TCONS_00024440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024440
Unique NameTCONS_00024440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024440 ID=TCONS_00024440|Name=TCONS_00024440|organism=Clytia hemisphaerica|type=transcript|length=1449bp
TTTCAAGATTTCTACCAAGAAAAATCTATCACAAAATCCCACCATGTCAC
GGTTGGAGAAACGTATGGAAGCCAACCTACAATCTTTATTCACCAACGCT
CTTCGCAATGGAATCCCACAAAACCAACTCCAACGAATCAGCCGAGTCGA
AAATTCAATCAAGCCAAAGTATACTACCAAGCCTGTCAACAAGAAATACT
ACATGATGATATTTTCGATCATTTGTGTTCTGCTGGCTGCTGGTATACCT
CAAGAGCATTATGGTCAGCCATTGCAATACCTTAATGCATTGTTTAAAGT
ACGTGTATTTGATCCGTTCGGGAAATGTTGGCTACATCCTTCATACACCA
CATATGATCTAATGAGACCAATTGCTAAATGTGATGTCTATCGGAATCTC
TCCGAGGTTCCCATTGTTCAAAACATGACTcgtcaacattttcttcaaaa
cttCGCATATACTGGCACTCCGGTCCTTATCAAAGGTGGTGCTGCAACAT
GGCCAGCACTCAACACGTTCagttataaatatttcaaaagactaTACACT
GATATGAatgcttttgaagattttgaaactTATAGATGTCAGTTCTTCGA
ATATAAAACGAATTTGAGATCATTGAGAGACGTGTTCAAAATGAGCAAAA
GGAGAGCAGCCTTGAAGAAAGATCAGTGGTATATCGGATGGAGCAATTGC
TTACCGCGAATTCAAACCATTTTGCGGAGACACTACCAACGTCCAACTTT
CTTGCCTGTGGATTCTGAATCAAGTTCACTAGACTGGATATTCATGGGTG
GAAGTGGAAGAGGGGCTATGATGCATATCGATGCAGTGAATCGTCCATCC
TGGCAAGCAATGATCAAAGGCAAGAAAACATGGACCATCCAACCACCTCC
AGAATGTCTCCTTCATTCATCGAAAAGACTTCAAGTGACCATGGAACCTG
GTGACATCCTTGTTGTAGACACGAACAAATGGTACCATTCAACTTACATC
CACCCTGAAGGAGGCCTCGCCATCACCATCGGCTCCGAATATGATTGAAG
TTGCTGTTTTTCATACATAACTGGCCGGGAACTCGCCTTAGTAAATGTTT
CATAGATTACTTGGCAATTCTTGacatgcgtaagtcaagatgattacgtc
atttttcacaTCGGAAACTCCCGAAAATCACTCATACGTCAAATTCCAgt
gttttcgggtgtttccgatagggaaATGGCATAATCTTGACTTACACACA
TCAAGAATAAATGTCACACAAGTGTTTGTTGCGGTTGTTCGACTTTTACT
GTGCAGGAAAATCTAACCAATCGAATGTATTTATGAAAACAATAAGAAGa
ctttgtaatatattttcacTGTAGTATTTATGAAATcgttaagaaatttt
tttttttgacatatGTTCTTGAAGCtcttgaaattgaatttttttcttc
Run BLAST on NCBI

transcript from alignment at sc0000492:216342..220773-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024440 ID=TCONS_00024440|Name=TCONS_00024440|organism=Clytia hemisphaerica|type=transcript|length=4432bp|location=Sequence derived from alignment at sc0000492:216342..220773- (Clytia hemisphaerica)
TTTCAAGATTTCTACCAAGAAAAATCTATCACAAAATCCCACCATGTCAC
GGTTGGAGAAACGTATGGAAGCCAACCTACAATCTTTATTCACCAACGCT
CTTCGCAATGGAATCCCACAAAACCAACTCCAACGAATCAGCCGAGTCGA
AAATTCAATCAAGCCAAAGTATACTACCAAGCCTGTCAACAAGAAATACT
ACATGATGATATTTTCGATCATTTGTGTTCTGCTGGCTGCTGGTATACCT
