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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021740 ID=TCONS_00021740|Name=TCONS_00021740|organism=Clytia hemisphaerica|type=transcript|length=1047bp
GTATTTTACTtcgtttttgaatattttgcacTTGAGTGGGTTTAGCTTCA
TGTGATGGGTAGCCATTCTCACCAGAATCTGTTCCAGGTCCGAAAGGTGT
TCATCAAATGTTTTGCTGTAAGCTAACACATCATCAAGGTAAACTGCACA
GATTTGATGTAGCAAATCCTCCATAATCTCATTGACTTTCCGCTGAAATA
CCGGGGGAGAGTTTGTCAAACCCATCGGAATCCTCACCCATTCTTACAGG
GCCCATGGTGTAGCAAATGCTGTGAATTTCCGTGAGTCTTCATGTACAAA
TCCTTGGTGGTATGCTTTTGTCAAATCCAACGTGCTAAACCATCTCTTCC
CCCCAAGATTTTCAATCACATCATTAATTCTGGGTATGGGCATCCGATCT
GGAATTGTTCGTTGATTTAACTCACGATAGTCCACACACAGTCTCAATCC
GCCGCAGGATTTTCGAACACATACAATTGGACTTGCGTAAGgggattgtg
atttttgaatgaAACCATTCATCAACAGGGTGTTGAGAAACTCTTTGACC
TCCGTATAGAGCTGGGCTGGAATCTTCCTGTATGGTTTGTTGAATGGCAC
TTCatcttttaaattgattttcatCTGAAGACTTTCAATGTTGCCAATGT
CAAATTCATCTCTCGCAAAGCATTGTTTGTATTTCACGATTAACTGTTCC
GCTTTGATTCTCTGTTCCTCTGTTAGATGTGATAGATCAACTGGTGGCAT
CCAGTCCTCAGGAGGTGTTTCTGATACTGCCACTTGACTACAATCAATAT
TCTGCGTAGGACACATTTTTCCCCATAATTCTGAGACCTCCTTTACTTGT
TGAATTGTACCCAAGATTTCTCCTCTCCGCAAAGTGGCGTCAAACTGGGA
GTTATTCTGAATTGGGATGCGCAACTTTTTCAGACTTTGTCTTGTGACAA
ATTCAGGACTTGATAATTCAGCATGAAGCAACAAATTGGGTTGAAATGCC
ACTGGACCAGCCTTGAATTTTCCTGCTACCAAACAATTGAGCATAAC Run BLAST on NCBI protein sequence of TCONS_00021740-protein >TCONS_00021740-protein ID=TCONS_00021740-protein|Name=TCONS_00021740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
VMLNCLVAGKFKAGPVAFQPNLLLHAELSSPEFVTRQSLKKLRIPIQNNS
QFDATLRRGEILGTIQQVKEVSELWGKMCPTQNIDCSQVAVSETPPEDWM
PPVDLSHLTEEQRIKAEQLIVKYKQCFARDEFDIGNIESLQMKINLKDEV
PFNKPYRKIPAQLYTEVKEFLNTLLMNGFIQKSQSPYASPIVCVRKSCGG
LRLCVDYRELNQRTIPDRMPIPRINDVIENLGGKRWFSTLDLTKAYHQGF
VHEDSRKFTAFATPWAL Run BLAST on NCBI transcript from alignment at sc0000393:238978..240024 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021740 ID=TCONS_00021740|Name=TCONS_00021740|organism=Clytia hemisphaerica|type=transcript|length=1047bp|location=Sequence derived from alignment at sc0000393:238978..240024 (Clytia hemisphaerica)
GTTATGCTCAATTGTTTGGTAGCAGGAAAATTCAAGGCTGGTCCAGTGGC
ATTTCAACCCAATTTGTTGCTTCATGCTGAATTATCAAGTCCTGAATTTG
TCACAAGACAAAGTCTGAAAAAGTTGCGCATCCCAATTCAGAATAACTCC
CAGTTTGACGCCACTTTGCGGAGAGGAGAAATCTTGGGTACAATTCAACA
AGTAAAGGAGGTCTCAGAATTATGGGGAAAAATGTGTCCTACGCAGAATA
TTGATTGTAGTCAAGTGGCAGTATCAGAAACACCTCCTGAGGACTGGATG
CCACCAGTTGATCTATCACATCTAACAGAGGAACAGAGAATCAAAGCGGA
