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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024432 ID=TCONS_00024432|Name=TCONS_00024432|organism=Clytia hemisphaerica|type=transcript|length=574bp
TAAGGTGCATGCAGAGATCGTGGCTGGCCAGGAATTCCAAACTTTTGCCA
AAACGAACTCAAGAAGTATTTCGCCTGCCAGTTTCCATCTGCAAGAAGAT
ATTGCAAGAAATCCTGCAATCTCTGTCCAGGTTGTACTGACAAACCTGGC
TTTAACCCACGTGTTTGCCGATTTTACAAAAGCAATCATTTGTGTGGTAG
AGGTTTCGCTCAAACAAACTGCCCAAAGACATGTGGAAAATGTTAAATCG
ATTCATCTGATTCTTCCTACCTGAAATCGTATTGGTCATTTGGAATTTCA
CGCatcattaaattgaaattttttttggttttactaatttaatgcaaaat
ttttgtaatttcaaTATAGCAGCGAAGAGAACATAAAATTTTTCGATTCA
GAatatatttatttaaaattgtaaattgaaattttgtgtAATCATGAAAC
AGGAATTGGTCGACATACGTTATAAGaaaatttcttacattttgcTGCAa
atttacacccccttctcccATACCCAGTGGAAAACTCGATGGGATTAATA
TTCCAGTGTTTTTTATGGCTGTGG Run BLAST on NCBI transcript from alignment at sc0000492:108871..113528- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024432 ID=TCONS_00024432|Name=TCONS_00024432|organism=Clytia hemisphaerica|type=transcript|length=4658bp|location=Sequence derived from alignment at sc0000492:108871..113528- (Clytia hemisphaerica)
TAAGGTGCATGCAGAGATCGTGGCTGGCCAGGAATTCCAAACTTTTGCCA
AAACGAACTCAAGAAGTATTTCGCCTGCCAGTTTCCATCTGCAAGAAGAT
ATTGCAAGAAATCCTGCAATCTCTGTCCAGGTATATCATTGAAAATGGAT
TTATGTTCTTTAGTATTTTCGATAATAGGGAATTAAAAAATGCTGGGATT
TTTGGAAGCTAGGAAACTAATAAGCAGTTATTGGACAAAGTCGAATCCAA
TATGCAAAAATATTGAGCGTGCGAGAAAAGATATTGGACAAGGCTTCTTT
CTTGGTAGTTTTTTATTCAAAAGTCTTATTTTTATTTTGTGACGTAACGT
CAAAAAGAAGATGCTCAATTGTCATTGAACTCGTTGTGTGACGTCAATTT
TTGAGATATGTAGCCCCCATGGAAGCTATATAATTCGAAAATATTGGACA
GCAAAGAAGCCAATAAAACGTCGCTATTTACGCGCGTCGGATAATAATAC
GTTTTATTTGTATCTGTCTTTACTATATAAGACATACGATCGAGCATTCC
AAAAGGTCTGTGATAATATAATTCCGTATTCGTATATAGGTTGTACTGAC
AAACCTGGCTTTAACCCACGTGTTTGCCGATTTTACAAAAGCAATCATTT
GTGTGGTAGAGGTTTCGCTCAAACAAACTGCCCAAAGACATGTGGAAAAT
GTTGTAAGTTGTTTCTTGTGCTTTTGATTGGCAGGGACCAGTACCAAATC
TTTCATGGAATAGGTTCCGGAGACGAGGCTTGACGAGTTATGCACGAGCC
AAAACCCCTTTCCGTATTTTTAACCAAATTATCAAATTTATTTCGAACTT
TTTAAGAACTTGGAGCCCTTTCAAAGAATAAATTGCTTTTTTAGTGTTTT
GAAGCTATTTGAGTAACTTTCAAGGGAATCAACAAAGGCTTGCACATACC
CGATACCTATTATGTCTACTTGCAAACCCCATTCAGTTGGTCACAATAGC
GTCCCGCTGAAATGCGTATCAAAGATTAATGCTGCGAAAGCGCTATATTG
TTTATTTGAATCGCCGCAAAACTTCTAAAGGGATTTATGGCGCTTTTTAA
TAAAATCATTATTTTCAAATACTATGAGAAATTGCCTAAAATTTGAGCCG
TAGATGTTAAAAATCAAAGTGCTGTCTTGGGAGTTGAATGAAAAAATTTA
GTTGGTTGGTAGATATTCTGGCTGCTGCAGGTTCGCAATTGGTCATTTTT
