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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022148 ID=TCONS_00022148|Name=TCONS_00022148|organism=Clytia hemisphaerica|type=transcript|length=2949bp
AAGGAACTTCAACGGGATAAATCCGTTGCACGGTCGTCTCGAGGTgagat
acgggatatacagggatCAGTAAAACCGTATTttaatatgcaatgtcttc
ttttttttctcaatcgaacgCGAAGGAGACTGGATACGGTTtatatccca
cctccacgtgatgtcttttgaccaatgaaatcgctaaaatcttactgatg
cgggatAATGATAGATATCCTCTCGGGCATGCCTTCGATGACAGTATTCA
AAGTAATGATGTCAGAATGGGAAATTCCCAGTGGGGGAGAGAATTTTTTA
GATTACAGTAATTTctgtttcttataagaatagAAAATTTATATCCAGAG
CCCAAATTAAAAAGGTTGATTGGATGTGGTGATAAAAGGCATAAGAATGA
AAAAAGTCAATCAAAAAGGTCAGTCTTCGTTCTCTGGCAAGATTTTTTCT
TCAGGTTAATTAGCCCCCTGTTCTTTTAAGTTATTTTTATTGAATGAATG
TTCAGCTGCTTGTGCTTATCGAAAAAATGAGTGAATAAAGTGATTATTAT
GCGGTTACCAAGACGATGCACACTAAGTCGTTCTCCAGCATGGTGCTTTT
TCCCGCGCTCCCTCCTTCTTACTATGTAATGAAATGATGTAATGGTTTAT
TCGTGGTGCAACTCTTTCTCCTCGATTATCCGTGGTCgtattttctaaaa
tcaaaactGAATAATTAAAATTGACTTCAGTTTTCGTGCATATATGACCA
CGAAGACGGCATTTGATTGGCTAAAAGCTACGTAATGGTATAATTTTAGC
AATCCTTGCACcacgaaaaaatatataaacaaagtTTTGGTGCAACATTT
CATCCTTTTTGATTCGAGCGTTTCTGGCATCCAGAAGAAGATCTGAAGTC
TACTGAATTGCTGATTGATTGGTTACTTTCAAGGACATCCAGTGCTTTCc
aaacagtttatacatatcacACTTATTGTGAGATAACTTTTTATTGATTT
GGTCAGGTGCTGAGGCTCCTGAAACTGCATTTGAAAGCAAAACACCCAAC
GATCCACATTGGATCTTTTGGGAAGGAAATTAGAACTTTTAGCAACTTTA
ACAGGAGTTAAAGTTGCCAGGCTGTATCTAGCCCCTAAAACCAACTAAAT
ACTTCAAAGAAGAAGTACGGCAGTAGATTGTaccaaaaaatttacaaaaa
atctaccaaaatgTCTCAAAACAagcatcaacaacaacaagagtCCATGG
CTCAACTCCTCTTCGCCCAAATGTTGGCGCTCTTCCAATTTGGAGAAAGC
AGAAAGCAGATTGTGGAGTCCAACGAAAAGTCAGAAGAACGTGTTTTTAA
CCGGTGTGGATCCCCTTCTCTTGTCTCGCAACCAATCCGTTTCTCCTGTT
TGCCTGAAAGTCAACAAAAGTCTTGTCAACCAAAGAATTCAGATCAACAA
GAAGAATCAAGTCAGTCTGATTTTGAATGTGAAGAATTCAAGCCGAAAGC
CGTTGTCTCAAGCCCAGTTGCAGAAAATAATCGAGAAAATAATTGTGAAG
CAAGAAACTCAGCTCAAGACGGAATCAGTTTCGATTGTTCCGAAAGAGCA
TTCGACGTTGCCGATCAAGAAAGAGAATCATTATCTGCAGCGCAATTTGA
GTGTATCCGATATTTTGAAGAAAGAGTATTCAGAGAAATTAACAAGCGAA
CTGTGTTTACAAAGAAACACAACCACAATGGATTCATGCAATCTATACCA
ATCTGTGTCATGTGATTTTGACCAGCTTTTAAATGATATTTACAATGATG
