TCONS_00024439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024439
Unique NameTCONS_00024439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length817

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024439 ID=TCONS_00024439|Name=TCONS_00024439|organism=Clytia hemisphaerica|type=transcript|length=817bp
TGTTCAAAATGAGCAAAAGGAGAGCAGCCTTGAAGAAAGATCAGTGGTAT
ATCGGATGGAGCAATTGCTTACCGCGAATTCAAACCATTTTGCGGAGACA
CTACCAACGTCCAACTTTCTTGCCTGTGGATTCTGAATCAAGTTCACTAG
ACTGGATATTCATGGGTGGAAGTGGAAGAGGGGCTATGATGCATATCGAT
GCAGTGAATCGTCCATCCTGGCAAGCAATGATCAAAGGCAAGAAAACATG
GACCATCCAACCACCTCCAGAATGTCTCCTTCATTCATCGAAAAGACTTC
AAGTGACCATGGAACCTGGTGACATCCTTGTTGTAGACACGAACAAATGG
TACCATTCAACTTACATCCACCCTGAAGGAGGCCTCGCCATCACCATCGG
CTCCGAATATGATTGAAGTTGCTGTTTTTCATACATAACTGGCCGGGAAC
TCGCCTTAGTAAATGTTTCATAGATTACTTGGCAATTCTTGacatgcgta
agtcaagatgattacgtcatttttcacaTCGGAAACTCCCGAAAATCACT
CATACGTCAAATTCCAgtgttttcgggtgtttccgatagggaaATGGCAT
AATCTTGACTTACACACATCAAGAATAAATGTCACACAAGTGTTTGTTGC
GGTTGTTCGACTTTTACTGTGCAGGAAAATCTAACCAATCGAATGTATTT
ATGAAAACAATAAGAAGactttgtaatatattttcacTGTAGTATTTATG
AAATcgttaagaaatttttttttttgacatatGTTCTTGAAGCtcttgaa
attgaatttttttcttc
Run BLAST on NCBI

transcript from alignment at sc0000492:216342..219658-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024439 ID=TCONS_00024439|Name=TCONS_00024439|organism=Clytia hemisphaerica|type=transcript|length=3317bp|location=Sequence derived from alignment at sc0000492:216342..219658- (Clytia hemisphaerica)
TGTTCAAAATGAGCAAAAGGAGAGCAGCCTTGAAGAAAGATCAGTGGTAT
ATCGGATGGTAATACATTCAGTTCTCTTTTCTGGCTTTTTGGACCTCCCT
TAAGGTAGTCCTTTAAATTAACCCCTGTCCCTTTCGTTCGTCCGTTCGTC
CGTTCGTCTGTTGCCAGCTTTTCTCGGGATCGGCTCATTAGTTTTTTCTA
ATTTTTTGCACAATGATGCAAAATGGCGATGCCCAAAATGTGACGAAGCC
CGATTTTCGAAAAAAAAAATTTTTCCGGCCGAAAATGGCGGAAATATGCC
GGAAAGACTGGTTTTTCGGCATTTTCTCGAGATTTCCTGTAGTTTTTTCA
GATTTTTTGCTCAAAGATGTGTATAAACAATGCCCAAAACATGGCCGAGT
CCGATTTTTGAGAAAAAAAATTTTTCGGCCGAAAATGCCGGAAATCGCCG
TTTTTCTGGATTTTCATTGGACTTTTTCCATATAATTGGTTGTTTTTTCA
TTCAAAAACATTATTAATAGCAATGCCCACCATCAAGCATGTTTCAATTT
TCAATAAAATTGATTTTTGAAGCCGGAACTTTCCAAAAATCGCCGGAACA
GCCGATTTTCGCCGGAAAACGGTATTTCTTGAATTTCTTGAGTTGTACTG
TATTTTTTTTAATGAAAATTTGCACACTGATGCAATATGACAATACTTAA
AATGTGACTCAGCCCGATTTTCGAAAAAAAATCATTTCCGGCCGAAGATG
CCGGAAATATGCCGGAAAAACTTTTTTTTTTTACTTTTTCTCGAATTTTC