CAAGAGCATTATGGTCAGCCATTGCAATACCTTAATGCATTGTTTAAAGT
ACGTGTATTTGATCCGTTCGGGAAATGTTGGCTACATCCTTCATACACCA
CATATGATCTAATGAGACCAATTGCTAAATGTGATGTCTATCGGAATCTC
TCCGAGGTAAGCTTCGTTGATATTTTGAATTACTGATTGGTCTTAAGATT
TTAAAATTGGTTTTATTGGACATGGTACATAGCCCAATAACTTTTATACG
TTTTTTATAATAAAATCCCAAGTTTTTGAAACCCTTGGATTTCTTAACTA
TTTGTGTTTTAAGCCCGAAAAGACTCTAACATGTTCTTGTTTTCACCATT
TCGTTGGTATGTTTGTTCCTAAGAAATTGAGTGTTTAAGAGTCCACAAAG
CTTTTATAATGTTCTTAACTTGTTCTTAATATTTTGGCCATCTAAGCCTT
AAGTTCTTATATAGTTTGCTCTCATAAAAACGTTTAATTTGTGGTTCTTC
TTCAGGTTCCCATTGTTCAAAACATGACTCGTCAACATTTTCTTCAAAAC
TTCGCATATACTGGCACTCCGGTCCTTATCAAAGGTGGTGCTGCAACATG
GCCAGCACTCAACACGTTCAGTTATAAATATTTCAAAAGACTATACACTG
ATATGAATGCTTTTGAAGATTTTGAAACTTATAGATGTCAGTTCTTCGAA
TATAAAACGAATTTGAGATCATTGAGAGACGTGTTCAAAATGAGCAAAAG
GAGAGCAGCCTTGAAGAAAGATCAGTGGTATATCGGATGGTAATACATTC
AGTTCTCTTTTCTGGCTTTTTGGACCTCCCTTAAGGTAGTCCTTTAAATT
AACCCTTGTCCGTTNTGTTCAAAATGAGCAAAAGGAGAGCAGCCTTGAAG
AAAGATCAGTGGTATATCGGATGGTAATACATTCAGTTCTCTTTTCTGGC
TTTTTGGACCTCCCTTAAGGTAGTCCTTTAAATTAACCCCTGTCCCTTTC
GTTCGTCCGTTCGTCCGTTCGTCTGTTGCCAGCTTTTCTCGGGATCGGCT
CATTAGTTTTTTCTAATTTTTTGCACAATGATGCAAAATGGCGATGCCCA
AAATGTGACGAAGCCCGATTTTCGAAAAAAAAAATTTTTCCGGCCGAAAA
TGGCGGAAATATGCCGGAAAGACTGGTTTTTCGGCATTTTCTCGAGATTT
CCTGTAGTTTTTTCAGATTTTTTGCTCAAAGATGTGTATAAACAATGCCC
AAAACATGGCCGAGTCCGATTTTTGAGAAAAAAAATTTTTCGGCCGAAAA
TGCCGGAAATCGCCGTTTTTCTGGATTTTCATTGGACTTTTTCCATATAA
TTGGTTGTTTTTTCATTCAAAAACATTATTAATAGCAATGCCCACCATCA
AGCATGTTTCAATTTTCAATAAAATTGATTTTTGAAGCCGGAACTTTCCA
AAAATCGCCGGAACAGCCGATTTTCGCCGGAAAACGGTATTTCTTGAATT
TCTTGAGTTGTACTGTATTTTTTTTAATGAAAATTTGCACACTGATGCAA
TATGACAATACTTAAAATGTGACTCAGCCCGATTTTCGAAAAAAAATCAT
TTCCGGCCGAAGATGCCGGAAATATGCCGGAAAAACTTTTTTTTTTTACT
TTTTCTCGAATTTTCATTTTCAGTTTTCTCTGATTTTTTGCAGAAAGATG
CGTATTCGCAATGCTCAAAAAATGGCAGAGTTCGATTTTTGAGAAAAAAT
CTTTTTCCGGTTGACAATGCCGGAAATCGCCGTTTTTGCAGATTTTCATT
GGATTTTCTCCTTATATTTCTATGTTTTTCACACAAAAACATTATTGATA
ACAATGCTCACCATCAAGCATGATTCAATTGTCAATAAAACTGATTTTTG
CGACCAGAACCTCCTATTTATTTTTTCCCTACAACCCTTCCCTCTCCCCC
CCATCAACAATCAATGATGAATTGATTGTGTTGTGCATTTTCGCTAAACG
CTATATTTTCTGACTGATTTTTTTCTTTTTTCTTTTCGCATTGCTATCTA
ACTTTCGTCATCAGGTAGGTCCATTCAGCATGTTGCTTGTTATTCTTATT
CTGTCCCTTATCTCCCTCCATAGAGTACCTATATTTTCAGGTTTTTACAA
CCTATAATTCAAAGAGAAAGGTCATTTGTTTGGTCGTTTTCTGTCGGCTA
ATGCGATCTAAATATTATGGTAATTTTAAGACATGCTATAACTTACCCGA