TACAAACAAACGATGATCTATTCTTAGATGAAGTTCTTAAAGAGCTCTCC
TCCGAAACACCATGCAAAGAATCATTTGTATTTGATCAACTCCAGGATGG
TTCAGATTCCCAAGATTTTTCTGAGTTTCCGCTAGAAGATTTTAATGCTA
TGGAATCATACCTAGAACCATCAAGTAATTTATTTACTGAAACaaatttc
aaagactttgatgtCAATCAAGATTTTGTCTCTCCACCTTTGACAGATTC
AACATCGTCAAGTGATATTGAAGACATTTTAAGTGATTTAAATTCACCAT
ATGATCTTGGTCAGAACGAAAATGAATTTGATAAACTAGTTGATACATTA
TTTGATTCAGACTTTATGCATGATGATGCAATCGTTACTAATGACAATCT
AATAAATTGTCAAAAAGACGGTCTCGTAAACGTAGAAGAAATTGAAGTTT
CTCCTGCACTTGAAGTTAGTCGAAAACGTAAACTTACAGACACTTCAAAT
ACTGAATGCAGCACGACGAAATTTGTTAAACACCATGAACAGATAATTCC
ATTGaacttgaaagaaaatgaaagtgaaaaggAAGCAGTGCGCAGgataa
aaaataatgaagcTTCAAAAATTACACGAGCCAAACGAAAGCAAAAACAG
GGGGATTTATTCAAACAAGAAGCTGAACTTCTAAAAAGCAATGCTCAATT
GAAAATCAACATCGAGGTTATGCAAAAGGAAGCAGAAATTCTACGCAAAG
TCCTTGTATCTAAATTGAGCAGCATTAAACCTTAAATTTTCTTATCTTAG
TATTTTTAATTAGTATGTAACAAACGTAAAGTAATATCTTCTAGGGGTCA
ATAGTTAAAATGTATAGTCTAATTTTTATAGACTGAAACTATTTATAaag
tatcttttgaaaaatgtgcgaaaaaagtattaaaatttAACTGGTGTATA
GTTTGATTTAAATTAAAGTCCACTCCAAAACACACCAGAACTTTATTGAC
AAAGTAAAACTGATATTACTAAAATAAGTCTTACATTACAACAGTCTCTA
AGATCCCATTTTCAAATACCTTTCTGGTTTTCTTCCCGAGGTGGTTCATT
TTAGGCTTGAAAACAATGTGAGAAATCGATTTGTGTCCATTGATTGTAC Run BLAST on NCBI protein sequence of TCONS_00022148-protein >TCONS_00022148-protein ID=TCONS_00022148-protein|Name=TCONS_00022148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
MDSCNLYQSVSCDFDQLLNDIYNDVQTNDDLFLDEVLKELSSETPCKESF
VFDQLQDGSDSQDFSEFPLEDFNAMESYLEPSSNLFTETNFKDFDVNQDF
VSPPLTDSTSSSDIEDILSDLNSPYDLGQNENEFDKLVDTLFDSDFMHDD
AIVTNDNLINCQKDGLVNVEEIEVSPALEVSRKRKLTDTSNTECSTTKFV
KHHEQIIPLNLKENESEKEAVRRIKNNEASKITRAKRKQKQGDLFKQEAE
LLKSNAQLKINIEVMQKEAEILRKVLVSKLSSIKP Run BLAST on NCBI transcript from alignment at sc0000406:35433..38537+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022148 ID=TCONS_00022148|Name=TCONS_00022148|organism=Clytia hemisphaerica|type=transcript|length=3105bp|location=Sequence derived from alignment at sc0000406:35433..38537+ (Clytia hemisphaerica)
AAGGAACTTCAACGGGATAAATCCGTTGCACGGTCGTCTCGAGGTgagat
acgggatatacagggatCAGTAAAACCGTATTttaatatgcaatgtcttc
