGCAACTAAATAGTATCTGAAAATAGGCAGGTAATTGACCTAAATTT
ACCAAAAGGCTGTCAGGCCATATTTTAGGCAGGGCAGAACAGCGTCCCTT
GGTGGCCAAAAAGGGCACTTTTTGTAGTGTTTTACCGAAAAAAAACCGAA
TTTTTAGTGATTTCAGGAAGGGCAGCGTCTGATAAGCGGCTGCTAAAAGG
GCATGAAAAATGGTCGGCTGCTAAAGGTCCGGACAATTAAAAAGTTGGCA
TTTTCAAAGAATCTATTTCAATAATTGGATCAGTCCCAGACCAGCCTCGA
TTGTCTGGTCGAAATTCCTTAAAAAATGTTGTTTTAATTTCATTCTTACT
GACAACCACATGGGCCAGCAAAATAAGCAGCCCGGACTGGTGAAACAAGT
CGCCCAGACCCTCTGACGGTCAGGACCAGACAAAAGCTACTATGACTGTA
GTCAGGTAGAATTGCATAACTACCCAGACACCATGGTTAAAAGCTGCTAT
AACTGGTGGAAATTTTTACATGGTTTTTTGCAGGTTCGAAACAAAACTTG
ACCTTGACAAGGCCTGTCTTGGACAAGTCCTGAAAAAGACACTTCCCAAA
ATATCTATTTAAAGAACCAAACAAATTTCTCAGGTATTTTAAATACACCC
CTGTCTCAGTGCCCCGGTGGCCTGATTTCAGTACATGATTTTTTTCAGTA
CATGGTTTCAGTACATGATTTTTTCCTACGTCACTGCAGTAATCAAATTT
TTATTGCACTCATTTGTGAATTGAGATATAAATTGAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTCTTGAATTCCCAAGCCATTTAGGATGATTA
CAAATGAGTGCAATAAAAATTTGATTACTGCAGTGACGTAGGANAAAAAA
TCATGTACTGAAACCATGTACTGAAAAAAATCATGTACTGAAATCAGGCC
ACCGGGGCACTGAGACAGGGGTGTTTAAATTGCCTGGATGCTCACATAAA
TCAATAATTCATGGTTTAAATAAAACATTTTTTTCCAGGTATAATTGTCA
GGAATGACAGTCAGAAGTATTGTGAAGATCTCTTTGACAGCTTCTGTAAC
TTTAGTTACAGGAAGTTATCTGTTTGAAGCGACAAACAAGGTCATTGCAG
AAGAGAATACTGAGCACATAGATTCATCAGCCAGTAAAACATCCAACAAT
TTCGAGATCAATGGCAAAATTGCAGTCATTGGAACTGGCATAGGTGGAGC
ATCAGCAACGCACTTTCTAAGGTATTTCATTCTGTTTCTAAGAAGCTATA
TTTTGAACAGATTAATTTTGACAAGAGATTTAATTTCATGAATAAAAAAA
TTTGTTTAATTTTTTAATTTGTTTAATTTTTAGTTTTGCCAATCAGCATT
TTGAAAAATTTCATGTTTATTAAATTTGGTTTAAATAACCAAAAATCAAT
CTGGAGTGGCCCTGGAAACGAAGTTTTTTTGTCTCAAATAGTAAATTTAC
AGGGTCAGGATCATATTATTTACCTTACCCCAATTAATAACATGAAAGAG
TAATGTGACTTGATAGCAAGTGACACAGTAGTTATTTTTTTATATTATGA
ATAGATAACCCAACAAATGCAATCTGGATTATGGATTTAGATTGGTCATG
CAAGTATCCATAAGCAACATTTATGTTACTACTTAACAATTCTTGCCCTT
TGCACCGACATTTCTGACTGCTTCTGAAACCCGGTATTATTGGTGGGGTT
GTAATTGTGCTTTTATCAATGATTGATTATCTTTTAGAAAGCTACTTGGA
AATGAAGTGCAAATTGATGTATTTGAGAAAAATGATCACCTTGGTGGTCG
TATGCATGCTATTGATGTGAATGGGGAACAGATAGAATCTGGTGGCACTA
TTATTCATTCATCAAATCGATACATGGTAGACTTTGCCAAAGACTTAGGT
GAGATTATGTTTGTCACAAGATAGAGCCTGTTTGTTCTTGCCATTGTTCT
TCCATCTGGAAGGTCGTTAAAATGGGGACGTCCCTATTTGTTTTGACTCT
TTCAGATGGAGCTTAATGATTCCATCTGATTTCCAGCTGGGGGGGGGGGG
GGGGGTATCAAACAAAATTAAGATTGGCCGGTTTGGGAAACTAACTATGG
AAACTATGGACAAAGAAGCCAGCTTCTTGGAGTTTGAGTTGTGAGATCAA
CTCTTAAACCTTACATCTTTTCTATTTTTTTGCCAACAAATAGCAAATTT
AATGTTGGTCAAATTGTTACCAGAATTTGCTGACACAGCAAAAATGAATA
GTTGTAATATATCATCCTAAAACTTTATTTAACAAATCTTCCTTGACAAG
AAGATTAGTTGGTTAAACCCTACCAAGTACCATGTACAAAGTTGCCACTC
TGGCAATTTTTATAGTTCAAAATTAGTACAAACCTCCCTCTGATATTTTC
AAAGCTTAAAAAGTTAATAGTTTTTTTCAACCTTTCATTCCCAGAGATGG
