TCONS_00023725 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023725
Unique NameTCONS_00023725
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023725 ID=TCONS_00023725|Name=TCONS_00023725|organism=Clytia hemisphaerica|type=transcript|length=1485bp
aaacgaatgaagaaagttgtGGTAGCGAGTATACAAAGCAATAGATAGAC
GAGTGAATAAATTACCGAAGTAGCGAGTATATAAAGCAATAGAataacga
atgaataaagtagcgaagtagcgagaTGATAAAGCGATAGATAAACAAGC
GAATAAAGGAACCAAGTTGAAAAagtaatagataaacgagtgaataaagt
agcgaagtggcaagtaGATGAAGAAATAGATAgacgaatgaagaaagttg
cgaagtagcgagttgataaagcaatagataaacgaatgaatgaagtagcg
aagtggcaagtaGATAAAGTAATAGATAgacgaatgaagaaagttgcgaa
gtagcgagttgataaagcaatagataaacgaatgaatgaagtagcgaagt
ggcaagtaGATAAAGTAATAGATAgacgaatgaagaaagtagcgaagtag
cgagttgataaagcaatagataaacgaatgaattaAGTAGCGAAGCGGCA
AGTAgacaaagcaatagataaacgaatgaataaagttgCGAAGTGGCAAG
TAGATGAagtaatagataaacgaattcgaataaagtagcgaagtagcgag
ttgataaagcaatagataaacgaatgaataaagtagcgaagtggcaagta
gataaagcaatagataaacgaatgaaagaagtagcaaaataggtgttttc
ttataattttttaacttcgcATTTTCGAATTAGGAAATCTTTGTGGGtcg
ctaaatctaaaattcacttcgcattttgcgaagtgcgaagctataattcg
aaccctgctACTCTCTCctctttttagaaaaactatttaaaaagttttga
aaacgctGACAGTTGATTGAATTGTAAGGGGCATAAAAAGTTCACAAAAT
TTATAAATGTTGTAGGTCTAATAACAGCGGTAGTAACATGGCGCCAACAA
CAAAGAGAGGGAGAACTTCAAATCAATCACAGCAATCTCATCAAGATGAG
TTGTCAAGGATTGCAAAGAGCTGGTGGAAATTGAAACTTTCAGACCAAAC
AGCACACAATGAAGCCATGAAAATTCAACTCTTATCACCCTTCCTTTACA
GAAAACTTTATCAAAGTGATGTTTGGATTGAGTGGGCCAAATCTGCTAGT
TTGTTATCTGGAAATCGGTTAACGGAACTGATGAATGAACTGTCTAttga
tgaaataaaaaacacaGATCTAATGGAAATGGTTATGATCAACTTCCAAG
ATCAAATAAAACTAGAATTCAACAACAAGTCAATAAAGCACAACACTTTT
GATGGAGTTATACGTAACATGCATGCATTAGAACGGGAAAAATCAGTGCT
TATTgtcatttcaaaattgaaagacCAAAGTTGgtttaaaaatataaaAT
CAGGTATTATGGAAACGTTTATAGGACAAGACAAAACTCAAGACAAATAT
GATGCTGCAATCGTTTTGGTTGCTTGGCAAAGTAT
Run BLAST on NCBI

transcript from alignment at sc0000460:99724..104097-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023725 ID=TCONS_00023725|Name=TCONS_00023725|organism=Clytia hemisphaerica|type=transcript|length=4374bp|location=Sequence derived from alignment at sc0000460:99724..104097- (Clytia hemisphaerica)
AAACGAATGAAGAAAGTTGTGGTAGCGAGTATACAAAGCAATAGATAGAC
GAGTGAATAAATTACCGAAGTAGCGAGTATATAAAGCAATAGAATAACGA
ATGAATAAAGTAGCGAAGTAGCGAGATGATAAAGCGATAGATAAACAAGC
GAATAAAGGAACCAAGTTGAAAAAGTAATAGATAAACGAGTGAATAAAGT
AGCGAAGTGGCAAGTAGATGAAGAAATAGATAGACGAATGAAGAAAGTTG
CGAAGTAGCGAGTTGATAAAGCAATAGATAAACGAATGAATGAAGTAGCG
AAGTGGCAAGTAGATAAAGTAATAGATAGACGAATGAAGAAAGTTGCGAA
GTAGCGAGTTGATAAAGCAATAGATAAACGAATGAATGAAGTAGCGAAGT
