TCONS_00022280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022280
Unique NameTCONS_00022280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022280 ID=TCONS_00022280|Name=TCONS_00022280|organism=Clytia hemisphaerica|type=transcript|length=2334bp
CCTATCTCAGCTATTTCTGAATTATTTTCTTCTCTTTATAGGTCCCTTGG
CATTCCAACCGACGCCTTTCAGTCAATCAGGAAATCCAATCATGTCTACT
GTTTCATTCCTGGCCTCTATTGTGGACCCGCGTGTGGCCAGCGCCGCTGC
AAAAGCTGCCGTTGATGAGTTTTCTCGATTAAAAGAAGAGATTCCTGAGG
AGCTTATCGACGCACATGTTGAAAAAGCGAAAGCAGAGATGCCCAATGGT
GTCAGTGAAGAGAAACCCACTGAAGAAGCTGCACCAATGCAAGTTGATGA
AGCTGTACCCACTACAACACCTACTACAAACGCCCCCACTACCGAAACCA
CACCCTCTACAACACCCGCAACTGATCCAGCACAACCACAAGTCAACGGT
GAAGTTCATCAAGACGAGAAACCACAATCAGAGACGCCCACACCCGCCCC
TGCACCACCCAAGGAGCCCAGTGAGgaggaaaagaagaaacttGCAAACC
GCGAGAAAGTTCCGGTGGGCAATATCAAGACTGCGGCCGCCGCTGCTATC
GCCTCTGCCGCTGTTAAAGCAAAGTATTTGGCGCAAGTGGAAGAACGAAA
GATCAAAAGTTTGGTTGCTCTGCTCGTCGAAACTCAAATGAAGAAACTGG
AGATCAAATTGCGCCATTTTGAAGAGTTAGAGACTATTATGGACAAAGAA
CGTGAAATTCTTGAGCAACAACGTCAATCGTTGATTAAAGAACGGCAGGA
ATTTTTCGCTGATCAACTCAAAGCTCAAGAAGCACGCGCATCCAAAACGC
CTGCCATCGCTGATTTCTTTCCACATGGTCCACAGGCTAAACCGGCTGCT
GTTCCAACACCTGAAGAAACACCGGCTGCACCTCCTTCTACCACGGCCGC
CCCAATGATGGGAAACATTCCATCCCAGCAACCTCAACCGACGCCTATGC
AGCCACAACCGACGCCTCCCGCCGGTCTTCTTGCGCAACCACACAGTCAA
ACGGAAAACAAAATCCCCAATCCTGACTTTCTACAACATCAAATGACAGC
CGCAAGAGCAGGCGGAGCAGCGCTTTCAGTTTTATCTCCACTCGACCCAG
CGAAAGGTGATACGCAATCAGATGCTTCAACTACGGGCGTGCAAAGCACA
TCAGGCGAACTGCTCACAGCAAAAGCTCCCATGCCGTTAAGCAGTGCACA
AGAAGACAAAAGTAAACCTCCTGAGCTTCCACCTTACGGTGCAGTTCCCC
AACAAGTTCAAGCACCCCCTGCACCCATGAACACGCCACCACCAGTAACC
AAAGGGCGTTCAAGAGGGCGTGGCAAGGGACGTGCTTCGCAAAGCGCTAA
CGTTGCCcagcaacagcaacaacaacaacagcaagaTATGCAACAGCAAC
AGCAACAACAGCATCAAGCGTTCATGGGGAACCTCCCTCCTTACAGCGGC
TATACTGGTTTCCCTGGCAACCAAATGCCACCAGGCATGCCGGGAATGCA
AGGCTTCCAACCCAATCCCATGATGCAAGGTGGGAACATGATGCCTAATT
TAAACCAAGGACAATTTCCACCGGGTCAATTTCCCCCTGGTGCAGGAGGC
CAATTCCCTCCTATGGGTTGATTACAGTAATAGACAGTGATTTTAAAAGA
CATGTACAAAAGAAAGGTTGAACATTTATTTATAAACATTCTTTTTCTGG
ATTGTCAATTATATTCGCCCGATCGACATTATGAGCTTGAATGAGATATC
GACTCGAAAGATTTACATATACACATCATGGAGAGGAGATTATTTCAACA
TGTCCTCGCTGGATTTTTATCTTAATTTATTACCGAGAAGGCTCTGTTTT
TGGGAAATCGTTCGCggtaaagtttttgaaaatattttccgaTTATTTGA
ATTCGTGATGTAATATTGTCATAACTTGTTATACACACCCCCAAAAAAGA
CTTATATATAATGTAAACATAACTAGTGGCATCACGACATTACGTCGTGA
ATAACATCAATTTGAATCACTTTAAATCTTTTCACTAATTGGGATTTTTT
TCTCGGAATCGATGCAATTAGCACTTGATGCCATTTAATGTTCCATTTGA
TAATAAATTGAGCATATAAAAAGTAATGGTCGTCCTTTCGGAAAAAGTTG
CAAATCATTGCAACGGAGTATTTTACGTTCATTTTTTAAGTATTGAATAT
TAGAGgttaatttttttgagaaatattaaGTTTGTTGTAATAAACACAAG
TAgagataaacattttttaaaccaaacatatcaaattttaaaagtagaaa
atcgtgaaaataaaCGACCTTTGTTGTCTTGTCC