ATACAAACATAGCAACCGATGATGCAAAGCTTGGCATCTACAATGGGAAA
GAATTTGTCTTTCTCCAAAGCTCATGGAAATGGCTGAATGTTGCCAAACT
GATATGGCGTTATGGACCGTTCTCTCTGAGAAATATGGATAGCGCTTTGA
CGAGAATGCTGAACGACTTTGTCAAGATTTACGATATTCAAGAGAGTGAA
CAAGCTTTCAGGTACTATGTATAATCAATTGTGTTTCTACTGGGAAGCTC
TGGGAAAGAACCAAGCTTTTTGGTAGATTCCACTTAGCACACTCCACATT
GCCTTTGTTTCCAGTATAGGAAGGAAACTCGAGATTAGATTTTTAGATAT
TCTAAGGTTGGGATGCCATTGATATTCAAGCACAGTTTAAATCACGCATT
CAGGATAGCAGAAAAATGTGCTGCAATCAGAATTAGCTCTCCAACTAAAA
ATTAATTCTCATTTAAACCCATTTTTAGTCAATGAATGAATGAAGTACTG
TAAGCAAATATTAAGAACATTCAAATCTAAAAACCACAAAATAAAACTAT
AAAATAAGTAAGAACAATTAAAAGTCAAGATTTACTGTAAAACATACGTG
TCGTATCAAACAGTATCGATTCATCTGGATTTGACAAAATGCCTAAAGAG
CTACATACACTACACAATATATTGATAAATAATATGGTTTGCGGACCATA
ATGTACTAAGTAAGTATCAGGGACTTTGTTATAAAAAGGAATTTTCTTTC
TGTACAAATATATTGTTGGAATATTTCAAATCGACCTGACAATATATTGC
GGAACCTTTTAAATATATTACCGGCATTCAGCAATATATTATCAATATTA
TTGCCTGACAATATATTGTGTAGTGTATGTAGCCCTTAACACACTTGTTG
TTTTTTTAGAACAGTCCCTGAGATGCTTAATGCCTTGGGCGGTGATCATT
TTGTGGAATTGACTAAGAATACAAGTACACAAGCGTTGAAAGATGAAGGT
GTAGGGGACACTTTGATTCAAGAACTGATCACAGGAATATCCAGATGCAA
TTACGGACAGTCCACTGATGACGTGAACGGTTTTACAGGTATTGTTTTTC
GTCATTTGCGATAGTTTTATCTTCTCTAACTCCCTTAAATATTCTATTAA
AGACTTCCTTAGAGGTTGTTAATTTTGATAAATTAAAGGCTGGCTTTTTG
CAAGGATTTAAAAATACTAAATAAGCCAAACGTAGATAAATTGAAATAGT
TGTTTTTGTTGATTTTTCTATGTTGAACCTCAAAGATATCTTACATAAAA
GACTGGAATAGAACTTCTTCCTGAAGGGCTACATACACTACAAAGTTCTA
CTCACAATATATTGGAAAAGTGTCCAGCTCGATTTGCAATAATCAAACAA
TGAAGGGGGATCGTTACGGAAAGAAAATTTCTTTTTATGATCTAGAGAGA
AAATTGTTATCACCATTTGATAGTATGGTCAAACCATATTGTACGCCAAT
GGACTGTTCTATAAAAAACCATACAGGGGGGGTGAACGAACCTTTTCAAG
TCAAAAAGAAATTATTCAAACTATTAATTAATATTAAACCAAATTATTAT
AACCACTAGAAAATGGCAAAATCTGCAAAAATACCCTCTGAAAAATTCTT
TTCGTACCTTAAAGTGAGGGTGGACCAACTAAAATCAGTCATTTAATCCC
TGAAAGTTTTAAAATAACTTTACTCCCTCGGAAAAATGAAAAAACACCCC
CTGGAAATTCTTCTCAGATCACCCTCTGGAAATGTTGGTCCACCTCCCTG
TATGGATATAAAATGAAATGGCCCAATTATATTGTGCAGTCTAAGTAGCT
CTACATTCCATTTGTCAAAAGGTTTTGTTTCTTTGGCTGGTGCTCAAGAA
GGTGCTTTATGGAATGTGAAAGATGGTAATTATAAGGTCCCGCAATCACT
GATAGAAAACTCTAAAGCTAACATTCGTACGAATACAAAAATCACCTCTA
TTAAAAGATACGAGAGAGACAATAAAGTGAAATATGAACTCGAGGGAGCA
CCAAAAAATGAATTTTACGATGCAATCATTGTCGCAGCGCCTTTAGAAGT
TCCTTCTTGTTTTCTGGACTGTACCAAATGCAAGAATTGGCCTTGTAAAG
AAGAATTACAGAAATACCAAAAGACAATCGCAACTTTCATACAAATGCCT
TTGAACCATGAGTATTTTGGTGTCAAATGCAAAGAAGACATGGCAGACGT
TGTTATTACAACCGATTCTAAGGAAAATGCTTTTTCAACAGTTGCCCCAC
AAAAGACTGTCAAGGGAGTGGTCACAGAACCACCTGTATATAAAATCTTC
TCCCGAGAGCCTTTATCGGATGCGTTGGTCAAAAAGATGTTTATCGTCAA
TTCTGATAATGAAAATAAAACATCATCTGACCGAACTGTTGTCAGTTGGC