GGCAAGTAGATAAAGTAATAGATAGACGAATGAAGAAAGTAGCGAAGTAG
CGAGTTGATAAAGCAATAGATAAACGAATGAATTAAGTAGCGAAGCGGCA
AGTAGACAAAGCAATAGATAAACGAATGAATAAAGTTGCGAAGTGGCAAG
TAGATGAAGTAATAGATAAACGAATTCGAATAAAGTAGCGAAGTAGCGAG
TTGATAAAGCAATAGATAAACGAATGAATAAAGTAGCGAAGTGGCAAGTA
GATAAAGCAATAGATAAACGAATGAAAGAAGTAGCAAAATAGGTGTTTTC
TTATAATTTTTTAACTTCGCATTTTCGAATTAGGAAATCTTTGTGGGTCG
CTAAATCTAAAATTCACTTCGCATTTTGCGAAGTGCGAAGCTATAATTCG
AACCCTGCTACTCTCTCCTCTTTTTAGAAAAACTATTTAAAAAGTTTTGA
AAACGCTGACAGTTGATTGAATTGTAAGGGGCATAAAAAGTTCACAAAAT
TTATAAATGGTAAGTAGCTTTTAGTTTTGATTTTCTTTATATTATTTTGT
GTCAGTGTTTTATCATTCATCACAATTTCATTGTAGTATTTTTTCCTGAG
TATATAACCCTTGCGTTAAAACATTATCTTCAAAGAAAGAACTAGTTTCA
ATATTTTGCTCACATCATGAATTCCTCACAGACTAACTTGTGGTAAAGAT
GAAGATTTTTTTATCATGAAAATTTTCCTCACAGTAAATTAACTTTCCAA
TAGGTTTTGAAATATTTGATCAGTTGTAGGTCTAATAACAGCGGTAGTAA
CATGGCGCCAACAACAAAGAGAGGGAGAACTTCAAATCAATCACAGCAAT
CTCATCAAGATGAGTGTAAGAATTGCTTGGTCAACTTCTGTCTAATTTCT
TTTGATGTCTTGATCATTGTGGTATGTCTTTTTTAACAGACAACTTGCAA
GTTCAATCAAAATACTTTAAAAGGGGTGATCATCAAGATCCATACTTACA
ATGCTGATCCTGCCTCTTTATTTAAGAGAGATTGTTATATTTTCAAGTCA
AAAAATTGTCAGTGACTGAATTGCTGTATTAAACAAATCAAGTTTGAATT
AAAGATAAAGTTATTTGAGAGAGTCGAATATTGTATACTTATTTCAAAAA
AGAGGGTCATTTACTGAATTCTTCCTCAGTATTATTTCCTCAGTATTATG
ATATTTATTTCTGTTTTAGTGTCAAGGATTGCAAAGAGCTGGTGGAAATT
GAAACTTTCAGACCAAACAGCACACAATGAAGCCATGAAAATTCAACTCT
TATCACCCTTCCTTTACAGAAAACTTTATCAAAGTGATGTTGTATGTTTA
AGATATTTTTCTCTTGTGTTGATTTTGCAGGTTTATCTAACTAAAACATT
TCAATTTTAAGTTGCTAGCAATCTTTTTAACTCCTGGTAGAGCTTGTTTT
TTTGGATTTTTAAAACTCTTGTCTTTCTTCTTTCAGTGGATTGAGTGGGC
CAAATCTGCTAGTTTGTTATCTGGAAATCGGTTAACGTAAGAAAGCTTTG
ACTTTTTAAAGTGCTAGTAACACATAGTCTACACAATAGACAGCTCCAGG
CTTTTAGGCCTTACTCTTGGTCTATAGGCACTGCTATAGGCAGCCACTAG
TAACCCCCATCGGGAATTGCTTATTAATAGGTTTAAACATAATAGACAAC
TTTCACAAAAGATGTTTATCAATAGAGATTTCAAATAAAAAAAAGAATGT
TTAAAACACAGCTGATTTGCTTAGGTTTTGAAACTCTCTCTTGTTTCATT
AAAACCTCAGTGCGCATGCGATTTATCTGGAGAATTTCAATATTCAAAAC
AAGAGCAGTGCTCATATCCCGAAGAGTAGGAGTTTTACGCTCGAAACGAA
GGAAGATATGACGTAGTCTAGTAACACAATGTTTACAGTACCCTAATAAA
CCTTTTAAAATGTGTTATGTCTGACCAATAGGTATAGAAAAACTTTGCTT
TGCATTGCCTTTTCGTTTATTTTTGAATTAATAAATTATTGTATTGCATT
TTCTCCTTCTTTGTTTTCTTAAAGGGAACTGATGAATGAACTGTCTATTG
ATGAAATAAAAAACACAGATCTAATGGAAATGGTTATGATCAACTTCCAA
GATCAAATAGTATGTCTTTTGTTATGTGATGAATATTTTAAATGTTTGTT
TTTGTTAAATTAAAGATCAACTAGCCGTATGCGCAGCGTCGCACGCTGCG
TGTCCCATTCCAGTGAATCACTACACATNTTCTTGTGAAAGTGGGAACCA
ATACTAATTATTTCTGATTGCAAAGGCAGACCCTAAAAAACTGGCCAGAG
AAAGATTTCACATTTAAATTCAAAAAACAAAATCGGTAAAATCAGAATTG
