TCONS_00023559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023559
Unique NameTCONS_00023559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2217

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023559 ID=TCONS_00023559|Name=TCONS_00023559|organism=Clytia hemisphaerica|type=transcript|length=2217bp
GGATGACAACGGTCTGTTGCTAAACTTGCTGAAAGGAAGCTGTGATGTTT
TGACTTTCGTACATAGGGTGACTCGTTTGCAAAACCGTTAGTTAGCTAGA
ACTCCTTTATTTCTCACGCATTGCTTTTTCGGCCGAATTTAAGATCCATG
AATGCACTGTCCTCTGAGAGCGATGAAGGGAGAAGAAAAGTTATTGAATC
ATGAtttgagtttctttttaaaaataggaAATTCACTGTTGCGGTCACCC
AGCTCGTTTTATCAATCATCAAATATTTAGGAAACTGTGAATAAGGGAAG
TTGAGCGAATTCGATTTCTCATAATCGCATCAATCATATGTtgtctttta
aaagaattttacaCTTTTGACTGATATCGACTTTGACCGAAAAGGTGACG
TAACCTTTATGACGTCAACTAACGTATTAGTAACACTCATCAGTTAGTGA
CGTCactttggttttattttttttgttcatttagcAGATTATGTTTCCCC
TTCTCTCTCCTATTCATCAATTATTAGTAAAAGCGCGAACATTTCTTGTT
TTCAGAGGGAGGAATATATAAAAAGATCTGAATTAGTATTTGGTCTCTTC
ATTTTTCACATTCCACGTTCAAGTTAAGTCATGGTCACTTCTTacagaag
aaaaagaatacaTCAGATTTCGACGAAGCCTTATTGCGGCTTCTCAGAAT
TTGCATACAAGTTTCCGAAGTTGTGCGATTCCAAGATTAAATCCAACTGT
CCCTTACTCTCCATCTCAACGCCATGCGCGTCCGCTGGCTCCATCAATTG
TCCGCCGACCAAGATCCTCCCTTTCTTATATCTCGGTTGTGAAGAGGATG
CTCTTTCCGAAGACATTTTGAAAACGTGCCATGTCAAATACGTGTTAAAC
GCAAGCCATTCAGCAGTAGACTCGCCGTATTGCACGACGGGACGTTATCT
GAGAATACCCATCAAGGATAATTCCAGTGAAAATATTGTGGCGTGGTTTC
AAACAGCTTTCGACTTCATAGACAAAGTGAAAGAGAGCGACGACCACATC
CTTATCCACTGTGTTGGAGGTGTTTCACGATCAGCTACCATCGCTATCGC
TTACGTCATGAAACATTTCTCCCTTTCACTTGACAATGCGTACAGatacg
tcaaaaataagcgacccaccatttcaccaaatttgaatttcatgGGACAA
CTAGTACAATACGAACAACAATTATTGCAAGAAACAAGTTTGATAAACGC
ACCTCTCTCAGAACTCAATTTAGACTCACCAACAGAATCTTTGCGTAAAG
GACTTGTTTTAAATGATGACGTTACTGATGATATTTCTGGATTTCCTTCT
CCGTTAAGTGACGAATGTTCAGTACCATCACCCGCATTGGATGATAAAAC
AACTGTTTCATGCCTCGATAGTGGTGCATTTACAGACGTAGCCTGTGGTT
ACGCAAatagacttgaaatttttccgTCACCCGGTTCGGATGACGTACCG
TCACCTACGGGAAGTGAATTGAGTAATTGTTCTGAATTTTACGACATGAC
GGCGTCAAATAGTACGAACAACCTACCTACGAGACTTTCTACGGCCACCA
ACGCTCTTCATAAACCCTTATCGTTAGAattgaatttgaagaagaagaaa
gtacCAAGTAGGACAGGATTCACCTTAGAGTTAGATACCAAGAAGAGGTA
ACAGAAACAGAAGAAGAGAGCATTATATCACAACACCGCGCCGCGCCATG
CAGAATTTTTTCCCGCCCTATTaagaattttttgacattttttatatATG
ATATGTGAATAGATTTTTTACCGATAACCTTTAGATAAATAGATAGTTAA
ATCAgtgacgtttttttttaattcttcgaAAAAATTCCTTTCTAATCAGT
TCTAATGTCTTGAAAAATTAGATACGTTTTAGAGCTGTTGCCGGTCAACC
GTTTTGACCATTTGATTTGGGTGCTCACTCTCGCCACAGTCAGGCCTCAT
GAGCAAAATCTCATAACATTCTACGTCATACGCTTGAATAAcgaaaggaa
atttttttaatttatgttttttttttgcttagaaatatttttgatttcat
cttttttttcgttttcgttATGGCTTATTGTACATATTGACACATCAACA
AATCAACAAGAAACTGAacgttttaaacaaaaatattttgacctaAGTTA
CGTTTCTGTTGACTTCT
Run BLAST on NCBI

transcript from alignment at sc0000456:173847..176688+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023559 ID=TCONS_00023559|Name=TCONS_00023559|organism=Clytia hemisphaerica|type=transcript|length=2842bp|location=Sequence derived from alignment at sc0000456:173847..176688+ (Clytia hemisphaerica)
GGATGACAACGGTCTGTTGCTAAACTTGCTGAAAGGAAGCTGTGATGTTT
TGACTTTCGTACATAGGGTGACTCGTTTGCAAAACCGTTAGTTAGCTAGA