TAGCCTATCCACATTATTCTCCACCTGAGAAGTTTTTACCGTTCGAATTG
GACGAAGGAGTGTTTTATGTGAATGCAATTGAACGAGCAGCTTCGGCAAT
GGAAATGAGTGCTATTGGTGGACGCAATGCTGCTTTGTTAGCTTATCATT
ATCTGAAAGGTGCACCAAAGAAATAAGTTTTATTGTCTTCTTCATCTGTA
TAAAGGCTGGTTGGTTCCACTTGCGCGCGTTGTGATCGCACTTTTTCGTG
CAAAGCTTCCACGCTATTTGTTAAAAGAACAATGAAACATTCCATTGGCG
TGATCCGGCGTAATGGTTGAAAAAAGTTTAAAAAAGTTTAAAATGTATTC
AACTTTTTTTTCGAGCAAGCGCTACATTTTTAAGATCGATGAGCTGGAGT
TTTTATAAGATACTTCACTAATTGGTCATTTGAAGTAATAGAGATGACGC
GTTCTTTAGAAAAAGTAATAAAATGTTTTTATTATATCTTAACGACCATG
CAAATCACATAAAAGCTTGTAAAAACTCCAGCTTGTCCCATTTTTAAGAC
GAGCAAAAAGGATTGAAGCCAAAAAGGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011972XLOC_011972Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021384-exon-sc0000385-1575043694:424296..424381TCONS_00021384-exon-sc0000385-1575043694:424296..424381Clytia hemisphaericaexon
TCONS_00021384-exon-sc0000385-1575043694:420511..420743TCONS_00021384-exon-sc0000385-1575043694:420511..420743Clytia hemisphaericaexon
TCONS_00021384-exon-sc0000385-1575043694:419834..419994TCONS_00021384-exon-sc0000385-1575043694:419834..419994Clytia hemisphaericaexon
TCONS_00021384-exon-sc0000385-1575043694:419071..419287TCONS_00021384-exon-sc0000385-1575043694:419071..419287Clytia hemisphaericaexon
TCONS_00021384-exon-sc0000385-1575043694:418194..418372TCONS_00021384-exon-sc0000385-1575043694:418194..418372Clytia hemisphaericaexon
TCONS_00021384-exon-sc0000385-1575043694:416252..416990TCONS_00021384-exon-sc0000385-1575043694:416252..416990Clytia hemisphaericaexon
TCONS_00021384-exon-sc0000385-1510915933:424296..424381TCONS_00021384-exon-sc0000385-1510915933:424296..424381Clytia hemisphaericaexon
TCONS_00021384-exon-sc0000385-1510915933:420511..420743TCONS_00021384-exon-sc0000385-1510915933:420511..420743Clytia hemisphaericaexon
TCONS_00021384-exon-sc0000385-1510915933:419834..419994TCONS_00021384-exon-sc0000385-1510915933:419834..419994Clytia hemisphaericaexon
TCONS_00021384-exon-sc0000385-1510915933:419071..419287TCONS_00021384-exon-sc0000385-1510915933:419071..419287Clytia hemisphaericaexon
TCONS_00021384-exon-sc0000385-1510915933:418194..418372TCONS_00021384-exon-sc0000385-1510915933:418194..418372Clytia hemisphaericaexon
TCONS_00021384-exon-sc0000385-1510915933:416252..416990TCONS_00021384-exon-sc0000385-1510915933:416252..416990Clytia hemisphaericaexon
TCONS_00021384-exon-sc0000385-1491911889:424296..424381TCONS_00021384-exon-sc0000385-1491911889:424296..424381Clytia hemisphaericaexon
TCONS_00021384-exon-sc0000385-1491911889:420511..420743TCONS_00021384-exon-sc0000385-1491911889:420511..420743Clytia hemisphaericaexon