ATTTTCAGTTTTCTCTGATTTTTTGCAGAAAGATGCGTATTCGCAATGCT
CAAAAAATGGCAGAGTTCGATTTTTGAGAAAAAATCTTTTTCCGGTTGAC
AATGCCGGAAATCGCCGTTTTTGCAGATTTTCATTGGATTTTCTCCTTAT
ATTTCTATGTTTTTCACACAAAAACATTATTGATAACAATGCTCACCATC
AAGCATGATTCAATTGTCAATAAAACTGATTTTTGCGACCAGAACCTCCT
ATTTATTTTTTCCCTACAACCCTTCCCTCTCCCCCCCATCAACAATCAAT
GATGAATTGATTGTGTTGTGCATTTTCGCTAAACGCTATATTTTCTGACT
GATTTTTTTCTTTTTTCTTTTCGCATTGCTATCTAACTTTCGTCATCAGG
TAGGTCCATTCAGCATGTTGCTTGTTATTCTTATTCTGTCCCTTATCTCC
CTCCATAGAGTACCTATATTTTCAGGTTTTTACAACCTATAATTCAAAGA
GAAAGGTCATTTGTTTGGTCGTTTTCTGTCGGCTAATGCGATCTAAATAT
TATGGTAATTTTAAGACATGCTATAACTTACCCGAACTTTAGTCCCCTCG
GTAGAGTGCCTTTGTCATTTTGCAAAACCAGTCAATCGAATTAAAAGATT
GTCAGACATTTAACGTCCACGACGTTTGAAGAACAATGTTTAACGGTTTG
CTCCCAGCTTAACAAGCTTAACTTAATGAATCCAAACACTTCCCCAAATT
GTATTTCCACATATCCCACGACGTTTAAAGTTGTTTGGAAAATTCTCGAT
TTGACCAGCCCTCGTGACTGATTTCAATTCTTCTTTTTATCCCCTGTAAA
CATTGATCCGGGCCGAAGAGAGAAATAACGCTAAAGAATTGAAAGTATAT
AAAGGACACCCAATTTGTTTACTTTTCCAGGAGCAATTGCTTACCGCGAA
TTCAAACCATTTTGCGGAGACACTACCAACGTCCAACTTTCTTGCCTGTG
GATTCTGAATCAAGTTCACTAGACTGGATATTCATGGGTGGAAGTGGAAG
AGGGGCTATGATGCATGTAAGTCAGGAAGTATAATAGTTTCTTTAAGAAA
AGAAAATCGTAGAGAGGGACTTGAAAGAGAGGTGAAAGAATTTGATACAG
GGGCGTGTTAGTACCTGAAAGAAAGTGTTGATGACAATCTACCCTTACTT
TCTCCATCCACATTAGTTTCCAGCCCTTGATGACGGCTTGTTAATTAACA
GCAAGTAGAAATCTACCCTCTCTGGAAAATACGACCAACCAAACGGGATT
GCTAGTTTCCCTTTGCTGTGGTATCTATAATCCATGTAGAATGAATGAAT
AGATGTCATAGGTGTAACACATTAGGAACTAAAGTTCCTTAAATATTGTT
TCCCTTTTCAGATCGATGCAGTGAATCGTCCATCCTGGCAAGCAATGATC
AAAGGCAAGAAAACATGGACCATCCAACCACCTCCAGAATGTCTCCTTCA
TTCATCGAAAAGACTTCAAGTGACCATGGAACCTGGTGACATCCGTGAGT
ACTAAACTTCACTGTTTTCAGGATGCTCAGATACTTCTTTATATTCACAT
AAACATTTCTTTCATTCCTTAAAAATCTATCGATAGATTTTTACACTCTG
ATAATAACCTCTTGTAGTGAAGGTCGAATTGACTTCTTTTCACCATTAAA
TTATTGGCCTACGGAAATATCGTTCGATACCTTATCGGGGAAAACTTCGT
CGGGGAAAAGTGACGAAATCTTGGACAAGTGACGAATATTTTCCCCGGCC
TTAATGCGTTTACCAACTACCAGCAAGTGACGAATTTTTCCCCGACGAAG
TTTTCCCCGATAAGGTATGTATGTAAAATAACATTCATTCTTCTTGAAGG
TTTAAGTTCAAGCCTGGTGAACTGAAATGTCGTTAGTGTCTACTATAAGT
TTATTTTAAATGTGCATTTTTATTGCTCCTTCTGCAAAATGATAACCTTA
TAATTTCACCTTTTTTTACCATTGCAGTTGTTGTAGACACGAACAAATGG
TACCATTCAACTTACATCCACCCTGAAGGAGGCCTCGCCATCACCATCGG
CTCCGAATATGATTGAAGTTGCTGTTTTTCATACATAACTGGCCGGGAAC
TCGCCTTAGTAAATGTTTCATAGATTACTTGGCAATTCTTGACATGCGTA
