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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022544 ID=TCONS_00022544|Name=TCONS_00022544|organism=Clytia hemisphaerica|type=transcript|length=1501bp
GTTTAATTTTACAAACGATAAAAACCAAATATGTAGTTTCAATGATGTTT
AACAGATCGGCTGATCCTTTGTTACTTTTGCACCTTCTTATTTTAAGATT
GctataaaattctaaaaaagtttaaaaattatatcACATTATATGGTTAA
ACATTTcggattttatttgaaaattgaaaactgCCCACTCGGCCGTGGTG
CCTGGAACGTTTAGCCAAGATTTCGTCTCTGGTGtgtacaatttcagccc
catttgtaattaactttgatttcattcccaCTTGAAATTCAGTTGAAAAA
CTTGAACTCCAAAGCCTTCTCAAGCTTACTAGATCTTTTGGGCCCATTTG
GGATTTCAATTGAAATTCTTATACTGTGGGGAAAAGACAGGGATATAGAA
TGCTGTACCAGATTATGATCCACCAATTTCATATCAAACGTTCTTCAATA
ACAAACGGGTTCTTAACTTCGCGCCATTCAAAGATAGTATATTTGTTCAT
ATCAACCATTTCCTTTAACTCAACATCCACCTGCCCTACAAACTGCTTTT
GTGCCGTTCTAATCCGTTTCCGAACAAACACTTTATACcgaaccatcatt
ctttcaaaattattcaaatCGAATCCTTCGATATCCAAATTACATGCAAA
ACTTGGTTTAACACCagttttatattttgatttcaCTCTTTCTAAGTTAC
GAGCTGCATTATGAAGATCGTGTATTTCTACAGAGACTTGCCAATAAATG
CTAATATTGTTGTTACTAGTCATTTCAAGTTGTCGAACACCAGCACTTAA
GGTTCTTGAAGATTCATCATAAACAATGAGTATCTGTATTGTGACAGGGT
CTGGCAGATTTGCAACATTCGCAATGTGTTCCTTTTGTTTATCCTTGATT
GTCATTATAGAGGTTGAAGAGAAAAAACTTTTAAGCGACATAGAGCGTTG
CTGTAAAGACGGGTGTAGTGTTAATAGCGCATTATTTATTGTGCCATAAT
TTTGATTCTCAGGAGCTGATTGTAACctagaaattttcttcttttcctca
TTCGATTTAGTACCATTTCTTTGTATAAATCTAGCATAGAAGCCACTGCT
TGTATAATGTTCGATTTTTGTTTGACTAGAATCTTCATCATTAACGCTTG
GAGAAAAACAAGGATTAGATTCACATTCAGAATCATTTTCAACTCCACTG
TCAGTATTTGTTGATATAGTAATTCGAATGTCTGTTCCTTTTGTTCTTTT
CtctttcaaatcttcattttcatcttcactaGAGGAAGAATCACTCGAGA
AATCTCCATCATTTGTTTTCTGTTGCGCACAGCAACCATCATGGGGATCA
CAACAACGAGGGAATCTTCCTAATACAATATTAGTGATTCCCAAGATAAC
AATGATACCAAGTAGTAGACATAGGAAGACAACAGCTGACGTTATTCCTA
CTCCAAGCATCTCACTACATTAGAATCATAAATTTTTCTGCAGAatctga
a Run BLAST on NCBI protein sequence of TCONS_00022544-protein >TCONS_00022544-protein ID=TCONS_00022544-protein|Name=TCONS_00022544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
MLGVGITSAVVFLCLLLGIIVILGITNIVLGRFPRCCDPHDGCCAQQKTN
DGDFSSDSSSSEDENEDLKEKRTKGTDIRITISTNTDSGVENDSECESNP
CFSPSVNDEDSSQTKIEHYTSSGFYARFIQRNGTKSNEEKKKISRLQSAP
ENQNYGTINNALLTLHPSLQQRSMSLKSFFSSTSIMTIKDKQKEHIANVA
NLPDPVTIQILIVYDESSRTLSAGVRQLEMTSNNNISIYWQVSVEIHDLH
NAARNLERVKSKYKTGVKPSFACNLDIEGFDLNNFERMMVRYKVFVRKRI
RTAQKQFVGQVDVELKEMVDMNKYTIFEWREVKNPFVIEERLI Run BLAST on NCBI transcript from alignment at sc0000424:107107..108607 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022544 ID=TCONS_00022544|Name=TCONS_00022544|organism=Clytia hemisphaerica|type=transcript|length=1501bp|location=Sequence derived from alignment at sc0000424:107107..108607 (Clytia hemisphaerica)
ttcagatTCTGCAGAAAAATTTATGATTCTAATGTAGTGAGATGCTTGGA
GTAGGAATAACGTCAGCTGTTGTCTTCCTATGTCTACTACTTGGTATCAT
TGTTATCTTGGGAATCACTAATATTGTATTAGGAAGATTCCCTCGTTGTT
GTGATCCCCATGATGGTTGCTGTGCGCAACAGAAAACAAATGATGGAGAT
TTCTCGAGTGATTCTTCCTCtagtgaagatgaaaatgaagatttgaaaga
GAAAAGAACAAAAGGAACAGACATTCGAATTACTATATCAACAAATACTG
ACAGTGGAGTTGAAAATGATTCTGAATGTGAATCTAATCCTTGTTTTTCT
CCAAGCGTTAATGATGAAGATTCTAGTCAAACAAAAATCGAACATTATAC
AAGCAGTGGCTTCTATGCTAGATTTATACAAAGAAATGGTACTAAATCGA