TCTCCTTTTAAATTTTCAAGTTTTAATCAATTGTCTTGGGAATTTGAACT
TGATTCAGGTAACTCTCATCCTTGTTGTTGCAAATACATCCTATAGATGA
CTGATGTTGTTTCTTCTGAAAGGTTGATTTCCTAGTGTGACTATCTGCCT
TTGATTATTTTTGTAAAGCTTCTATAGCCCTTTAATGGTCCACTCAGTCT
ATGACAGCTTCTCATCATGTTTAAAAAAAAATCGTCCTTAGTCTGTTCAT
CACCCAGCTCTGAAACAATCTGCAAAGCTCGCACATTTGAAGATCGAAAC
GCAGTAGAAAGAGACCTATCTAAAGTCTATTCACGATAAGTGTGCACTCT
TTTTTCTTTTACCTATAACTTTTGAAGGAATTCTTCAATCTTTATAAATT
TGGTATCATTGGAAAGATATTAGTTAGTGGAACAATTTGAAATAAAAAAT
CTTCAAAAGAATTCTAAAAATGAAGATGAAAATGAAGAAGAAAAAAATGA
AGATCTTGTAGAAAAGTGCTATAACTTTCATTTTCACTGGAGAGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAAAAAATTTCACTAAAATATTTATTCAATATAAAGTTAT
AATACAAAGTTAATAAGTGATTGACCCCAAAAAACAGCAGAAAACAGCAG
AAAACAGCGTTTTTAAACGTCAATTAGCTTATAACTTTTTTTGATATCTT
TTGACTGAATGATTATTTTTTGGGTTGGTGTAATTTAAGATGCAAGATCT
AACGATTTACGATTCACGATGCGCGATCCATGCATAAAGTATGCTGATTA
TTCCTAATAATTATCATATAACTTAAATTATATAACATAATTCTAAAACA
ATGGCATAATCTTTTCTCGCTTTTGTTTACCACGGTAAGTTCATGCGACA
AAAAAGAAATGGAACTACGAATAATTACGACCGTAAAATTATGAAAAAAA
CTAACTTGCATAATGTTGATAATGGAAGCTAACTTGTGAACATCTTACAA
TAGACAGAGAGTGAAACTAAACAATACACAAGAAATATTTTTGCTCTCCT
CAGTTTTAACAATCATAATCGAATATAGGAATTTTCTTTCGGTAAACAAT
TCCCCTATATTGATTCAAGTTATGAAAAAGAGAGAGAGTACAGAAGGTGA
ATGTACGTGGTTTTCACTTTCTTTTTATCTATGACTGATTTAAATATAAT
TTGTATAATAATCCGTGTAGCGAAAGTATAATTCAATTTTCTTTTTAAAA
ATGAAATGAAAATTGAAAAAAATTCAATTTCCTTTCTTTGATATGTGAAA
GAAAATTGAAAAATAGGTCAAATTTCTATTTTCTATTTGAAATAGGAAAT
TGAACTAAAATGATATATTTTAGGAAATTTTTGGACGAGTTAGGGCGCTC
TGGGCGCTCCTCACCTTTGGTAGTCCAGCTCTTTTGCATGGGAGCCACCA
CGTTACCCAAATCCTCACACTGCCAGGTCATTGCATCATCCGGTCCGTAA
TTCTTATCCGTGTTTCGAATCGAAAGTTTTCCTTTTTAAAATGGAATTTT
AAATTTGAAATCTTTTTTTCTTTTTTCTTTTCCAGAAGCAAAATTGAAAT
ATGAACCAATTTTCTTTTTCCTATACTAAATAGAAAAGTAAATTTGAATC
GCGATTTCGTGGGTTTACCCGGGCGTTTTTTCTCCTCAGGGGCCTCCAAC
CTTGTCCATTGTCTGTTTCTCCTGCTCTTTTTAAACTCCTGCAGATGCCA
ACACATTACACCTAAAGACAAACGAGAAAGACACTGTTGCTGCGATGTCA
TTCGTGATAAGAAAGAGCAGAACAAACAAACAGACAGACAATGAACAAGA
GAGGAGGCCCCTGTGGAGAAAAAAAAACGCCCGGGTACACCCACAAAATA
GCGATTCAACTTTATTTTTCTATTTAGTATAGGAAAAAGAAAATTGGTTC
ATATTTCAATTTTGCTCCTGGAAAAGAAAAAAGAAAAAAGAATTTCAAAT
TTAGAATTCCATTTTAAAAAGAAATTGCGGACCGGACGATGAAATGACCT
GGCGGTGTGAGGATTTGGGTAACGTGGTGGCTCCCATGCAAAAGAGCTGG
ACTACCAAAGGTGAGGAGCGCCCAGAGCGCCCTAACTCGTCCAAAAATTT
CATTAAATATATTATTTTAGTTCAATTTCCTATTTCGAATAGAAAATAGA
AATTTGACCTATTTTTCAATTATCTTTCACATATCAAAAAAGGGAAATTA
AATCTTTTTCAATTTTCATTTCATTTTTAAAAAGAAAATTCAATTATACT
TTCGCTACACGGATTTATAATCTTACATAAATGATGTTTTCAAAAATAAT