Run BLAST on NCBI

transcript from alignment at sc0000410:232094..237758-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022280 ID=TCONS_00022280|Name=TCONS_00022280|organism=Clytia hemisphaerica|type=transcript|length=5665bp|location=Sequence derived from alignment at sc0000410:232094..237758- (Clytia hemisphaerica)
CCTATCTCAGCTATTTCTGAATTATTTTCTTCTCTTTATAGGTCCCTTGG CATTCCAACCGACGCCTTTCAGTCAATCAGGAAATCCAATCATGTCTACT GTTTCATTCCTGGCCTCTATTGTGGACCCGCGTGTGGCCAGCGCCGCTGC AAAAGCTGCCGTTGGTAAGTGTAATAATCAAAAAGTTTTTATAAGTATTT TTACAATTTAAGACATAACCATGGTAAGTTAATGAATTTCAACGGAATTC TGAGCGCTTGTTGTTCATACCGAATCTTTCTCAAGTAACAAAGTAAGCTA GATTATTTGTATATTTTGTTATTGCTTTAGACCGAAAGTCATGTTCTATA TCAGTGAGNCGAAACGACATCTATCTTACCAAGAAAGCACAAAAGGTAAT AAAAGTAAACATGACTTTCAGACCTTTCCAACTGTACTGTAACTTAATGA ATGAAAGGGAGAGACTTGGCAGTGTATAGTTTGGGTGGGTTGTACAGTCC AATTATGATTCATTTTCAGTGTCCAATATTTTCTGGAATATTATACAAAA AATGCATTACAATTATGATGGTGAAAGCAGACCCTCTCGACATCTCATCT TGCATCCTTGTTTATGATTTTCTTATTTTATCACTTTAGAGTCGGTCTTC AGCTTACAAAGAATGGACAGATCAAGAAACGTTACTTTTGCTAGAGGTAA GTTTTTCTTTTGAAAGCTCTATAGCTCATAGTGGAGGGGTTTTCCGGAAT AGTGAGTATAAGTATGTCTTCGAAAACTGGTTCTTTTCGAAATTCTCGGT CTTGATGAAATGTATATTACTATTGATATAATGGGAAATTCTCAATTTGA TTGTAATGCAAGGGTTTGGAGCTTCACAAGGACGATTGGAATAAAGTGTC CGAACACGTGGGTACGAGAACACAGGACGAATGTATCATGCAATTCCTCA AGTTGCCCATCGAAGATCCATATCTGGAAAAAGATTCCACCGGTTTCCTT GGTAATAAACATTTACAAATATTTATTTATTAGTCTAACGTTCGATACCC TTCTTAAAGTTTGTTGATATTGGCTCTTCCAGATATAAAATATTTTGGAA TTTACCCCCTGGACATTGTGATTTTTGACCCCCCCCCCTGGACAACGGAT CTCACCCACCGGACAGGCATCAGTTGACCCCCCATCAGTTGACCCCCCTC CTAATCATAGTAAGTTTGGTAAATTTTGCAGATTTTTCACTACCCCTGGG ACAAAATATCCTTTATATCCTCCACCCCCTCCCCCATGTACAAAAATTTT CTGCAAGGGCTCTATACTTGAATACTGTGATTTTTTTTTTAAACTGCGTC AACTTAAAGTGGTTCAATGTCAACTAGTTATCTACACTACTTCTACATTG CAATTAAATAATAATGATGAGTTATTATAAATAAATGAATTCTTTTATAA TTATTTTGGAAATTCGAGAAAAGTATGTCCTATCTCAGCCATTTCTGAAT TATTTTCTTCTCCTTATAGGTCCTTTGGCATTCCAACCGACGCCTTTTAG TCAATCAGGCAATCCAATCATGTCTACTGTTTCATTCCTGGCCTCTATTG TGGACCCGCGTGTGGCCAGCGCCGCTGCAAAAGCTGCCGTTGGTAAGTGT AATAATTAAAAAGTTTTTATAAGTATTTTTACAATTTAAGTCATAAGTAA CCGTGGTAAGTTAATGGAGACCCTAGACAGTCTTTTTACCAAATTTTCAA ATGAATTTCAACGGAACTCTGAGCGCTTGTTGTTCATAACGAATCTTTCT CAAGTAACAAAGTAAGCTAGATTATTCGTATATTTTGTTATTGCTTTAGA CCGAAAGTCATGTTCTATATAAGTAATGTTTTGTTTTAGATGAGTTTTCT CGATTAAAAGAAGAGATTCCTGAGGAGCTTATCGACGCACATGTTGAAAA AGCGAAAGCAGAGATGCCCAATGGTGTCAGTGAAGAGAAACCCACTGAAG GTATGCGTCGTTTTGTTTTCAAGGAAACCTTTGCTTGTATACTGTTTTTT TTTCTTCAAAATTTTAAGTATTCCCTCTGATGCCTAATAGATAGAGTTTT GGAGAAAATGATGGGGAAAAAGTAATACATGTAACCCGGGAGAACCCTAG GTCAACTTAAAAGGGGACTAAATACAGAAGAATAAAGGGTAAAGAATGAA AACGAAAGCAATAAACAGGATGGTCTGCCAGAGTGGTGTCCCGGTCGGGC