TCONS_00023282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023282
Unique NameTCONS_00023282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length787

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023282 ID=TCONS_00023282|Name=TCONS_00023282|organism=Clytia hemisphaerica|type=transcript|length=787bp
TTTGATGACAGGTGTCAAGCCTAGCcctgttttgatgacggagTCATAAC
AGGGAGGTTGCCCTGGCGAACCTTTGAATCCAAGTAACTGACTGCTGACT
TGCCAAGGTTACATAGTAACCCTACACTAGAACTAAACGTATCATGATGC
ATCCCAAATGACCTAATCTCTGATTAACACAGCCTTGCCCAGGAGAAACC
ATGAGATTAGGATCCATCTTGGGAGAACGCAGTTGATAactaaaaagaga
aaaggaaGAAGCAGAACACAGCAACAAAACTACAGGTGGTAAGGAGAGGG
TGGGAGGGAAAGATTGAAGTTCTGATCTATTTAGACTGAGCTGAAAGGGC
CTGGGCAGTTCGTTATGAACGTGTTCCTTATTAAAAACCGTGTAGATAAA
CAAAGTTTAAAAGTTATAAAGTAACTAAGGGAGCAGAATGACTAGAGGTA
CAGAAAAACAAAGCTTTGAAAGTATGTAATAAAGACACTGGATAACAAAA
TTACAGAGAAATGAAATGAATAGTGCTTTTAAGGAGAACACTACAATTTT
GATGAACGTTTACATAttccttttttttccttttgtttacttcaaaaaaa
ttcattcataaCCATTGAATTTGTTGGAAAAAAGAGCCagagtaaacaaa
aaacaaaaatggtagtgCAACTTTTTTCAGGGAACTTAGAGATTTTGAAC
ATGAAAAATTCTGAACAACTGGGTGAATTGCAGAAAAATCATACAATGTC
CCGTCTGCAACAAAAGCACCATTCATTTATGCTTACA
Run BLAST on NCBI

transcript from alignment at sc0000449:185787..186573

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023282 ID=TCONS_00023282|Name=TCONS_00023282|organism=Clytia hemisphaerica|type=transcript|length=787bp|location=Sequence derived from alignment at sc0000449:185787..186573 (Clytia hemisphaerica)
TGTAAGCATAAATGAATGGTGCTTTTGTTGCAGACGGGACATTGTATGAT
TTTTCTGCAATTCACCCAGTTGTTCAGAATTTTTCATGTTCAAAATCTCT
AAGTTCCCTGAAAAAAGTTGcactaccatttttgttttttgtttactctG
GCTCTTTTTTCCAACAAATTCAATGGttatgaatgaatttttttgaagta
aacaaaaggaaaaaaaaggaaTATGTAAACGTTCATCAAAATTGTAGTGT
TCTCCTTAAAAGCACTATTCATTTCATTTCTCTGTAATTTTGTTATCCAG
TGTCTTTATTACATACTTTCAAAGCTTTGTTTTTCTGTACCTCTAGTCAT
TCTGCTCCCTTAGTTACTTTATAACTTTTAAACTTTGTTTATCTACACGG
TTTTTAATAAGGAACACGTTCATAACGAACTGCCCAGGCCCTTTCAGCTC
AGTCTAAATAGATCAGAACTTCAATCTTTCCCTCCCACCCTCTCCTTACC
ACCTGTAGTTTTGTTGCTGTGTTCTGCTTCttccttttctctttttagtT
ATCAACTGCGTTCTCCCAAGATGGATCCTAATCTCATGGTTTCTCCTGGG
CAAGGCTGTGTTAATCAGAGATTAGGTCATTTGGGATGCATCATGATACG
TTTAGTTCTAGTGTAGGGTTACTATGTAACCTTGGCAAGTCAGCAGTCAG
TTACTTGGATTCAAAGGTTCGCCAGGGCAACCTCCCTGTTATGActccgt
catcaaaacaggGCTAGGCTTGACACCTGTCATCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013092XLOC_013092Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023282-exon-sc0000449-1491911889:185787..186573TCONS_00023282-exon-sc0000449-1491911889:185787..186573Clytia hemisphaericaexon
TCONS_00023282-exon-sc0000449-1510915933:185787..186573TCONS_00023282-exon-sc0000449-1510915933:185787..186573Clytia hemisphaericaexon
TCONS_00023282-exon-sc0000449-1575043694:185787..186573TCONS_00023282-exon-sc0000449-1575043694:185787..186573Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000449supercontigsc0000449:185787..186573 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.375121	0.549587	0.569964	0.42162	1.09563	0.733795	0.552397	0.886539	0.431542	0.256274	0.205463	0.490546	0.244932	0.381547	0.0697074	0.236527	0.348965	0.241246	0.456739	0.285567	0.311286	0.260521	0	0.0639832	1.25212	0.764598	0.265558	0.567183	0	0.28876
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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