ACTTTAGTCCCCTCGGTAGAGTGCCTTTGTCATTTTGCAAAACCAGTCAA
TCGAATTAAAAGATTGTCAGACATTTAACGTCCACGACGTTTGAAGAACA
ATGTTTAACGGTTTGCTCCCAGCTTAACAAGCTTAACTTAATGAATCCAA
ACACTTCCCCAAATTGTATTTCCACATATCCCACGACGTTTAAAGTTGTT
TGGAAAATTCTCGATTTGACCAGCCCTCGTGACTGATTTCAATTCTTCTT
TTTATCCCCTGTAAACATTGATCCGGGCCGAAGAGAGAAATAACGCTAAA
GAATTGAAAGTATATAAAGGACACCCAATTTGTTTACTTTTCCAGGAGCA
ATTGCTTACCGCGAATTCAAACCATTTTGCGGAGACACTACCAACGTCCA
ACTTTCTTGCCTGTGGATTCTGAATCAAGTTCACTAGACTGGATATTCAT
GGGTGGAAGTGGAAGAGGGGCTATGATGCATGTAAGTCAGGAAGTATAAT
AGTTTCTTTAAGAAAAGAAAATCGTAGAGAGGGACTTGAAAGAGAGGTGA
AAGAATTTGATACAGGGGCGTGTTAGTACCTGAAAGAAAGTGTTGATGAC
AATCTACCCTTACTTTCTCCATCCACATTAGTTTCCAGCCCTTGATGACG
GCTTGTTAATTAACAGCAAGTAGAAATCTACCCTCTCTGGAAAATACGAC
CAACCAAACGGGATTGCTAGTTTCCCTTTGCTGTGGTATCTATAATCCAT
GTAGAATGAATGAATAGATGTCATAGGTGTAACACATTAGGAACTAAAGT
TCCTTAAATATTGTTTCCCTTTTCAGATCGATGCAGTGAATCGTCCATCC
TGGCAAGCAATGATCAAAGGCAAGAAAACATGGACCATCCAACCACCTCC
AGAATGTCTCCTTCATTCATCGAAAAGACTTCAAGTGACCATGGAACCTG
GTGACATCCGTGAGTACTAAACTTCACTGTTTTCAGGATGCTCAGATACT
TCTTTATATTCACATAAACATTTCTTTCATTCCTTAAAAATCTATCGATA
GATTTTTACACTCTGATAATAACCTCTTGTAGTGAAGGTCGAATTGACTT
CTTTTCACCATTAAATTATTGGCCTACGGAAATATCGTTCGATACCTTAT
CGGGGAAAACTTCGTCGGGGAAAAGTGACGAAATCTTGGACAAGTGACGA
ATATTTTCCCCGGCCTTAATGCGTTTACCAACTACCAGCAAGTGACGAAT
TTTTCCCCGACGAAGTTTTCCCCGATAAGGTATGTATGTAAAATAACATT
CATTCTTCTTGAAGGTTTAAGTTCAAGCCTGGTGAACTGAAATGTCGTTA
GTGTCTACTATAAGTTTATTTTAAATGTGCATTTTTATTGCTCCTTCTGC
AAAATGATAACCTTATAATTTCACCTTTTTTTACCATTGCAGTTGTTGTA
GACACGAACAAATGGTACCATTCAACTTACATCCACCCTGAAGGAGGCCT
CGCCATCACCATCGGCTCCGAATATGATTGAAGTTGCTGTTTTTCATACA
TAACTGGCCGGGAACTCGCCTTAGTAAATGTTTCATAGATTACTTGGCAA
TTCTTGACATGCGTAAGTCAAGATGATTACGTCATTTTTCACATCGGAAA
CTCCCGAAAATCACTCATACGTCAAATTCCAGTGTTTTCGGGTGTTTCCG
ATAGGGAAATGGCATAATCTTGACTTACACACATCAAGAATAAATGTCAC
ACAAGTGTTTGTTGCGGTTGTTCGACTTTTACTGTGCAGGAAAATCTAAC
CAATCGAATGTATTTATGAAAACAATAAGAAGACTTTGTAATATATTTTC
ACTGTAGTATTTATGAAATCGTTAAGAAATTTTTTTTTTTGACATATGTT
CTTGAAGCTCTTGAAATTGAATTTTTTTCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013718XLOC_013718Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024440-exon-sc0000492-1575043694:220368..220773TCONS_00024440-exon-sc0000492-1575043694:220368..220773Clytia hemisphaericaexon