TGAGTTTCAGCGAATGAAAGTTTGTAAATTGCCTAAATATTTAATCATAA
TTTGCATAATTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTGCATCGTAAATCGTTAGATCGTGCATC
TTAAATTACACCAACCCTTATTTTTTCACAGTGATGACGTTCGATAATCA
AGGTTTCACTTCAGAGAAAAATGATAGTTAAAGCACTTTTCTACAAGATC
TTCATTTTTTTCTTCTTCATTTTCATCTTCATTCTTAGAATTATTTTAAA
GATTTTTTTATTTCAAATTGTTCCACTAACTAATATATTTTCAATGATAC
CAAATTTATAAAGATTGAAGAATTCCTTCAAAAGTTATAGGTAAATGAAA
AAAGAGTGCACACTTATCGTGAATATATTTTTTATTAAATGCGAATTTGA
TATATTTTCATCGATACTTACTTTTCAGAAATCGATTCATCTGATTCTTC
CTACCTGAAATCGTATTGGTCATTTGGAATTTCACGCATCATTAAATTGA
AATTTTTTTTGGTTTTACTAATTTAATGCAAAATTTTTGTAATTTCAATA
TAGCAGCGAAGAGAACATAAAATTTTTCGATTCAGAATATATTTATTTAA
AATTGTAAATTGAAATTTTGTGTAATCATGAAACAGGAATTGGTCGACAT
ACGTTATAAGAAAATTTCTTACATTTTGCTGCAAATTTACACCCCCTTCT
CCCATACCCAGTGGAAAACTCGATGGGATTAATATTCCAGTGTTTTTTAT
GGCTGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024432-exon-sc0000492-1575043694:113399..113528 | TCONS_00024432-exon-sc0000492-1575043694:113399..113528 | Clytia hemisphaerica | exon |
| TCONS_00024432-exon-sc0000492-1575043694:112826..112939 | TCONS_00024432-exon-sc0000492-1575043694:112826..112939 | Clytia hemisphaerica | exon |
| TCONS_00024432-exon-sc0000492-1575043694:108871..109200 | TCONS_00024432-exon-sc0000492-1575043694:108871..109200 | Clytia hemisphaerica | exon |
| TCONS_00024432-exon-sc0000492-1510915933:113399..113528 | TCONS_00024432-exon-sc0000492-1510915933:113399..113528 | Clytia hemisphaerica | exon |
| TCONS_00024432-exon-sc0000492-1510915933:112826..112939 | TCONS_00024432-exon-sc0000492-1510915933:112826..112939 | Clytia hemisphaerica | exon |
| TCONS_00024432-exon-sc0000492-1510915933:108871..109200 | TCONS_00024432-exon-sc0000492-1510915933:108871..109200 | Clytia hemisphaerica | exon |
| TCONS_00024432-exon-sc0000492-1491911889:113399..113528 | TCONS_00024432-exon-sc0000492-1491911889:113399..113528 | Clytia hemisphaerica | exon |
| TCONS_00024432-exon-sc0000492-1491911889:112826..112939 | TCONS_00024432-exon-sc0000492-1491911889:112826..112939 | Clytia hemisphaerica | exon |
| TCONS_00024432-exon-sc0000492-1491911889:108871..109200 | TCONS_00024432-exon-sc0000492-1491911889:108871..109200 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000492 | supercontig | sc0000492:108871..113528 - |
Blast
The following BLAST results are available for this feature:
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