AAGCAGTGCACATTTATATAAATCTAGAACTGCAGAAAAATTGTTTTAGA
TTGTTTTAGTGTAGAAAATGTTGAAACAGAAAATTGTAAGCAAAATTGCA
AAATGGTTAAAATGTTTTTTTAAAAAGTTTTTGAAAGTGCAGTGCGGTGA
CGTCAAAATTTTTTTTCACCCAGCCAATGAAAGGGAAACATTCGAATTTT
TAGGGTCGGCCTTAATGTAACTAAAATAGCAACAGATTAAAAAGGTCATT
GCCATCATTGATTTTTGGGACCCAAAATTGTGGAATACAAGGTTCTTCAC
AATTGTCTACCAAATATCCAAAAATGAAGGCAAACAAAATCTCATGCTAA
CAAGTTTGTCCAAAACTGCCTGGTTCTTTGAAATTTTGGCTCTTAAATGT
GTAACAACTTGGAACAACTTTTTTCTTAACTTTTACCATGACATATTAAT
TTACTTTTTAGAAACTAGAATTCAACAACAAGTCAATAAAGCACAACACT
TTTGATGGAGTTATACGTAACATGCATGCATTAGAACGGGAAAAATCAGT
GCTTATTGTCATTTCAAAATTGAAAGACCAAAGTTGGTTTAAAAATATAA
AGTAAGTACTTTTACAGTCTTTCGGTTGGCAATGCTACTTCTTTCAAATT
GAATAGTATTCCCTTCCATAGTGTCAGCACCCTACCCTTAAATCTACTCT
GAAATTTTTGGCAGATATGGGGTGTTTCAAAAAAAGTGTACAAACCTCAT
TTTTGGGAAAAATTATCTAACGCCAAAAAAGGCTCCGAAAATGGAACTTT
TAATTTTATGAATCAGAAAAACATGAAAAGTGTTCTGTTTTTGGCATTCG
ACTAGACTGACTATTGAACACGTGAATCAAATTTAAAGAATGATAACTAA
AAATTTAAGCTAGTCTTTCCTCTTTCTGATGGTAAAAAGTTAAGATTTAT
AATATTTTTTAGTTTTGTCACAATCTTAATTCAAACTTGTACACTTTTTT
TTGAAATAGCATGTACTAAAGTTCTTGGGGCCGATTTTTCGAAAATGTTT
GCTGTTTTTGCACAAGGATGCATTTTAGCAATGTCTGAGAAAACAGCAGG
TACAAAAATGAAAAAAACTGATAATTTGATTCAAAACATGAACAAATTGA
TTTGAATCTTTTGCAAATGAACTTCAAAGTGATAAGTGTGCTTGAAATTA
CTTTTCTTTTTTGAAGGATGTAAACATTATTCCATCTTTACAGTTGACCT
TTAAAATGTCCAAGAAAGAATCTCGGGATAAAACACTGTTATAAACTTTT
ACTGTTTGAAATTTGAAAAGGCCATTCTGGATCAGCATGGAACCTTTTTG
AATTTTATAGAATGCTTACAAATGAGCAAGGCAAAGTTTACTGTTTTAGC
AGTTCTGTTTTACTTTATTCGGTTTTCTTAGAAATCTTAGAAATCTACTA
GAAATTTTACTCAAATTATTAATCCCTTTTTTTGTAGATCAGGTATTATG
GAAACGTTTATAGGACAAGACAAAACTCAAGACAAATATGATGCTGCAAT
CGTTTTGGTTGCTTGGCAAAGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013330XLOC_013330Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023725-exon-sc0000460-1575043694:103189..104097TCONS_00023725-exon-sc0000460-1575043694:103189..104097Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1575043694:102833..102924TCONS_00023725-exon-sc0000460-1575043694:102833..102924Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1575043694:102357..102478TCONS_00023725-exon-sc0000460-1575043694:102357..102478Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1575043694:102162..102211TCONS_00023725-exon-sc0000460-1575043694:102162..102211Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1575043694:101539..101623TCONS_00023725-exon-sc0000460-1575043694:101539..101623Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1575043694:100697..100836TCONS_00023725-exon-sc0000460-1575043694:100697..