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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023438 ID=TCONS_00023438|Name=TCONS_00023438|organism=Clytia hemisphaerica|type=transcript|length=5014bpRun BLAST on NCBI transcript from alignment at sc0000454:30856..75985+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023438 ID=TCONS_00023438|Name=TCONS_00023438|organism=Clytia hemisphaerica|type=transcript|length=45130bp|location=Sequence derived from alignment at sc0000454:30856..75985+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00023438 vs. Swiss-Prot (Human)
Match: HERC1 (Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2) HSP 1 Score: 663.3 bits (1710), Expect = 0.000e+0 Identity = 379/904 (41.92%), Postives = 535/904 (59.18%), Query Frame = 3
Query: 342 IPNFETTAPEHSVYESHLKYLMVKNEMDYREYNSNFTTAVLMDKRVVISKVVMKTIMNNYHVIRSIKESPKKANKQQKKSDQVEI-EQP-TENQILMEISMKTLTTFFFSLMRMSWSSPDTNMRL-ICEDVLHSCNDLLTTIPALSLANASKLPKVARCCLDDVAVFL--IKLLKSSKETIPNDLKTSVSEILLGLALLRGDIGDLLNWIQVSLDWCLTDETKE-----------IKFKHFFHWYNILKSSNIENEDLPN-------EDAL-DLSSALLRILKTLSMQAQSYT------DSLTGKTTNCIGSEHESFVWGSNSSHQLVEGNKDKILVPKKSASFKDAVQVEAGQYCTFVIFGDGTLHACGKGTYGRLGLGDSNNQEHLKRIN-SCDRPIIQVSSSKGSDGHTLALSKDGKVYSWGDGDYGKLGHGNTMMQKIPKIIQGPFRHKIIKFISAGSRHSAAITETKELYTWGEGEHGRLGHGDSSSQKTPKLVHGIGLVGQVATGSSHTIVLSKDGLTVWTFGAGDNGKLGHGDTNKSYTPKVVEALSGIHIRKVAAGTQCSMVLTSNGLIYVWGCGPCLGTGAADMVNLLPKIVTSLQDKFIIDLSLGDSHCLALTKDHEVYSWGNNSMGQCGLGHTATPIATPTKISHLDGVNIQQLCAGTSHSIVWTTPPIDRKLVALKKAYCVSVKPETFSKLHNYVEVY---LNNKDKLQDFQSADNEKCFADQYLCYTLNLLSSHLMLAVQDETCSREIXXXXXXXXXXXXXXXINESKDNQLIQQCVTDTLKNGAQYLLPKPEERIELLLSLLPKTSDDLQKASSGDMFLLNLLVSSVRDHDVISDIFGF----NLAHTTTMNPVEGKMSDKERKTEA-------LGMVMRLLLRSSALLT 2918
+P+FE + + +L L+ + S+ A + KR+++ + V + N YH +K+ +D + E+P + L+E+ ++T + F+L+R SW P + L +C DV+H+ ++++++P LSLAN SK+P + CL V FL + + S +T+ L SE+LLGLA RG + LL WI+++L T E I F F ++ S + D D L L A L + + + A Y+ DS+ + E +VWGSNSSHQLVEG ++KIL PK + SF DA +EAGQYCTFVI DG++ ACGKG+YGRLGLGDSNNQ LK++ R I +VSSSKGSDGHTLA + +G+V+SWGDGDYGKLGHGN+ QK PK+IQGP + K++ +SAG RHSAA+TE ELYTWGEG+ GRLGHGDS+S+ P LV I VG+V+ GSSHTI LSKDG TVW+FG GDNGKLGHGDTN+ Y PKV+EAL G+ IRKV AG+Q S+ LTS G +Y WGCG CLG G+++ L PK++ L I+D+S+GDSHCLAL+ D+EVY+WGNNSMGQCG G++ PI P K+S LDG+ IQQ+ AGTSHS+ WT P DR++VA + YCV ++ TFS L +++E Y +N++ F S+ F LC L LLS+HL LA+ + + ++ L + + D IQ+ V +TL GA LLP ER+ELL SLLP+ D + S G L+++++S++DH ++ + G+ + A +++ G +SD+ T++ ++M+ LLR+ T
Sbjct: 62 LPDFERESLSSDEQDHYLDALLSSQLALAKMVCSDSPFAGALRKRLLVLQRVFYALSNKYHDKGKVKQQQHSPESSSGSADVHSVSERPRSSTDALIEMGVRTGLSLLFALLRQSWMMPVSGPGLSLCNDVIHTAIEVVSSLPPLSLANESKIPPMGLDCLSQVTTFLKGVTIPNSGADTLGRRL---ASELLLGLAAQRGSLRYLLEWIEMALGASAVVHTMEKGKLLSSQEGMISFDCFMTILMQMRRSLGSSADRSQWREPTRTSDGLCSLYEAALCLFEEVCRMASDYSRTCASPDSIQTGDAPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPSFSDAQTIEAGQYCTFVISTDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERYCDKINSEIPPLPFPSSREHHSFLK--LC--LKLLSNHLALALAGGVATSILGRQAGPLRNLLFRLMDSTVPDE--IQEVVIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDHTHVASLLGYSSPSDAADLSSVCTGYGNLSDQPYGTQSCHPDTHLAEILMKTLLRNLGFYT 956 HSP 2 Score: 308.531 bits (789), Expect = 2.803e-84 Identity = 158/374 (42.25%), Postives = 242/374 (64.71%), Query Frame = 3
Query: 1179 IGSEHESFVWGSNSSHQLVEGNKDKILVPKKSASFKDAVQVEAGQYCTFVIFGDGTLHACGKGTYGRLGLGDSNNQEHLKRINSCDRPII-QVSSSKGSDGHTLALSKDGKVYSWGDGDYGKLGHGNTMMQKIPKIIQGPFRHKIIKFISAGSRHSAAITETKELYTWGEGEHGRLGHGDSSSQKTPKLVHGIG--LVGQVATGSSHTIVLSKDGLTVWTFGAGDNGKLGHGDTNKSYTPKVVEALSGIHIRKVAAGTQCSMVLTSNGLIYVWGCGPCLGTGAADMVNL-LPKIVTSLQDKFIIDLSLGDSHCLALTKDHEVYSWGNNSMGQCGLGHTATPIATPTKISHLDGVNIQQLCAGTSHSIVWTTPPI 2288
+G + + ++WG+ QL E ++ ++VP + SF A QV GQ CTFVI +GT+ ACG+G+YGRLG G+S++ L I++ ++ Q+ +S GSDGH++AL++ G+V+SWGDGDYGKLGHGN+ Q+ P+ I+ ++++ +S G +HSA +T +L+T+G G++GRLG G++S++K P+ V + +GQVA G +HT+ +S DG VW FG GD GKLG G++ +P+ ++ L GI I+KVA GTQ S+ LT +G +Y +G +G N P+ + L I D+++G H LAL + +VY+WG+NS GQ GLGHT + PT ++ L G N++Q+ AG HS WT PP+
Sbjct: 3993 LGGKCDVYLWGAGRHGQLAEAGRN-VMVPAAAPSFSQAQQVICGQNCTFVIQANGTVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQ-MSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLGHT-NHVREPTLVTGLQGKNVRQISAGRCHSAAWTAPPV 4363 The following BLAST results are available for this feature:
BLAST of TCONS_00023438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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