ATTGATCAATTTAGATCACAGATTTGTCGGGTATGTTATATCATCAATTG TACTGGTTTTTACTGGTTTTTACTGGTTTTTATGACTTTATCGGTTAAAA CAGCGTATGGCTCAATATTTACTGACTTTTTTATTCATCATCAACTTGTT CAAACTCTATAGAAGCTGCACCAATGCAAGTTGATGAAGCTGTACCCACT ACAACACCTACTACAAACGCCCCCACTACCGAAACCACACCCTCTACAAC ACCCGCAACTGATCCAGCACAACCACAAGTCAACGGTGAAGTTCATCAAG ACGAGAAACCACAATCAGAGACGCCCACACCCGCCCCTGCACCACCCAAG GAGCCCAGTGAGGAGGAAAAGAAGAAACTTGCAAACCGCGAGAAAGTTCC GGTGGGCAATATCAAGACTGCGGCCGCCGCTGCTATCGCCTCTGCCGCTG TTAAAGCAAAGGTAGTACATGAAATCTAAGTCTTTAAAGAAAAATGTGAA CGTTTTAGAGATTTTGATAGATATACTTTTTAAATATTGCTTGTCCCGAG GATCATACAATTAAAATAGATAAACTTTTTGAAACCTTTTCGAACATTAC CCTTGTTATCAAATTGTAAAGTGTGTTTCAACAACTACATACATGTTGTG TTCTCGTTTAGTATTTGGCGCAAGTGGAAGAACGAAAGATCAAAAGTTTG GTTGCTCTGCTCGTCGAAACTCAAATGAAGAAACTGGAGATCAAATTGCG CCATTTTGAAGAGTTAGAGACTATTATGGACAAAGAACGTGAAATTGTGA GTTTCCTCGGGGCTGTCTAACTACTGTTTCACATTGCATCACTGTACATC TAATTTCATCAATACCTTCCTGGGATTGGATGTGAATTTGAATAGGGTCA TCTCTTTAAATTTCTGGACGGCGTTGTTTGAATTTTTTTTCACTTTTACT TTTCAGCTTGAGCAACAACGTCAATCGTTGATTAAAGAACGGCAGGAATT TTTCGCTGATCAACTCAAAGCTCAAGAAGCACGCGCATCCAAAACGCCTG CCATCGCTGATTTCTTTCCACATGGTCCACAGGCTAAACCGGCTGCTGTT CCAACACCTGAAGAAACACCGGTATAATGTCCTACTTTTTATTGCTTGCT TCCTATTCAAATGAATTTGCAGTATTACCCATGTATAAAGTCGGTCTGCA CCACTAAGCTAACCCGAACAAGTGTTTCGACATACTGCGGCGGGTTAATG CTTTTCTTTAATCAGGTTGCTCTAAAATATAAAACGGCAAATACACGTTT TTTTCGAATTGTTCTATACGAATTGAATGAAATGAAAATGGGCCAAATCT TTAGAATACCCTAAGAATACCCTCTAGGGTGAGTTTGATAAGAATACAGT CATTTTGTATTTGGTTAACAGAAAAAACTGCTTCCTTTGTTAGACTTGAA TTTAAACTTTGAGACAGAAATGTAATTTTAGCTCCAAATGTTCATTCAAA AGTCCAAAACTCTCAAATTGATCATTTCTCATGTTTGTAAAAAAGTCAAG TCTAAAAAAGTAAGAATACGTTAAGCATATTTCACCCTCAATTTTAGCAA TTTCTTAAGAATACTTGACCGTCATCCAAAGTACACTATTCTTATAAAAA TAGCGTGTAGCTGACGTTGAAAAATTCCTTAATGATTACATGATAATAAA TTGATGCATCTTCTCCTCTAAACTTCAGGCTGCACCTCCTTCTACCACGG CCGCCCCAATGATGGGAAACATTCCATCCCAGCAACCTCAACCGACGCCT ATGCAGCCACAACCGACGCCTCCCGCCGGTCTTCTTGCGCAACCACACAG TCAAACGGAAAACAAAATCCCCAATCCTGACTTTCTACAACATCAAATGA CAGCCGCAAGAGCAGGTACCTATCATTTCATTCAAATTTGGAGGCATGAA TAGTGAAGTTGTGGCGTTAGGAAAGAAGCTATATATACACCAAATTCTTC ATGAAAACTATGTGTTGATTTTACCTTCCAGGCTCCTGGTCTAGAAATTA AGTTAATTCTGGTTTTGTACCACAAACAGCTATTAAACCATTTTACTGGC CTGATTTCCCTTGATTGATTTCCCCTTATTTGTTTCTTTAAGGCGGAGCA GCGCTTTCAGTTTTATCTCCACTCGACCCAGCGAAAGGTGATACGCAATC AGATGCTTCAACTACGGGCGTGCAAAGCACATCAGGCGAACTGCTCACAG CAAAAGCTCCCATGCCGTTAAGCAGTGCACAAGAAGACAAAAGTAAACCT CCTGAGCTTCCACCTTACGGTGCAGTTCCCCAACAAGTTCAAGCACCCCC TGCACCCATGAACACGCCACCACCAGTAACCAAAGGGCGTTCAAGAGGGC GTGGCAAGGGACGTGCTTCGCAAAGCGCTAACGTTGCCCAGCAACAGCAA CAACAACAACAGCAAGATATGCAACAGCAACAGCAACAACAGCATCAAGC GTTCATGGGGAACCTCCCTCCTTACAGCGGCTATACTGGTTTCCCTGGCA