100836Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1575043694:99724..99810TCONS_00023725-exon-sc0000460-1575043694:99724..99810Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1510915933:103189..104097TCONS_00023725-exon-sc0000460-1510915933:103189..104097Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1510915933:102833..102924TCONS_00023725-exon-sc0000460-1510915933:102833..102924Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1510915933:102357..102478TCONS_00023725-exon-sc0000460-1510915933:102357..102478Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1510915933:102162..102211TCONS_00023725-exon-sc0000460-1510915933:102162..102211Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1510915933:101539..101623TCONS_00023725-exon-sc0000460-1510915933:101539..101623Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1510915933:100697..100836TCONS_00023725-exon-sc0000460-1510915933:100697..100836Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1510915933:99724..99810TCONS_00023725-exon-sc0000460-1510915933:99724..99810Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1491911889:103189..104097TCONS_00023725-exon-sc0000460-1491911889:103189..104097Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1491911889:102833..102924TCONS_00023725-exon-sc0000460-1491911889:102833..102924Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1491911889:102357..102478TCONS_00023725-exon-sc0000460-1491911889:102357..102478Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1491911889:102162..102211TCONS_00023725-exon-sc0000460-1491911889:102162..102211Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1491911889:101539..101623TCONS_00023725-exon-sc0000460-1491911889:101539..101623Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1491911889:100697..100836TCONS_00023725-exon-sc0000460-1491911889:100697..100836Clytia hemisphaericaexon
TCONS_00023725-exon-sc0000460-1491911889:99724..99810TCONS_00023725-exon-sc0000460-1491911889:99724..99810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000460supercontigsc0000460:99724..104097 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.72469	5.36705	4.3429	3.3124	9.49591	7.49487	6.17802	9.40874	4.29523	5.19062	2.7363	4.76579	4.32396	4.11001	3.416	5.26668	4.12205	4.33209	1.35607	4.36481	7.84015	8.30258	3.07645	6.00859	6.10743	8.38578	5.34859	4.17404	2.86246	3.47497
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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