AGTCAAGATGATTACGTCATTTTTCACATCGGAAACTCCCGAAAATCACT
CATACGTCAAATTCCAGTGTTTTCGGGTGTTTCCGATAGGGAAATGGCAT
AATCTTGACTTACACACATCAAGAATAAATGTCACACAAGTGTTTGTTGC
GGTTGTTCGACTTTTACTGTGCAGGAAAATCTAACCAATCGAATGTATTT
ATGAAAACAATAAGAAGACTTTGTAATATATTTTCACTGTAGTATTTATG
AAATCGTTAAGAAATTTTTTTTTTTGACATATGTTCTTGAAGCTCTTGAA
ATTGAATTTTTTTCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013718XLOC_013718Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024439-exon-sc0000492-1575043694:219601..219658TCONS_00024439-exon-sc0000492-1575043694:219601..219658Clytia hemisphaericaexon
TCONS_00024439-exon-sc0000492-1575043694:217793..217928TCONS_00024439-exon-sc0000492-1575043694:217793..217928Clytia hemisphaericaexon
TCONS_00024439-exon-sc0000492-1575043694:217315..217447TCONS_00024439-exon-sc0000492-1575043694:217315..217447Clytia hemisphaericaexon
TCONS_00024439-exon-sc0000492-1575043694:216342..216831TCONS_00024439-exon-sc0000492-1575043694:216342..216831Clytia hemisphaericaexon
TCONS_00024439-exon-sc0000492-1510915933:219601..219658TCONS_00024439-exon-sc0000492-1510915933:219601..219658Clytia hemisphaericaexon
TCONS_00024439-exon-sc0000492-1510915933:217793..217928TCONS_00024439-exon-sc0000492-1510915933:217793..217928Clytia hemisphaericaexon
TCONS_00024439-exon-sc0000492-1510915933:217315..217447TCONS_00024439-exon-sc0000492-1510915933:217315..217447Clytia hemisphaericaexon
TCONS_00024439-exon-sc0000492-1510915933:216342..216831TCONS_00024439-exon-sc0000492-1510915933:216342..216831Clytia hemisphaericaexon
TCONS_00024439-exon-sc0000492-1491911889:219601..219658TCONS_00024439-exon-sc0000492-1491911889:219601..219658Clytia hemisphaericaexon
TCONS_00024439-exon-sc0000492-1491911889:217793..217928TCONS_00024439-exon-sc0000492-1491911889:217793..217928Clytia hemisphaericaexon
TCONS_00024439-exon-sc0000492-1491911889:217315..217447TCONS_00024439-exon-sc0000492-1491911889:217315..217447Clytia hemisphaericaexon
TCONS_00024439-exon-sc0000492-1491911889:216342..216831TCONS_00024439-exon-sc0000492-1491911889:216342..216831Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000492supercontigsc0000492:216342..219658 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	2.37383e-05	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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