ttttttttctcaatcgaacgCGAAGGAGACTGGATACGGTTtatatccca
cctccacgtgatgtcttttgaccaatgaaatcgctaaaatcttactgatg
cgggatAATGATAGATATCCTCTCGGGCATGCCTTCGATGACAGTATTCA
AAGTAATGATGTCAGAATGGGAAATTCCCAGTGGGGGAGAGAATTTTTTA
GATTACAGTAATTTctgtttcttataagaatagAAAATTTATATCCAGAG
CCCAAATTAAAAAGGTTGATTGGATGTGGTGATAAAAGGCATAAGAATGA
AAAAAGTCAATCAAAAAGGTCAGTCTTCGTTCTCTGGCAAGATTTTTTCT
TCAGGTTAATTAGCCCCCTGTTCTTTTAAGTTATTTTTATTGAATGAATG
TTCAGCTGCTTGTGCTTATCGAAAAAATGAGTGAATAAAGTGATTATTAT
GCGGTTACCAAGACGATGCACACTAAGTCGTTCTCCAGCATGGTGCTTTT
TCCCGCGCTCCCTCCTTCTTACTATGTAATGAAATGATGTAATGGTTTAT
TCGTGGTGCAACTCTTTCTCCTCGATTATCCGTGGTCgtattttctaaaa
tcaaaactGAATAATTAAAATTGACTTCAGTTTTCGTGCATATATGACCA
CGAAGACGGCATTTGATTGGCTAAAAGCTACGTAATGGTATAATTTTAGC
AATCCTTGCACcacgaaaaaatatataaacaaagtTTTGGTGCAACATTT
CATCCTTTTTGATTCGAGCGTTTCTGGCATCCAGAAGAAGATCTGAAGTC
TACTGAATTGCTGATTGATTGGTTACTTTCAAGGACATCCAGTGCTTTCc
aaacagtttatacatatcacACTTATTGTGAGATAACTTTTTATTGATTT
GGTCAGGTGCTGAGGCTCCTGAAACTGCATTTGAAAGCAAAACACCCAAC
GATCCACATTGGATCTTTTGGGAAGGAAATTAGAACTTTTAGCAACTTTA
ACAGGAGTTAAAGTTGCCAGGCTGTATCTAGCCCCTAAAACCAACTAAAT
ACTTCAAAGAAGAAGTACGGCAGTAGATTGTaccaaaaaatttacaaaaa
atctaccaaaatgTCTCAAAACAagcatcaacaacaacaagagtCCATGG
CTCAACTCCTCTTCGCCCAAATGTTGGCGCTCTTCCAATTTGGAGAAAGC
AGAAAGCAGATTGTGGAGTCCAACGAAAAGTCAGAAGAACGTGTTTTTAA
CCGGTGTGGATCCCCTTCTCTTGTCTCGCAACCAATCCGTTTCTCCTGTT
TGCCTGAAAGTCAACAAAAGTCTTGTCAACCAAAGAATTCAGATCAACAA
GAAGAATCAAGTCAGTCTGATTTTGAATGTGAAGAATTCAAGCCGAAAGC
CGTTGTCTCAAGCCCAGTTGCAGAAAATAATCGAGAAAATAATTGTGAAG
CAAGAAACTCAGCTCAAGACGGAATCAGTTTCGATTGTTCCGAAAGAGCA
TTCGACGTTGCCGATCAAGAAAGAGAATCATTATCTGCAGCGCAATTTGA
GTGTATCCGATATTTTGAAGAAAGAGTATTCAGAGAAATTAACAAGCGAA
CTGTGTTTACAAAGAAACACAACCACAATGGATTCATGCAATCTATACCA
ATCTGTGTCATGTGATTTTGACCAGCTTTTAAATGGTAAGTTCTAGAAGA
TATGATTTTACTTGAACCTGGtgtattttaaattcatttgaaggcattga
aattttttgatctttgaaagtttttttgtttgctGCTTCattgttttttg
cttccaatttAACTTTATGttctattttcttatttcttcagATATTTACA
ATGATGTACAAACAAACGATGATCTATTCTTAGATGAAGTTCTTAAAGAG
CTCTCCTCCGAAACACCATGCAAAGAATCATTTGTATTTGATCAACTCCA
GGATGGTTCAGATTCCCAAGATTTTTCTGAGTTTCCGCTAGAAGATTTTA
ATGCTATGGAATCATACCTAGAACCATCAAGTAATTTATTTACTGAAACa
