TCONS_00023076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023076
Unique NameTCONS_00023076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1888

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023076 ID=TCONS_00023076|Name=TCONS_00023076|organism=Clytia hemisphaerica|type=transcript|length=1888bp
aataaaaacattggtTGAGAAGAAGCTATGCCACTTCTAATAGATGGCAA
ACATATTGGATTATCTGAAGATTGTTCCCCTGTCTATTTCTTCAAGTCCA
ATCCAGAACTGGCTAAAAAATCAAGAGATTTTATACATGAAAAATCGTCT
TTAAAGAAAACACTTTGTGAGAATGATCGCTTATTATTTGTCGCTCAAAA
AGAATATGCTGTTCTATCCACTAATCAGAATCAAGCTCGATTTGATTGGT
TGGCTTCTGATGATGCTACGACTTGTCATATAATGATTCTTAAAGAGCCG
AAAACTCTAACTTATGGTTTAATGCATGTCGATGGTTTTGGTGAAACGCG
TCAAGATATTCTTGAAATGATATCTAATATGTTACAATGTTCACGGTTGG
TTTCCGAAAATGATTGTAGCGACCTTGAGATGTATTTATTCGGTGGATTT
GTTGATTCAAAATGTCATTCAGAACCAATCTTCCAAGATGTGCTGAACAT
TTGTAAATCAGTGCTGGTGAATATACATTTGAAGATCGCTTGTTGTTATT
CCATCAATAACGAAACTAAAAAGGAACTTGAATTCCCCATCATAACTGGA
GTCGGTGTTGATCTGAGAAAGCAGCAATTCGAGATTGTCAAATGTTCATT
TCAAGGACCAGATGCGTTGCTAAGGCACGTTCGATTATTGTATGATAGCA
ACAAAGATGGTAGGTGCCGACAAATTTATGATTATACACAAGGGTTGGTT
TACATTGAGCCTTTTGTTTTTCGGACACCGTCTTATGCTTATTATGAATT
GATGCGTTTACCGGACCATGTTTATTTGAAATACACTTCTACTTCTCCTC
ACTGTGAACCGGACCATTTCGTGGAATCATCAAAAAATGCAATCAAGTTC
ACTTTGAAATATCACCAATTGATTGATACCATATTTAGTAATAAAAGGAG
AGAGTGGTACCTGAATGATGAGAATGTGTGGTGTTTAAAAGATAAAGTTC
ATACTATGTTGACTTTGTAGATTGTTCGCTTTTTAACCATATCTGCTTCA
TCAGACACGACTGAAGGTTTTATATGTGGTACGgtgaatgaggaaattta
agcgattttatagcggttttaccgacgaagaggaaaatttcAGGGTTTTT
TGTGAAGGGAGGCCGCCGTACCTcccgtacccgttgcgtcgtgtCTGGCT
TTATGGGTGTCAGGGTCTTGTGTTGGCCCGTGGGGGCGCattgtaccccc
ccccccccATTCAATTACTCCTCAGATTGTTCAATTTCCTTGAAACTTTC
CACATATAAGCACCATCAtattaagaaagaaaaatcgaaaatggtACCCT
AAAAACGATGCCGTCATCAAAAAGGGTAATTTTTaggtaattttttaaaa
aatccgtGAAAAATGATCAATGCTCaatttaaaatgattttaaagtaATT
TATTTCTTGTACTACTCACAAATGAActgcaaaaaattttcttcaatttc
ttttcttcAATAAATTTTCCTCACTTTTTCGTCAAAAAATCCAATGTGAA
TCCaagttgggctgaaattttaggctattttttccaccgggcacaaaatt
ttggccaaattgtGTCCAGTAGGCGGGTAGACAGGGAGTTTGTTAGGGCG
GAAAATACGGGTAATTAAGGGCTGGTATCTTCATTGTGAACTGTATTTTG
TAAATTGTAGTTATAATTTGTATTTCGattgtaaaaatatatttttaata
ttattcaCAGAAAAATGATGATTTGTAGGAAACTAGTATTGGCTTTTTCA
TTTcgtacttttttttcaaaatacaaaatcttCCCCATTTTTTTCAGCAC
ttgtaaatagaaaaaaatcagaTTAAAATGAACTGAAC
Run BLAST on NCBI