TCONS_00024440-exon-sc0000492-1575043694:219735..220018TCONS_00024440-exon-sc0000492-1575043694:219735..220018Clytia hemisphaericaexon
TCONS_00024440-exon-sc0000492-1575043694:217793..217928TCONS_00024440-exon-sc0000492-1575043694:217793..217928Clytia hemisphaericaexon
TCONS_00024440-exon-sc0000492-1575043694:217315..217447TCONS_00024440-exon-sc0000492-1575043694:217315..217447Clytia hemisphaericaexon
TCONS_00024440-exon-sc0000492-1575043694:216342..216831TCONS_00024440-exon-sc0000492-1575043694:216342..216831Clytia hemisphaericaexon
TCONS_00024440-exon-sc0000492-1510915933:220368..220773TCONS_00024440-exon-sc0000492-1510915933:220368..220773Clytia hemisphaericaexon
TCONS_00024440-exon-sc0000492-1510915933:219735..220018TCONS_00024440-exon-sc0000492-1510915933:219735..220018Clytia hemisphaericaexon
TCONS_00024440-exon-sc0000492-1510915933:217793..217928TCONS_00024440-exon-sc0000492-1510915933:217793..217928Clytia hemisphaericaexon
TCONS_00024440-exon-sc0000492-1510915933:217315..217447TCONS_00024440-exon-sc0000492-1510915933:217315..217447Clytia hemisphaericaexon
TCONS_00024440-exon-sc0000492-1510915933:216342..216831TCONS_00024440-exon-sc0000492-1510915933:216342..216831Clytia hemisphaericaexon
TCONS_00024440-exon-sc0000492-1491911889:220368..220773TCONS_00024440-exon-sc0000492-1491911889:220368..220773Clytia hemisphaericaexon
TCONS_00024440-exon-sc0000492-1491911889:219735..220018TCONS_00024440-exon-sc0000492-1491911889:219735..220018Clytia hemisphaericaexon
TCONS_00024440-exon-sc0000492-1491911889:217793..217928TCONS_00024440-exon-sc0000492-1491911889:217793..217928Clytia hemisphaericaexon
TCONS_00024440-exon-sc0000492-1491911889:217315..217447TCONS_00024440-exon-sc0000492-1491911889:217315..217447Clytia hemisphaericaexon
TCONS_00024440-exon-sc0000492-1491911889:216342..216831TCONS_00024440-exon-sc0000492-1491911889:216342..216831Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000492supercontigsc0000492:216342..220773 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.0988	23.7176	7.40884	4.45213	58.4919	42.1625	112.506	104.447	54.5992	71.7318	55.7292	28.3448	9.1725	9.36859	3.41919	3.39041	4.81138	5.83902	10.3139	9.46024	0.971117	1.20618	12.0407	8.39545	3.35296	3.63327	0.946375	1.55835	6.65831	9.05235
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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