|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023765 ID=TCONS_00023765|Name=TCONS_00023765|organism=Clytia hemisphaerica|type=transcript|length=1059bpRun BLAST on NCBI protein sequence of TCONS_00023765-protein >TCONS_00023765-protein ID=TCONS_00023765-protein|Name=TCONS_00023765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp MDLWNDYKSLLNYVFFSNDDVIQKNTKEQADFWTFLEKYEKFKNRKKSQPRun BLAST on NCBI transcript from alignment at sc0000461:199112..206013- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023765 ID=TCONS_00023765|Name=TCONS_00023765|organism=Clytia hemisphaerica|type=transcript|length=6902bp|location=Sequence derived from alignment at sc0000461:199112..206013- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000461:199112..206013- >TCONS_00023765 ID=TCONS_00023765|Name=TCONS_00023765|organism=Clytia hemisphaerica|type=CDS|length=9600bp|location=Sequence derived from alignment at sc0000461:199112..206013- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00023765 vs. Swiss-Prot (Human)
Match: DHX34 (Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34 PE=1 SV=2) HSP 1 Score: 332.413 bits (851), Expect = 1.117e-103 Identity = 164/323 (50.77%), Postives = 224/323 (69.35%), Query Frame = 3
Query: 108 WN--DYKSLLNYVFFSNDDVIQKNTKEQADFWTFLEKYEKFKNRKKSQPEPSKLSPEKNEF----DFPSVYNKRYKINFAINTTELKHRYKEYVSRRYDRSKDCKLSTDDLMEFKQILLYYLDFLQKQKFNKLTKLKEDQRNLPIKQYEDEIVYAVKTNQVVLVAGDTGCGKSTQVPQYLLRGGFAKIACTQPRRIACISLAKRVSYETLNEYRSDIAYQVRFETSKSKATRILFLTEGLLLRQFQSDPDLSMYDVIVVDEVHERHINGDFLLGVLKCLLEKRKDLKLVLMSATINIDLFTNYFRSAPVIQVPGRLFPIELQY 1058
WN + + LL FF +D I++ ++E FWTF E+ ++F+N K S+ E K+ D P Y+ RY+IN ++ + R + L + + EF++ LL+YLDF QKQ F +L KL+ ++ LPI QY + I+ +K +QVV+VAGDTGCGKSTQVPQYLL GF+ +ACTQPRRIACISLAKRV +E+L++Y S + YQ+RFE+++S AT+I+FLT GLLLRQ Q +P L Y+V++VDEVHERH++ DFLLGVL+ LL R DLK++LMSATINI LF++YF +APV+QVPGRLFPI + Y
Sbjct: 30 WNCPETRRLLEDAFFREEDYIRQGSEECQKFWTFFERLQRFQNLKTSRKEEKDPGQPKHSIPALADLPRTYDPRYRINLSVLGP----------ATRGSQGLGRHLPAERVAEFRRALLHYLDFGQKQAFGRLAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSYFSNAPVVQVPGRLFPITVVY 342 The following BLAST results are available for this feature:
BLAST of TCONS_00023765 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.