ACCAAATGCCACCAGGCATGCCGGGAATGCAAGGCTTCCAACCCAATCCC ATGATGCAAGGTGGGAACATGATGCCTAATTTAAACCAAGGACAATTTCC ACCGGGTCAATTTCCCCCTGGTGCAGGAGGCCAATTCCCTCCTATGGGTT GATTACAGTAATAGACAGTGATTTTAAAAGACATGTACAAAAGAAAGGTT GAACATTTATTTATAAACATTCTTTTTCTGGATTGTCAATTATATTCGCC CGATCGACATTATGAGCTTGAATGAGATATCGACTCGAAAGATTTACATA TACACATCATGGAGAGGAGATTATTTCAACATGTCCTCGCTGGATTTTTA TCTTAATTTATTACCGAGAAGGCTCTGTTTTTGGGAAATCGTTCGCGGTA AAGTTTTTGAAAATATTTTCCGATTATTTGAATTCGTGATGTAATATTGT CATAACTTGTTATACACACCCCCAAAAAAGACTTATATATAATGTAAACA TAACTAGTGGCATCACGACATTACGTCGTGAATAACATCAATTTGAATCA CTTTAAATCTTTTCACTAATTGGGATTTTTTTCTCGGAATCGATGCAATT AGCACTTGATGCCATTTAATGTTCCATTTGATAATAAATTGAGCATATAA AAAGTAATGGTCGTCCTTTCGGAAAAAGTTGCAAATCATTGCAACGGAGT ATTTTACGTTCATTTTTTAAGTATTGAATATTAGAGGTTAATTTTTTTGA GAAATATTAAGTTTGTTGTAATAAACACAAGTAGAGATAAACATTTTTTA AACCAAACATATCAAATTTTAAAAGTAGAAAATCGTGAAAATAAACGACC TTTGTTGTCTTGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012495XLOC_012495Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022280-exon-sc0000410-1575043694:237595..237758TCONS_00022280-exon-sc0000410-1575043694:237595..237758Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1575043694:235759..235869TCONS_00022280-exon-sc0000410-1575043694:235759..235869Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1575043694:235048..235346TCONS_00022280-exon-sc0000410-1575043694:235048..235346Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1575043694:234713..234847TCONS_00022280-exon-sc0000410-1575043694:234713..234847Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1575043694:234388..234552TCONS_00022280-exon-sc0000410-1575043694:234388..234552Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1575043694:233594..233780TCONS_00022280-exon-sc0000410-1575043694:233594..233780Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1575043694:232094..233366TCONS_00022280-exon-sc0000410-1575043694:232094..233366Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1510915933:237595..237758TCONS_00022280-exon-sc0000410-1510915933:237595..237758Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1510915933:235759..235869TCONS_00022280-exon-sc0000410-1510915933:235759..235869Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1510915933:235048..235346TCONS_00022280-exon-sc0000410-1510915933:235048..235346Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1510915933:234713..234847TCONS_00022280-exon-sc0000410-1510915933:234713..234847Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1510915933:234388..234552TCONS_00022280-exon-sc0000410-1510915933:234388..234552Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1510915