protein sequence of TCONS_00023076-protein

>TCONS_00023076-protein ID=TCONS_00023076-protein|Name=TCONS_00023076-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
MPLLIDGKHIGLSEDCSPVYFFKSNPELAKKSRDFIHEKSSLKKTLCEND
RLLFVAQKEYAVLSTNQNQARFDWLASDDATTCHIMILKEPKTLTYGLMH
VDGFGETRQDILEMISNMLQCSRLVSENDCSDLEMYLFGGFVDSKCHSEP
IFQDVLNICKSVLVNIHLKIACCYSINNETKKELEFPIITGVGVDLRKQQ
FEIVKCSFQGPDALLRHVRLLYDSNKDGRCRQIYDYTQGLVYIEPFVFRT
PSYAYYELMRLPDHVYLKYTSTSPHCEPDHFVESSKNAIKFTLKYHQLID
TIFSNKRREWYLNDENVWCLKDKVHTMLTL
Run BLAST on NCBI

transcript from alignment at sc0000439:82490..84377

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023076 ID=TCONS_00023076|Name=TCONS_00023076|organism=Clytia hemisphaerica|type=transcript|length=1888bp|location=Sequence derived from alignment at sc0000439:82490..84377 (Clytia hemisphaerica)
GTTCAGTTCATTTTAAtctgatttttttctatttacaaGTGCTGAAAAAA
ATGGGGaagattttgtattttgaaaaaaaagtacgAAATGAAAAAGCCAA
TACTAGTTTCCTACAAATCATCATTTTTCTGtgaataatattaaaaatat
atttttacaatCGAAATACAAATTATAACTACAATTTACAAAATACAGTT
CACAATGAAGATACCAGCCCTTAATTACCCGTATTTTCCGCCCTAACAAA
CTCCCTGTCTACCCGCCTACTGGACacaatttggccaaaattttgtgccc
ggtggaaaaaatagcctaaaatttcagcccaacttGGATTCACATTGGAT
TTTTTGACGAAAAAGTGAGGAAAATTTATTgaagaaaagaaattgaagaa
aattttttgcagTTCATTTGTGAGTAGTACAAGAAATAAATtactttaaa
atcattttaaattGAGCATTGATCATTTTTCacggattttttaaaaaatt
acctAAAAATTACCCTTTTTGATGACGGCATCGTTTTTAGGGTaccattt
tcgatttttctttcttaataTGATGGTGCTTATATGTGGAAAGTTTCAAG
GAAATTGAACAATCTGAGGAGTAATTGAATgggggggggggggtacaatG
CGCCCCCACGGGCCAACACAAGACCCTGACACCCATAAAGCCAGacacga
cgcaacgggtacgggAGGTACGGCGGCCTCCCTTCACAAAAAACCCTgaa
attttcctcttcgtcggtaaaaccgctataaaatcgcttaaatttcctca
ttcacCGTACCACATATAAAACCTTCAGTCGTGTCTGATGAAGCAGATAT
GGTTAAAAAGCGAACAATCTACAAAGTCAACATAGTATGAACTTTATCTT
TTAAACACCACACATTCTCATCATTCAGGTACCACTCTCTCCTTTTATTA
CTAAATATGGTATCAATCAATTGGTGATATTTCAAAGTGAACTTGATTGC
ATTTTTTGATGATTCCACGAAATGGTCCGGTTCACAGTGAGGAGAAGTAG
AAGTGTATTTCAAATAAACATGGTCCGGTAAACGCATCAATTCATAATAA
GCATAAGACGGTGTCCGAAAAACAAAAGGCTCAATGTAAACCAACCCTTG
TGTATAATCATAAATTTGTCGGCACCTACCATCTTTGTTGCTATCATACA
ATAATCGAACGTGCCTTAGCAACGCATCTGGTCCTTGAAATGAACATTTG
ACAATCTCGAATTGCTGCTTTCTCAGATCAACACCGACTCCAGTTATGAT
GGGGAATTCAAGTTCCTTTTTAGTTTCGTTATTGATGGAATAACAACAAG
CGATCTTCAAATGTATATTCACCAGCACTGATTTACAAATGTTCAGCACA
TCTTGGAAGATTGGTTCTGAATGACATTTTGAATCAACAAATCCACCGAA
TAAATACATCTCAAGGTCGCTACAATCATTTTCGGAAACCAACCGTGAAC
ATTGTAACATATTAGATATCATTTCAAGAATATCTTGACGCGTTTCACCA
AAACCATCGACATGCATTAAACCATAAGTTAGAGTTTTCGGCTCTTTAAG
AATCATTATATGACAAGTCGTAGCATCATCAGAAGCCAACCAATCAAATC
GAGCTTGATTCTGATTAGTGGATAGAACAGCATATTCTTTTTGAGCGACA
AATAATAAGCGATCATTCTCACAAAGTGTTTTCTTTAAAGACGATTTTTC
ATGTATAAAATCTCTTGATTTTTTAGCCAGTTCTGGATTGGACTTGAAGA
AATAGACAGGGGAACAATCTTCAGATAATCCAATATGTTTGCCATCTATT
AGAAGTGGCATAGCTTCTTCTCAaccaatgtttttatt