ACTCCTTTATTTCTCACGCATTGCTTTTTCGGCCGAATTTAAGATCCATG
AATGCACTGTCCTCTGAGAGCGATGAAGGGAGAAGAAAAGTTATTGAATC
ATGAtttgagtttctttttaaaaataggaAATTCACTGTTGCGGTCACCC
AGCTCGTTTTATCAATCATCAAATATTTAGGAAACTGTGAATAAGGGAAG
TTGAGCGAATTCGATTTCTCATAATCGCATCAATCATATGTtgtctttta
aaagaattttacaCTTTTGACTGATATCGACTTTGACCGAAAAGGTGACG
TAACCTTTATGACGTCAACTAACGTATTAGTAACACTCATCAGTTAGTGA
CGTCactttggttttattttttttgttcatttagcAGATTATGTTTCCCC
TTCTCTCTCCTATTCATCAATTATTAGTAAAAGCGCGAACATTTCTTGTT
TTCAGAGGGAGGAATATATAAAAAGATCTGAATTAGTATTTGGTCTCTTC
ATTTTTCACATTCCACGTTCAAGTTAAGTCATGGTCACTTCTTacagaag
aaaaagaatacaTCAGATTTCGACGAAGCCTTATTGTATGTtcgtttttg
tataattttcactttcagacTTGAATTACATACTTTCAACTACATATCTT
CTAGGCTGTATTAAGTGGTACTACGGCTGCCTTTGGTGACTGTACTCTGT
GTATAATTCAGATTTATAATGTTTTCTTATCTCTATCCTTTCAGGCGGCT
TCTCAGAATTTGCATACAAGTTTCCGAAGTTGTGCGATTCCAAGATTAAA
TCCAACTGTCCCTTACTCTCCATCTCAACGCCATGCGCGTCCGCTGGCTC
CATCAATTGTCCGCCGACCAAGATCCTCCCTTTCTTATATCTCGGTTGTG
AAGAGGATGCTCTTTCCGAAGACATTTTGAAAACGTGCCATGTCAAATAC
GTGTTAAACGCAAGCCATTCAGCAGTAGACTCGCCGTATTGCACGACGGG
ACGTTATCTGAGAATACCCATCAAGGATAATTCCAGTGAAAATATTGTGG
CGTGGTTTCAAACAGCTTTCGACTTCATAGGTAAGAACTACACAGCAAAA
GTTTTACTtcctaatttcaaaaatttagaatgTAGACTACAGTACCAACT
AAAGTCTTCTTATCTTGGGTGTTAGTTTCTGGTCATTCGCTGAGAAgtct
ttaaatatattttttgttctctATAACTGGAGTTCTTCGAACGACGACTT
CTGCCCCTTGGTGTTCGAACAACAGAGTAACTCATATGTACTTCAAACTC
ATATAATCTGAttctcatcttcattttcattttcattttcttccaaCAGA
CAAAGTGAAAGAGAGCGACGACCACATCCTTATCCACTGTGTTGGAGGTG
TTTCACGATCAGCTACCATCGCTATCGCTTACGTCATGAAACATTTCTCC
CTTTCACTTGACAATGCGTACAGGTTAGTTTGTTaatcatttttccaaaa
gtttgTCAACTGATATGATATTGTGTTGCCTGTCCCTCTTCGACGTTTGT
AaattttcaacaacaacaaaatgtttGGGTGATCAAGGCTAGTCCGGAAA
TTTCGTACACATCTTATTACTTCAAAGTTAAATCGCTTGTTTCTAAATTc
ttgaattttcttctttctagatacgtcaaaaataagcgacccaccatttc
accaaatttgaatttcatgGGACAACTAGTACAATACGAACAACAATTAT
TGCAAGAAACAAGTTTGATAAACGCACCTCTCTCAGAACTCAATTTAGAC
TCACCAACAGAATCTTTGCGTAAAGGACTTGTTTTAAATGATGACGTTAC
TGATGATATTTCTGGATTTCCTTCTCCGTTAAGTGACGAATGTTCAGTAC
CATCACCCGCATTGGATGATAAAACAACTGTTTCATGCCTCGATAGTGGT
GCATTTACAGACGTAGCCTGTGGTTACGCAAatagacttgaaatttttcc
gTCACCCGGTTCGGATGACGTACCGTCACCTACGGGAAGTGAATTGAGTA
ATTGTTCTGAATTTTACGACATGACGGCGTCAAATAGTACGAACAACCTA
CCTACGAGACTTTCTACGGCCACCAACGCTCTTCATAAACCCTTATCGTT
AGAattgaatttgaagaagaagaaagtacCAAGTAGGACAGGATTCACCT
TAGAGTTAGATACCAAGAAGAGGTAACAGAAACAGAAGAAGAGAGCATTA
TATCACAACACCGCGCCGCGCCATGCAGAATTTTTTCCCGCCCTATTaag
aattttttgacattttttatatATGATATGTGAATAGATTTTTTACCGAT
AACCTTTAGATAAATAGATAGTTAAATCAgtgacgtttttttttaattct
tcgaAAAAATTCCTTTCTAATCAGTTCTAATGTCTTGAAAAATTAGATAC
GTTTTAGAGCTGTTGCCGGTCAACCGTTTTGACCATTTGATTTGGGTGCT
CACTCTCGCCACAGTCAGGCCTCATGAGCAAAATCTCATAACATTCTACG
TCATACGCTTGAATAAcgaaaggaaatttttttaatttatgttttttttt
tgcttagaaatatttttgatttcatcttttttttcgttttcgttATGGCT
TATTGTACATATTGACACATCAACAAATCAACAAGAAACTGAacgtttta
aacaaaaatattttgacctaAGTTACGTTTCTGTTGACTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013242XLOC_013242Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023559-exon-sc0000456-1491911889:173847..174531TCONS_00023559-exon-sc0000456-1491911889:173847..174531Clytia hemisphaericaexon