ACAGTTAATCGTGAAATACAAACAATGCTTTGCGAGAGATGAATTTGACA
TTGGCAACATTGAAAGTCTTCAGatgaaaatcaatttaaaagatGAAGTG
CCATTCAACAAACCATACAGGAAGATTCCAGCCCAGCTCTATACGGAGGT
CAAAGAGTTTCTCAACACCCTGTTGATGAATGGTTtcattcaaaaatcac
aatcccCTTACGCAAGTCCAATTGTATGTGTTCGAAAATCCTGCGGCGGA
TTGAGACTGTGTGTGGACTATCGTGAGTTAAATCAACGAACAATTCCAGA
TCGGATGCCCATACCCAGAATTAATGATGTGATTGAAAATCTTGGGGGGA
AGAGATGGTTTAGCACGTTGGATTTGACAAAAGCATACCACCAAGGATTT
GTACATGAAGACTCACGGAAATTCACAGCATTTGCTACACCATGGGCCCT
GTAAGAATGGGTGAGGATTCCGATGGGTTTGACAAACTCTCCCCCGGTAT
TTCAGCGGAAAGTCAATGAGATTATGGAGGATTTGCTACATCAAATCTGT
GCAGTTTACCTTGATGATGTGTTAGCTTACAGCAAAACATTTGATGAACA
CCTTTCGGACCTGGAACAGATTCTGGTGAGAATGGCTACCCATCACATGA
AGCTAAACCCACTCAAgtgcaaaatattcaaaaacgaAGTAAAATAC Coding sequence (CDS) from alignment at sc0000393:238978..240024 >TCONS_00021740 ID=TCONS_00021740|Name=TCONS_00021740|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at sc0000393:238978..240024 (Clytia hemisphaerica)
GTTATGCTCAATTGTTTGGTAGCAGGAAAATTCAAGGCTGGTCCAGTGGC
ATTTCAACCCAATTTGTTGCTTCATGCTGAATTATCAAGTCCTGAATTTG
TCACAAGACAAAGTCTGAAAAAGTTGCGCATCCCAATTCAGAATAACTCC
CAGTTTGACGCCACTTTGCGGAGAGGAGAAATCTTGGGTACAATTCAACA
AGTAAAGGAGGTCTCAGAATTATGGGGAAAAATGTGTCCTACGCAGAATA
TTGATTGTAGTCAAGTGGCAGTATCAGAAACACCTCCTGAGGACTGGATG
CCACCAGTTGATCTATCACATCTAACAGAGGAACAGAGAATCAAAGCGGA
ACAGTTAATCGTGAAATACAAACAATGCTTTGCGAGAGATGAATTTGACA
TTGGCAACATTGAAAGTCTTCAGatgaaaatcaatttaaaagatGAAGTG
CCATTCAACAAACCATACAGGAAGATTCCAGCCCAGCTCTATACGGAGGT
CAAAGAGTTTCTCAACACCCTGTTGATGAATGGTTtcattcaaaaatcac
aatcccCTTACGCAAGTCCAATTGTATGTGTTCGAAAATCCTGCGGCGGA
TTGAGACTGTGTGTGGACTATCGTGAGTTAAATCAACGAACAATTCCAGA
TCGGATGCCCATACCCAGAATTAATGATGTGATTGAAAATCTTGGGGGGA
AGAGATGGTTTAGCACGTTGGATTTGACAAAAGCATACCACCAAGGATTT
GTACATGAAGACTCACGGAAATTCACAGCATTTGCTACACCATGGGCCCT
GTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021740-exon-sc0000393-1491911889:238978..240024 | TCONS_00021740-exon-sc0000393-1491911889:238978..240024 | Clytia hemisphaerica | exon |
| TCONS_00021740-exon-sc0000393-1510915933:238978..240024 | TCONS_00021740-exon-sc0000393-1510915933:238978..240024 | Clytia hemisphaerica | exon |
| TCONS_00021740-exon-sc0000393-1575043694:238978..240024 | TCONS_00021740-exon-sc0000393-1575043694:238978..240024 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000393 | supercontig | sc0000393:238978..240024 . |
Blast
The following BLAST results are available for this feature:
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