TCONS_00021384-exon-sc0000385-1491911889:419834..419994TCONS_00021384-exon-sc0000385-1491911889:419834..419994Clytia hemisphaericaexon
TCONS_00021384-exon-sc0000385-1491911889:419071..419287TCONS_00021384-exon-sc0000385-1491911889:419071..419287Clytia hemisphaericaexon
TCONS_00021384-exon-sc0000385-1491911889:418194..418372TCONS_00021384-exon-sc0000385-1491911889:418194..418372Clytia hemisphaericaexon
TCONS_00021384-exon-sc0000385-1491911889:416252..416990TCONS_00021384-exon-sc0000385-1491911889:416252..416990Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:416252..424381 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.529047	0	0.142248	1.12766	0	0	0.29203	0.196094	0.880693	1.1285	1.02126	0.206165	1.99781	0.0249818	0	0	1.31163	0	0.526811	1.32798	0.839101	0.953363	0.82273	0.22165	1.19455	0	1.78021	1.00469	0.255835	0.0466135
Blast
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BLAST of TCONS_00021384 vs. Swiss-Prot (Human)
Match: PCYOX (Prenylcysteine oxidase 1 OS=Homo sapiens GN=PCYOX1 PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 9.641e-40
Identity = 79/194 (40.72%), Postives = 123/194 (63.40%), Query Frame = 3 
Query:  300 SATHFLRKLLGNEVQIDVFEKNDHLGGRMHAIDVNGEQIESGGTIIHSSNRYMVDFAKDLEMDTNIATDDAKLGIYNGKEFVFLQSSWKWLNVAKLIWRYGPFSLRNMDSALTRMLNDFVKIYDIQESEQAFRTVPEMLNALGGDHFVELTKNTSTQALKDEGVGDTLIQELITGISRCNYGQSTDDVNGFTVA 881
            SA ++LR+  G +V+ID+FE+ + +GGR+  + V G++ E+GG++IH  N +M  F KDL + + +      LGIYNG+  VF +S+W  +NV KL+WRYG  SLR M   +  +L+ F++IY  Q  + AF +V ++L+ALGGD F+ +   T  + L+  G  +  + E+I  + R NYGQST D+N F  A
Sbjct:   48 SAAYYLRQKFGKDVKIDLFEREE-VGGRLATMMVQGQEYEAGGSVIHPLNLHMKRFVKDLGL-SAVQASGGLLGIYNGETLVFEESNWFIINVIKLVWRYGFQSLR-MHMWVEDVLDKFMRIYRYQSHDYAFSSVEKLLHALGGDDFLGMLNRTLLETLQKAGFSEKFLNEMIAPVMRVNYGQST-DINAFVGA 237

HSP 2 Score: 87.0409 bits (214), Expect = 5.065e-18
Identity = 48/93 (51.61%), Postives = 58/93 (62.37%), Query Frame = 3 
Query:  921 VYKIFSREPLSDALVKKMFIVNSDNENKTSSDRTVVS-WLAYPHYSPPEKFLPFELDEGVFYVNAIERAASAMEMSAIGGRNAALLAYHYLKG 1196
            V+KIFS+E L+ A + K+F+         S D  V   WLAYPHY PPEK     L + ++Y+N IE AASAMEMSAI   NAALLAYH   G
Sbjct:  404 VWKIFSQETLTKAQILKLFL---------SYDYAVKKPWLAYPHYKPPEKCPSIILHDRLYYLNGIECAASAMEMSAIAAHNAALLAYHRWNG 487
The following BLAST results are available for this feature:
BLAST of TCONS_00021384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCYOX9.641e-4040.72Prenylcysteine oxidase 1 OS=Homo sapiens GN=PCYOX1... [more]
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