aatttcaaagactttgatgtCAATCAAGATTTTGTCTCTCCACCTTTGAC
AGATTCAACATCGTCAAGTGATATTGAAGACATTTTAAGTGATTTAAATT
CACCATATGATCTTGGTCAGAACGAAAATGAATTTGATAAACTAGTTGAT
ACATTATTTGATTCAGACTTTATGCATGATGATGCAATCGTTACTAATGA
CAATCTAATAAATTGTCAAAAAGACGGTCTCGTAAACGTAGAAGAAATTG
AAGTTTCTCCTGCACTTGAAGTTAGTCGAAAACGTAAACTTACAGACACT
TCAAATACTGAATGCAGCACGACGAAATTTGTTAAACACCATGAACAGAT
AATTCCATTGaacttgaaagaaaatgaaagtgaaaaggAAGCAGTGCGCA
GgataaaaaataatgaagcTTCAAAAATTACACGAGCCAAACGAAAGCAA
AAACAGGGGGATTTATTCAAACAAGAAGCTGAACTTCTAAAAAGCAATGC
TCAATTGAAAATCAACATCGAGGTTATGCAAAAGGAAGCAGAAATTCTAC
GCAAAGTCCTTGTATCTAAATTGAGCAGCATTAAACCTTAAATTTTCTTA
TCTTAGTATTTTTAATTAGTATGTAACAAACGTAAAGTAATATCTTCTAG
GGGTCAATAGTTAAAATGTATAGTCTAATTTTTATAGACTGAAACTATTT
ATAaagtatcttttgaaaaatgtgcgaaaaaagtattaaaatttAACTGG
TGTATAGTTTGATTTAAATTAAAGTCCACTCCAAAACACACCAGAACTTT
ATTGACAAAGTAAAACTGATATTACTAAAATAAGTCTTACATTACAACAG
TCTCTAAGATCCCATTTTCAAATACCTTTCTGGTTTTCTTCCCGAGGTGG
TTCATTTTAGGCTTGAAAACAATGTGAGAAATCGATTTGTGTCCATTGAT
TGTAC Coding sequence (CDS) from alignment at sc0000406:35433..38537+ >TCONS_00022148 ID=TCONS_00022148|Name=TCONS_00022148|organism=Clytia hemisphaerica|type=CDS|length=1716bp|location=Sequence derived from alignment at sc0000406:35433..38537+ (Clytia hemisphaerica)
ATGGATTCATGCAATCTATACCAATCTGTGTCATGTGATTTTGACCAGCT
TTTAAATGATATTTACAATGATGTACAAACAAACGATGATCTATTCTTAG
ATGAAGTTCTTAAAGAGCTCTCCTCCGAAACACCATGCAAAGAATCATTT
GTATTTGATCAACTCCAGGATGGTTCAGATTCCCAAGATTTTTCTGAGTT
TCCGCTAGAAGATTTTAATGCTATGGAATCATACCTAGAACCATCAAGTA
ATTTATTTACTGAAACaaatttcaaagactttgatgtCAATCAAGATTTT
GTCTCTCCACCTTTGACAGATTCAACATCGTCAAGTGATATTGAAGACAT
TTTAAGTGATTTAAATTCACCATATGATCTTGGTCAGAACGAAAATGAAT
TTGATAAACTAGTTGATACATTATTTGATTCAGACTTTATGCATGATGAT
GCAATCGTTACTAATGACAATCTAATAAATTGTCAAAAAGACGGTCTCGT
AAACGTAGAAGAAATTGAAGTTTCTCCTGCACTTGAAGTTAGTCGAAAAC
GTAAACTTACAGACACTTCAAATACTGAATGCAGCACGACGAAATTTGTT
AAACACCATGAACAGATAATTCCATTGaacttgaaagaaaatgaaagtga
aaaggAAGCAGTGCGCAGgataaaaaataatgaagcTTCAAAAATTACAC
GAGCCAAACGAAAGCAAAAACAGGGGGATTTATTCAAACAAGAAGCTGAA
CTTCTAAAAAGCAATGCTCAATTGAAAATCAACATCGAGGTTATGCAAAA
