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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023328 ID=TCONS_00023328|Name=TCONS_00023328|organism=Clytia hemisphaerica|type=transcript|length=1927bp
CACGTATTTTGGAAGCGCGTTCCATGTTGAGATTCTATAAAAGAAGGACT
TGCTTTGTGCACCACGTACTCCATCGTCCGGGAAATTCATCTGAAGCTCG
TGTATATGCTTTCTACATGGTCGCATCCTTTTAATAAACTTTTTTGGTGT
TGTTTTACTATCATAGATGTGGATATGCTTATACACCTGGACCATGTCAC
AGAAAAGTCTTCGAAACTCAAGGGATGGTAGCACCAAGCGTCTTAGTCTT
TCTGCATATGGTAACTGTGAGATTGGTTTTACTAGTTTTGTCGCACGTCT
TTGAACACTCTCGATCAGGTTGATAGATCGACGTAATCTTGGTTGCCATA
CTGATTGAGCATACTCTAAATGTGGTCGTACAAAGGTGGTATAAAGTGTC
TGGAATATGTGAGGACTAGGGTCTTGAAATCCTCTTTTGAGCAATCCCAA
CATAGAATTAGCTTTGTTTACGTTTGCTTAGCGATATGTTCTTCAAATGA
AATTCTGAGTCTATCAAAACACCGAGATCTTTTTCTGTGAAGACATGTTC
AAGTTGCTCTCCATTTAGTTGATACGGGTGTGCATGCTTTATGTTCTCGA
ATTTACCTATTGTTAAAACGTGGCATTTGTCGGGGTGGAATTTCAACAGC
CACTCACGGGACCGTCTTTCAAGTGCTTCAATGTCATGTTGTAAGATTAA
GGAGTCAAGAATGGAATTGATTTCCTTTATAATCTTTGTGTTGTCTGCAA
ACAAGAAAATGCTTGATAGAACATGTTCTGGTAGGTcattaataaaaata
acaaagagcAGAGGACCGAGCACGCTTCCTTGAGGAATGCCACTTATCAC
TGGATCTAAAGATGATTTTGCACCATTAACACTCACTAATTACTTGCTTA
TGTTTGACAATGATGAGATAGAAGTCATCGAAATATTCCAAATTATGAAc
actttcttgttgttttttatttaaaaactaagaaggatgctgatcttcgg
gttatgttttttcttgtaggcttttaaatcaaaatatgaaaaaaaacagT
AGTGGAACACACTCAATGTCTGGaatgaagaagaccaaattagtggtaAA
ACGATGGagggtttgacgtcactcgcgcgacAAGTTACAtacttgttatt
tgttaatcccatctggctataggcggttaggcggcggacattctctaatt
ctccaatcagcgtccggtcattttgaatgaaaacaaccagaaacaaaAGA
GTTataaagggcgcgctatcagtgaaagttattgtgacatgttatgacag
aaagtatgattgataaacttggtggagttatcaaaacaaactaaCAGATA
TCATTCAGTCCCATGTTtggaccaatcgtcccaagttcagtcaggcacat
cctggcaaatgaacggggtgagcatttgcatggggtattcgtcacccagt
gtaaatgagataggacgtctcaggctaaaagcttgaaaatgaataaaaat
gaacttcaaactgaaaaagggaaaaaaggaagaaaactgggaactttatt
ttttgttaaaagtttcttcaatttcgaagacaaaattgacccatggaaaa
aaaatttcatcttggcagtttctttgaaatgaagcaaaatatttccaacc
cggttcaattaaactgggtattcggcgctattatgtcactttcgtttttg
acctcgttcatttgccaatggtcacaagtgaaaaataccccgttcatttg
ccaggatgtgcctgactgaagttagagcagttgacggtgtTTCGTAAGCC
AAATTAAACATTGAACATACCCTAAGTTGGTCTATTATCAACATCCCTTG
TCTAATGCCGACACCCTTCTGCTTCTTTATTAGAGACatgaataatatga
aagtttgaatcactgattgaaaaagga Run BLAST on NCBI protein sequence of TCONS_00023328-protein >TCONS_00023328-protein ID=TCONS_00023328-protein|Name=TCONS_00023328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MLGLLKRGFQDPSPHIFQTLYTTFVRPHLEYAQSVWQPRLRRSINLIESV
QRRATKLVKPISQLPYAERLRRLVLPSLEFRRLFCDMVQVYKHIHIYDSK
TTPKKFIKRMRPCRKHIHELQMNFPDDGVRGAQSKSFFYRISTWNALPKY
V Run BLAST on NCBI transcript from alignment at sc0000450:7589..9515 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023328 ID=TCONS_00023328|Name=TCONS_00023328|organism=Clytia hemisphaerica|type=transcript|length=1927bp|location=Sequence derived from alignment at sc0000450:7589..9515 (Clytia hemisphaerica)
tcctttttcaatcagtgattcaaactttcatattattcatGTCTCTAATA
AAGAAGCAGAAGGGTGTCGGCATTAGACAAGGGATGTTGATAATAGACCA
ACTTAGGGTATGTTCAATGTTTAATTTGGCTTACGAAacaccgtcaactg
ctctaacttcagtcaggcacatcctggcaaatgaacggggtatttttcac
