TCONS_00022987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022987
Unique NameTCONS_00022987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length541

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022987 ID=TCONS_00022987|Name=TCONS_00022987|organism=Clytia hemisphaerica|type=transcript|length=541bp
tttagcaAGTTTAAGAACAACAACTGATAGAGTACTATTGCATATTGTTT
GCTGTATACATGGTTTGATCCTACAGGAAAAGCTAACTTGGAACCAGGTA
GCATAGACTGtaaaaaaacatgataaaacctacaattttaatttcaatga
tCATTCTATGTGTAATTATACTCACCATCCAAACAAGCAAAATTGACGGA
CATCTAACAAAATCAGCACTCTGTAATGTAAGGGCATACAGAAAATGCCA
TAAAAAGTCGaagaattttaagaaatttgaaaaatgtcatcATAAGAAAT
TTACACAATGTAAGAAGAAGCttaattttcattatttgcGCCAACCATCA
TTAAAACCTGAAGTGTTATCTTATCCCGCAGTGCATCCGCCGTCGCACCC
GCAACAATTACCATTGGTTGTACCAGAAATATATCATCGTTGACCTTGCT
GTTGTAAATTTAGCATTATAACAATTATTTGCaaatttgacatatttttg
ataatttctttccgatataattaaaaattcatttttctcgC
Run BLAST on NCBI

protein sequence of TCONS_00022987-protein

>TCONS_00022987-protein ID=TCONS_00022987-protein|Name=TCONS_00022987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MIKPTILISMIILCVIILTIQTSKIDGHLTKSALCNVRAYRKCHKKSKNF
KKFEKCHHKKFTQCKKKLNFHYLRQPSLKPEVLSYPAVHPPSHPQQLPLV
VPEIYHR
Run BLAST on NCBI

transcript from alignment at sc0000437:26437..26977

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022987 ID=TCONS_00022987|Name=TCONS_00022987|organism=Clytia hemisphaerica|type=transcript|length=541bp|location=Sequence derived from alignment at sc0000437:26437..26977 (Clytia hemisphaerica)
Gcgagaaaaatgaatttttaattatatcggaaagaaattatcaaaaatat
gtcaaatttGCAAATAATTGTTATAATGCTAAATTTACAACAGCAAGGTC
AACGATGATATATTTCTGGTACAACCAATGGTAATTGTTGCGGGTGCGAC
GGCGGATGCACTGCGGGATAAGATAACACTTCAGGTTTTAATGATGGTTG
GCgcaaataatgaaaattaaGCTTCTTCTTACATTGTGTAAATTTCTTAT
gatgacatttttcaaatttcttaaaattcttCGACTTTTTATGGCATTTT
CTGTATGCCCTTACATTACAGAGTGCTGATTTTGTTAGATGTCCGTCAAT
TTTGCTTGTTTGGATGGTGAGTATAATTACACATAGAATGatcattgaaa
ttaaaattgtaggttttatcatgtttttttaCAGTCTATGCTACCTGGTT
CCAAGTTAGCTTTTCCTGTAGGATCAAACCATGTATACAGCAAACAATAT
GCAATAGTACTCTATCAGTTGTTGTTCTTAAACTtgctaaa

Coding sequence (CDS) from alignment at sc0000437:26437..26977

>TCONS_00022987 ID=TCONS_00022987|Name=TCONS_00022987|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0000437:26437..26977 (Clytia hemisphaerica)
TCAACGATGATATATTTCTGGTACAACCAATGGTAATTGTTGCGGGTGCG
ACGGCGGATGCACTGCGGGATAAGATAACACTTCAGGTTTTAATGATGGT
TGGCgcaaataatgaaaattaaGCTTCTTCTTACATTGTGTAAATTTCTT
ATgatgacatttttcaaatttcttaaaattcttCGACTTTTTATGGCATT
TTCTGTATGCCCTTACATTACAGAGTGCTGATTTTGTTAGATGTCCGTCA
ATTTTGCTTGTTTGGATGGTGAGTATAATTACACATAGAATGatcattga
aattaaaattgtaggttttatcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012914XLOC_012914Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022987-proteinTCONS_00022987-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022987-exon-sc0000437-1491911889:26437..26977TCONS_00022987-exon-sc0000437-1491911889:26437..26977Clytia hemisphaericaexon
TCONS_00022987-exon-sc0000437-1510915933:26437..26977TCONS_00022987-exon-sc0000437-1510915933:26437..26977Clytia hemisphaericaexon
TCONS_00022987-exon-sc0000437-1575043694:26437..26977TCONS_00022987-exon-sc0000437-1575043694:26437..26977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000437supercontigsc0000437:26437..26977 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.104206	0	0.236746	0	0	0.137386	0	0.360198	0	0.433057	0	2.77172	2.50942	0.060679	0.130236	1.04286	1.0689	11.0187	9.74728	3.8228	2.11661	1.10272	1.78228	3.78614	7.88443	0	0	0.118607	0.120842
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top