|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022426 ID=TCONS_00022426|Name=TCONS_00022426|organism=Clytia hemisphaerica|type=transcript|length=3246bpRun BLAST on NCBI protein sequence of TCONS_00022426-protein >TCONS_00022426-protein ID=TCONS_00022426-protein|Name=TCONS_00022426-protein|organism=Clytia hemisphaerica|type=polypeptide|length=875bp FSEEIEIMSKNVLKTEKGAAFFIDLEQIINKETKVEKEKYEKKKHSGGTSRun BLAST on NCBI transcript from alignment at sc0000417:22181..54176- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022426 ID=TCONS_00022426|Name=TCONS_00022426|organism=Clytia hemisphaerica|type=transcript|length=31996bp|location=Sequence derived from alignment at sc0000417:22181..54176- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000417:22181..54176- >TCONS_00022426 ID=TCONS_00022426|Name=TCONS_00022426|organism=Clytia hemisphaerica|type=CDS|length=31536bp|location=Sequence derived from alignment at sc0000417:22181..54176- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022426 vs. Swiss-Prot (Human)
Match: M3K19 (Mitogen-activated protein kinase kinase kinase 19 OS=Homo sapiens GN=MAP3K19 PE=2 SV=1) HSP 1 Score: 276.944 bits (707), Expect = 8.854e-77 Identity = 129/267 (48.31%), Postives = 189/267 (70.79%), Query Frame = 3
Query: 1821 WQKGKVIDRGAFGIVYQGLTNTGQMIAVKEVDINHSKN--AAKNFRKLQDEINILKSLRHPNVIKFIGTSLDDNIVHIFMEYIAGGSLAGLISNFGALNESIYQRYTQQIMSGVHYLHKFGVIHRDIKGANILITVKGNIKLIDFGCAKELS---ISVGSTVLLKSVKGTPYWMSPETVRGTGCNHKSDIWSVGCTVMEMATGKPPWSEYPPYAAMYAVXXXXXXXXXXXXQHSSNARDFVNKCLHRDMNKRPSAEELMTHPFIKKN 2606
W KG+++ +GA+G VY GLT+ GQ+IAVK+V ++ S A K +RKLQ+E+++LK+L+H N++ ++GT L +N V IFME++ GGS++ +I+ FG L E ++ +YT+QI+ GV YLH+ V+HRDIKG N+++ G IKLIDFGCA+ L+ ++ + +LKS+ GTPYWM+PE + +G KSDIWS+GCTV EMATGKPP + AAM+ + P L D S NA DFV CL RD ++RPSA +L+ H F++++
Sbjct: 1061 WTKGEILGKGAYGTVYCGLTSQGQLIAVKQVALDTSNKLAAEKEYRKLQEEVDLLKALKHVNIVAYLGTCLQENTVSIFMEFVPGGSISSIINRFGPLPEMVFCKYTKQILQGVAYLHENCVVHRDIKGNNVMLMPTGIIKLIDFGCARRLAWAGLNGTHSDMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRMAAMFYIGAHRGLMPPLPDHFSENAADFVRMCLTRDQHERPSALQLLKHSFLERS 1327 The following BLAST results are available for this feature:
BLAST of TCONS_00022426 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.