ttgtgaccattggcaaatgaacgaggtcaaaaacgaaagtgacataatag
cgccgaatacccagtttaattgaaccgggttggaaatattttgcttcatt
tcaaagaaactgccaagatgaaattttttttccatgggtcaattttgtct
tcgaaattgaagaaacttttaacaaaaaataaagttcccagttttcttcc
ttttttccctttttcagtttgaagttcatttttattcattttcaagcttt
tagcctgagacgtcctatctcatttacactgggtgacgaataccccatgc
aaatgctcaccccgttcatttgccaggatgtgcctgactgaacttgggac
gattggtccaAACATGGGACTGAATGATATCTGttagtttgttttgataa
ctccaccaagtttatcaatcatactttctgtcataacatgtcacaataac
tttcactgatagcgcgccctttatAACTCTtttgtttctggttgttttca
ttcaaaatgaccggacgctgattggagaattagagaatgtccgccgccta
accgcctatagccagatgggattaacaaataacaagtaTGTAACTTgtcg
cgcgagtgacgtcaaaccctCCATCGTTTtaccactaatttggtcttctt
cattCCAGACATTGAGTGTGTTCCACTActgttttttttcatattttgat
ttaaaagcctacaagaaaaaacataacccgaagatcagcatccttcttag
tttttaaataaaaaacaacaagaaagtgTTCATAATTTGGAATATTTCGA
TGACTTCTATCTCATCATTGTCAAACATAAGCAAGTAATTAGTGAGTGTT
AATGGTGCAAAATCATCTTTAGATCCAGTGATAAGTGGCATTCCTCAAGG
AAGCGTGCTCGGTCCTCTgctctttgttatttttattaatgACCTACCAG
AACATGTTCTATCAAGCATTTTCTTGTTTGCAGACAACACAAAGATTATA
AAGGAAATCAATTCCATTCTTGACTCCTTAATCTTACAACATGACATTGA
AGCACTTGAAAGACGGTCCCGTGAGTGGCTGTTGAAATTCCACCCCGACA
AATGCCACGTTTTAACAATAGGTAAATTCGAGAACATAAAGCATGCACAC
CCGTATCAACTAAATGGAGAGCAACTTGAACATGTCTTCACAGAAAAAGA
TCTCGGTGTTTTGATAGACTCAGAATTTCATTTGAAGAACATATCGCTAA
GCAAACGTAAACAAAGCTAATTCTATGTTGGGATTGCTCAAAAGAGGATT
TCAAGACCCTAGTCCTCACATATTCCAGACACTTTATACCACCTTTGTAC
GACCACATTTAGAGTATGCTCAATCAGTATGGCAACCAAGATTACGTCGA
TCTATCAACCTGATCGAGAGTGTTCAAAGACGTGCGACAAAACTAGTAAA
ACCAATCTCACAGTTACCATATGCAGAAAGACTAAGACGCTTGGTGCTAC
CATCCCTTGAGTTTCGAAGACTTTTCTGTGACATGGTCCAGGTGTATAAG
CATATCCACATCTATGATAGTAAAACAACACCAAAAAAGTTTATTAAAAG
GATGCGACCATGTAGAAAGCATATACACGAGCTTCAGATGAATTTCCCGG
ACGATGGAGTACGTGGTGCACAAAGCAAGTCCTTCTTTTATAGAATCTCA
ACATGGAACGCGCTTCCAAAATACGTG Coding sequence (CDS) from alignment at sc0000450:7589..9515 >TCONS_00023328 ID=TCONS_00023328|Name=TCONS_00023328|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0000450:7589..9515 (Clytia hemisphaerica)
ATGTTGGGATTGCTCAAAAGAGGATTTCAAGACCCTAGTCCTCACATATT
CCAGACACTTTATACCACCTTTGTACGACCACATTTAGAGTATGCTCAAT
CAGTATGGCAACCAAGATTACGTCGATCTATCAACCTGATCGAGAGTGTT
CAAAGACGTGCGACAAAACTAGTAAAACCAATCTCACAGTTACCATATGC
AGAAAGACTAAGACGCTTGGTGCTACCATCCCTTGAGTTTCGAAGACTTT
TCTGTGACATGGTCCAGGTGTATAAGCATATCCACATCTATGATAGTAAA
ACAACACCAAAAAAGTTTATTAAAAGGATGCGACCATGTAGAAAGCATAT
ACACGAGCTTCAGATGAATTTCCCGGACGATGGAGTACGTGGTGCACAAA
GCAAGTCCTTCTTTTATAGAATCTCAACATGGAACGCGCTTCCAAAATAC
GTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023328-exon-sc0000450-1491911889:7589..9515 | TCONS_00023328-exon-sc0000450-1491911889:7589..9515 | Clytia hemisphaerica | exon |
| TCONS_00023328-exon-sc0000450-1510915933:7589..9515 | TCONS_00023328-exon-sc0000450-1510915933:7589..9515 | Clytia hemisphaerica | exon |
| TCONS_00023328-exon-sc0000450-1575043694:7589..9515 | TCONS_00023328-exon-sc0000450-1575043694:7589..9515 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000450 | supercontig | sc0000450:7589..9515 . |
Blast
The following BLAST results are available for this feature:
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