Coding sequence (CDS) from alignment at sc0000439:82490..84377

>TCONS_00023076 ID=TCONS_00023076|Name=TCONS_00023076|organism=Clytia hemisphaerica|type=CDS|length=993bp|location=Sequence derived from alignment at sc0000439:82490..84377 (Clytia hemisphaerica)
CTACAAAGTCAACATAGTATGAACTTTATCTTTTAAACACCACACATTCT
CATCATTCAGGTACCACTCTCTCCTTTTATTACTAAATATGGTATCAATC
AATTGGTGATATTTCAAAGTGAACTTGATTGCATTTTTTGATGATTCCAC
GAAATGGTCCGGTTCACAGTGAGGAGAAGTAGAAGTGTATTTCAAATAAA
CATGGTCCGGTAAACGCATCAATTCATAATAAGCATAAGACGGTGTCCGA
AAAACAAAAGGCTCAATGTAAACCAACCCTTGTGTATAATCATAAATTTG
TCGGCACCTACCATCTTTGTTGCTATCATACAATAATCGAACGTGCCTTA
GCAACGCATCTGGTCCTTGAAATGAACATTTGACAATCTCGAATTGCTGC
TTTCTCAGATCAACACCGACTCCAGTTATGATGGGGAATTCAAGTTCCTT
TTTAGTTTCGTTATTGATGGAATAACAACAAGCGATCTTCAAATGTATAT
TCACCAGCACTGATTTACAAATGTTCAGCACATCTTGGAAGATTGGTTCT
GAATGACATTTTGAATCAACAAATCCACCGAATAAATACATCTCAAGGTC
GCTACAATCATTTTCGGAAACCAACCGTGAACATTGTAACATATTAGATA
TCATTTCAAGAATATCTTGACGCGTTTCACCAAAACCATCGACATGCATT
AAACCATAAGTTAGAGTTTTCGGCTCTTTAAGAATCATTATATGACAAGT
CGTAGCATCATCAGAAGCCAACCAATCAAATCGAGCTTGATTCTGATTAG
TGGATAGAACAGCATATTCTTTTTGAGCGACAAATAATAAGCGATCATTC
TCACAAAGTGTTTTCTTTAAAGACGATTTTTCATGTATAAAATCTCTTGA
TTTTTTAGCCAGTTCTGGATTGGACTTGAAGAAATAGACAGGGGAACAAT
CTTCAGATAATCCAATATGTTTGCCATCTATTAGAAGTGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012963XLOC_012963Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023076-proteinTCONS_00023076-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023076-exon-sc0000439-1491911889:82490..84377TCONS_00023076-exon-sc0000439-1491911889:82490..84377Clytia hemisphaericaexon
TCONS_00023076-exon-sc0000439-1510915933:82490..84377TCONS_00023076-exon-sc0000439-1510915933:82490..84377Clytia hemisphaericaexon
TCONS_00023076-exon-sc0000439-1575043694:82490..84377TCONS_00023076-exon-sc0000439-1575043694:82490..84377Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000439supercontigsc0000439:82490..84377 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.15529	2.39022	1.02877	0.84264	5.04368	3.58027	2.22764	2.11092	1.24643	1.47773	1.94811	1.0273	1.01182	1.12376	1.51181	1.64815	1.61797	1.56081	0.92094	0.893183	1.94085	1.43496	4.7486	4.03083	2.06448	2.59165	0.811267	0.834884	3.1896	2.7957