AtgaggaaaagaagaaaatttctagGTTACAATCAGCTCCTGAGAATCAA
AATTATGGCACAATAAATAATGCGCTATTAACACTACACCCGTCTTTACA
GCAACGCTCTATGTCGCTTAAAAGTTTTTTCTCTTCAACCTCTATAATGA
CAATCAAGGATAAACAAAAGGAACACATTGCGAATGTTGCAAATCTGCCA
GACCCTGTCACAATACAGATACTCATTGTTTATGATGAATCTTCAAGAAC
CTTAAGTGCTGGTGTTCGACAACTTGAAATGACTAGTAACAACAATATTA
GCATTTATTGGCAAGTCTCTGTAGAAATACACGATCTTCATAATGCAGCT
CGTAACTTAGAAAGAGtgaaatcaaaatataaaactGGTGTTAAACCAAG
TTTTGCATGTAATTTGGATATCGAAGGATTCGatttgaataattttgaaa
gaatgatggttcgGTATAAAGTGTTTGTTCGGAAACGGATTAGAACGGCA
CAAAAGCAGTTTGTAGGGCAGGTGGATGTTGAGTTAAAGGAAATGGTTGA
TATGAACAAATATACTATCTTTGAATGGCGCGAAGTTAAGAACCCGTTTG
TTATTGAAGAACGTTTGATATGAAATTGGTGGATCATAATCTGGTACAGC
ATTCTATATCCCTGTCTTTTCCCCACAGTATAAGAATTTCAATTGAAATC
CCAAATGGGCCCAAAAGATCTAGTAAGCTTGAGAAGGCTTTGGAGTTCAA
GTTTTTCAACTGAATTTCAAGtgggaatgaaatcaaagttaattacaaat
ggggctgaaattgtacaCACCAGAGACGAAATCTTGGCTAAACGTTCCAG
GCACCACGGCCGAGTGGGcagttttcaattttcaaataaaatccgAAATG
TTTAACCATATAATGTgatataatttttaaacttttttagaattttatag
CAATCTTAAAATAAGAAGGTGCAAAAGTAACAAAGGATCAGCCGATCTGT
TAAACATCATTGAAACTACATATTTGGTTTTTATCGTTTGTAAAATTAAA
C Coding sequence (CDS) from alignment at sc0000424:107107..108607 >TCONS_00022544 ID=TCONS_00022544|Name=TCONS_00022544|organism=Clytia hemisphaerica|type=CDS|length=1032bp|location=Sequence derived from alignment at sc0000424:107107..108607 (Clytia hemisphaerica)
ATGCTTGGAGTAGGAATAACGTCAGCTGTTGTCTTCCTATGTCTACTACT
TGGTATCATTGTTATCTTGGGAATCACTAATATTGTATTAGGAAGATTCC
CTCGTTGTTGTGATCCCCATGATGGTTGCTGTGCGCAACAGAAAACAAAT
GATGGAGATTTCTCGAGTGATTCTTCCTCtagtgaagatgaaaatgaaga
tttgaaagaGAAAAGAACAAAAGGAACAGACATTCGAATTACTATATCAA
CAAATACTGACAGTGGAGTTGAAAATGATTCTGAATGTGAATCTAATCCT
TGTTTTTCTCCAAGCGTTAATGATGAAGATTCTAGTCAAACAAAAATCGA
ACATTATACAAGCAGTGGCTTCTATGCTAGATTTATACAAAGAAATGGTA
CTAAATCGAAtgaggaaaagaagaaaatttctagGTTACAATCAGCTCCT
GAGAATCAAAATTATGGCACAATAAATAATGCGCTATTAACACTACACCC
GTCTTTACAGCAACGCTCTATGTCGCTTAAAAGTTTTTTCTCTTCAACCT
CTATAATGACAATCAAGGATAAACAAAAGGAACACATTGCGAATGTTGCA
AATCTGCCAGACCCTGTCACAATACAGATACTCATTGTTTATGATGAATC
TTCAAGAACCTTAAGTGCTGGTGTTCGACAACTTGAAATGACTAGTAACA
ACAATATTAGCATTTATTGGCAAGTCTCTGTAGAAATACACGATCTTCAT
AATGCAGCTCGTAACTTAGAAAGAGtgaaatcaaaatataaaactGGTGT
TAAACCAAGTTTTGCATGTAATTTGGATATCGAAGGATTCGatttgaata
attttgaaagaatgatggttcgGTATAAAGTGTTTGTTCGGAAACGGATT
AGAACGGCACAAAAGCAGTTTGTAGGGCAGGTGGATGTTGAGTTAAAGGA
AATGGTTGATATGAACAAATATACTATCTTTGAATGGCGCGAAGTTAAGA
ACCCGTTTGTTATTGAAGAACGTTTGATATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022544-exon-sc0000424-1491911889:107107..108607 | TCONS_00022544-exon-sc0000424-1491911889:107107..108607 | Clytia hemisphaerica | exon |
| TCONS_00022544-exon-sc0000424-1510915933:107107..108607 | TCONS_00022544-exon-sc0000424-1510915933:107107..108607 | Clytia hemisphaerica | exon |
| TCONS_00022544-exon-sc0000424-1575043694:107107..108607 | TCONS_00022544-exon-sc0000424-1575043694:107107..108607 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000424 | supercontig | sc0000424:107107..108607 . |
Blast
The following BLAST results are available for this feature:
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