GGAAGCAGAAATTCTACGCAAAGTCCTTGTATCTAAATTGAGCAGCATTA
AACCTTAAATGGATTCATGCAATCTATACCAATCTGTGTCATGTGATTTT
GACCAGCTTTTAAATGATATTTACAATGATGTACAAACAAACGATGATCT
ATTCTTAGATGAAGTTCTTAAAGAGCTCTCCTCCGAAACACCATGCAAAG
AATCATTTGTATTTGATCAACTCCAGGATGGTTCAGATTCCCAAGATTTT
TCTGAGTTTCCGCTAGAAGATTTTAATGCTATGGAATCATACCTAGAACC
ATCAAGTAATTTATTTACTGAAACaaatttcaaagactttgatgtCAATC
AAGATTTTGTCTCTCCACCTTTGACAGATTCAACATCGTCAAGTGATATT
GAAGACATTTTAAGTGATTTAAATTCACCATATGATCTTGGTCAGAACGA
AAATGAATTTGATAAACTAGTTGATACATTATTTGATTCAGACTTTATGC
ATGATGATGCAATCGTTACTAATGACAATCTAATAAATTGTCAAAAAGAC
GGTCTCGTAAACGTAGAAGAAATTGAAGTTTCTCCTGCACTTGAAGTTAG
TCGAAAACGTAAACTTACAGACACTTCAAATACTGAATGCAGCACGACGA
AATTTGTTAAACACCATGAACAGATAATTCCATTGaacttgaaagaaaat
gaaagtgaaaaggAAGCAGTGCGCAGgataaaaaataatgaagcTTCAAA
AATTACACGAGCCAAACGAAAGCAAAAACAGGGGGATTTATTCAAACAAG
AAGCTGAACTTCTAAAAAGCAATGCTCAATTGAAAATCAACATCGAGGTT
ATGCAAAAGGAAGCAGAAATTCTACGCAAAGTCCTTGTATCTAAATTGAG
CAGCATTAAACCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022148-exon-sc0000406-1491911889:35433..37217 | TCONS_00022148-exon-sc0000406-1491911889:35433..37217 | Clytia hemisphaerica | exon |
| TCONS_00022148-exon-sc0000406-1510915933:35433..37217 | TCONS_00022148-exon-sc0000406-1510915933:35433..37217 | Clytia hemisphaerica | exon |
| TCONS_00022148-exon-sc0000406-1575043694:35433..37217 | TCONS_00022148-exon-sc0000406-1575043694:35433..37217 | Clytia hemisphaerica | exon |
| TCONS_00022148-exon-sc0000406-1491911889:37374..38537 | TCONS_00022148-exon-sc0000406-1491911889:37374..38537 | Clytia hemisphaerica | exon |
| TCONS_00022148-exon-sc0000406-1510915933:37374..38537 | TCONS_00022148-exon-sc0000406-1510915933:37374..38537 | Clytia hemisphaerica | exon |
| TCONS_00022148-exon-sc0000406-1575043694:37374..38537 | TCONS_00022148-exon-sc0000406-1575043694:37374..38537 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000406 | supercontig | sc0000406:35433..38537 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004827 | bZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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