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR026750NTAN1
Vocabulary: Molecular Function
TermDefinition
GO:0008418protein-N-terminal asparagine amidohydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008418 protein-N-terminal asparagine amidohydrolase activity
Blast
[Close]
BLAST of TCONS_00023076 vs. Swiss-Prot (Human)
Match: NTAN1 (Protein N-terminal asparagine amidohydrolase OS=Homo sapiens GN=NTAN1 PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 3.729e-31
Identity = 97/321 (30.22%), Postives = 158/321 (49.22%), Query Frame = 1 
Query:   28 MPLLIDGKHIGLSEDCSPVYFFKSNPELAKKSRDFIHEKSSLKKTLCENDRLLFVAQKEYAVLSTNQNQARFDWLASDDATTCHIMILKEPKTLTYGLMHVDGFGETRQDILEMISNMLQCSRLVSENDCSDLEMYLFGGFVDSKCHSEPIFQDVLNICKSVLVNIHLKIACCYSINNETKKELEFPIITGVGVDLRKQQFEIVKCSFQ--GPDALLRHVRLLYDSNKDGRCRQIYDYTQGLVYIEPFVFRTPSYAYYELMRLPDHVYLKYTSTSPHCEPDHFVESSKNAIKFTLKYHQLIDTIFS-NKRREWYLNDENVW 981
            MPLL++G+ + L +        +++P L +++R  +    S+++   +   LL+V Q+E AV  T+        L SDDATTCHI++L+        L H DG  +T+ ++  +I N ++         C  LE++L GGF D +  S+ +   +L+       +IHL   C   +N+  + E  FP+I G+ V+++    EI + SFQ  GP+  LR  R L      G    IYD     + I P+ + TP       +   D   L+  STSP  EP HFVE  ++ + F  K+     T+FS NK   +  N++ +W
Sbjct:    1 MPLLVEGRRVRLPQSAGD--LVRAHPPLEERAR--LLRGQSVQQVGPQG--LLYVQQRELAV--TSPKDGSISILGSDDATTCHIVVLRHTGNGATCLTHCDGT-DTKAEV-PLIMNSIKS--FSDHAQCGRLEVHLVGGFSDDRQLSQKLTHQLLSEFDRQEDDIHLVTLCVTELNDREENENHFPVIYGIAVNIKTA--EIYRASFQDRGPEEQLRAARTL----AGGPMISIYDAETEQLRIGPYSW-TPFPHVDFWLHQDDKQILENLSTSPLAEPPHFVEHIRSTLMFLKKHPSPAHTLFSGNKALLYKKNEDGLW 302
The following BLAST results are available for this feature:
BLAST of TCONS_00023076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NTAN13.729e-3130.22Protein N-terminal asparagine amidohydrolase OS=Ho... [more]
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