TCONS_00023559-exon-sc0000456-1510915933:173847..174531TCONS_00023559-exon-sc0000456-1510915933:173847..174531Clytia hemisphaericaexon
TCONS_00023559-exon-sc0000456-1575043694:173847..174531TCONS_00023559-exon-sc0000456-1575043694:173847..174531Clytia hemisphaericaexon
TCONS_00023559-exon-sc0000456-1491911889:174691..175026TCONS_00023559-exon-sc0000456-1491911889:174691..175026Clytia hemisphaericaexon
TCONS_00023559-exon-sc0000456-1510915933:174691..175026TCONS_00023559-exon-sc0000456-1510915933:174691..175026Clytia hemisphaericaexon
TCONS_00023559-exon-sc0000456-1575043694:174691..175026TCONS_00023559-exon-sc0000456-1575043694:174691..175026Clytia hemisphaericaexon
TCONS_00023559-exon-sc0000456-1491911889:175296..175419TCONS_00023559-exon-sc0000456-1491911889:175296..175419Clytia hemisphaericaexon
TCONS_00023559-exon-sc0000456-1510915933:175296..175419TCONS_00023559-exon-sc0000456-1510915933:175296..175419Clytia hemisphaericaexon
TCONS_00023559-exon-sc0000456-1575043694:175296..175419TCONS_00023559-exon-sc0000456-1575043694:175296..175419Clytia hemisphaericaexon
TCONS_00023559-exon-sc0000456-1491911889:175617..176688TCONS_00023559-exon-sc0000456-1491911889:175617..176688Clytia hemisphaericaexon
TCONS_00023559-exon-sc0000456-1510915933:175617..176688TCONS_00023559-exon-sc0000456-1510915933:175617..176688Clytia hemisphaericaexon
TCONS_00023559-exon-sc0000456-1575043694:175617..176688TCONS_00023559-exon-sc0000456-1575043694:175617..176688Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:173847..176688 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.118023	0.170107	0.198563	0.282659	0.815109	0.471044	0.174468	0.355458	1.52707	13.5849	1.05258	5.91788	43.1857	36.112	27.1036	18.452	7.40776	19.0749	10.5895	11.9935	2.11585	2.3225	0.949707	0.786901	0.275005	0.357654	20.2883	20.7556	66.2892	53.7005
Blast
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BLAST of TCONS_00023559 vs. Swiss-Prot (Human)
Match: DUS16 (Dual specificity protein phosphatase 16 OS=Homo sapiens GN=DUSP16 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.826e-45
Identity = 81/170 (47.65%), Postives = 113/170 (66.47%), Query Frame = 1 
Query:  688 GFSEFAYKFPKLCDSKIKSNCPLLSISTPCASAGSINCPPTKILPFLYLGCEEDALSEDILKTCHVKYVLNASHSAVDSPYCTTGRYLRIPIKDNSSENIVAWFQTAFDFIDKVKESDDHILIHCVGGVSRSATIAIAYVMKHFSLSLDNAYRYVKNKRPTISPNLNFMG 1197
            GF+EF+  FP LC+ K  S      IS PC    +I   PT+ILP LYLGC+ D L++++++   + YVLNAS++     +     +LR+P+ D+  E I+ W   + DFI+K K S+  +L+HC+ G+SRSATIAIAY+MK   +SLD AYR+VK KRPTISPN NF+G
Sbjct:  124 GFAEFSRCFPGLCEGK--STLVPTCISQPCLPVANIG--PTRILPNLYLGCQRDVLNKELMQQNGIGYVLNASNTCPKPDFIPESHFLRVPVNDSFCEKILPWLDKSVDFIEKAKASNGCVLVHCLAGISRSATIAIAYIMKRMDMSLDEAYRFVKEKRPTISPNFNFLG 289
The following BLAST results are available for this feature:
BLAST of TCONS_00023559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS166.826e-4547.65Dual specificity protein phosphatase 16 OS=Homo sa... [more]
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