933:233594..233780TCONS_00022280-exon-sc0000410-1510915933:233594..233780Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1510915933:232094..233366TCONS_00022280-exon-sc0000410-1510915933:232094..233366Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1491911889:237595..237758TCONS_00022280-exon-sc0000410-1491911889:237595..237758Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1491911889:235759..235869TCONS_00022280-exon-sc0000410-1491911889:235759..235869Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1491911889:235048..235346TCONS_00022280-exon-sc0000410-1491911889:235048..235346Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1491911889:234713..234847TCONS_00022280-exon-sc0000410-1491911889:234713..234847Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1491911889:234388..234552TCONS_00022280-exon-sc0000410-1491911889:234388..234552Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1491911889:233594..233780TCONS_00022280-exon-sc0000410-1491911889:233594..233780Clytia hemisphaericaexon
TCONS_00022280-exon-sc0000410-1491911889:232094..233366TCONS_00022280-exon-sc0000410-1491911889:232094..233366Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000410supercontigsc0000410:232094..237758 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.0955 22.8864 35.1562 44.4415 41.9328 39.1456 24.1872 26.9472 11.9193 18.423 14.9128 12.9051 12.674 15.3549 9.9802 14.3767 21.5662 17.1656 6.99656 9.35842 9.95616 13.747 16.031 14.7669 21.6596 26.2959 10.6361 10.8249 12.8619 14.0163
Blast
BLAST of TCONS_00022280 vs. Swiss-Prot (Human)
Match: SMRC1 (SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 4.584e-24
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 2
Query:  587 VEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDKEREILEQQRQSLIKERQEFFADQLKAQEARA 790
            VEERKIKSLVALLVETQMKKLEIKLRHFEELETIMD+E+E LEQQRQ L+ ERQ F  +QLK  E RA
Sbjct:  887 VEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRA 954          

HSP 2 Score: 93.5893 bits (231), Expect = 2.108e-19
Identity = 48/65 (73.85%), Postives = 62/65 (95.38%), Query Frame = 2
Query:   38 IGPLAFQPTPFSQSGNPIMSTVSFLASIVDPRVXXXXXXXXVDEFSRLKEEIPEELIDAHVEKAK 232
            +GPLA+QP PFSQSGNP+MSTV+FLAS+VDPRVASAAAKAA++EFSR++EE+P EL++AHV+K +
Sbjct:  678 LGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKKVQ 742          
The following BLAST results are available for this feature:
BLAST of TCONS_00022280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMRC14.584e-2480.88SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN... [more]
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