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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024563 ID=TCONS_00024563|Name=TCONS_00024563|organism=Clytia hemisphaerica|type=transcript|length=1975bpRun BLAST on NCBI protein sequence of TCONS_00024563-protein >TCONS_00024563-protein ID=TCONS_00024563-protein|Name=TCONS_00024563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp MVEEKPTASTAKVPSEKDLEEVAELMSVGKRHLICNEPEKALDYFVELCERun BLAST on NCBI transcript from alignment at sc0000502:211475..223194- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024563 ID=TCONS_00024563|Name=TCONS_00024563|organism=Clytia hemisphaerica|type=transcript|length=11720bp|location=Sequence derived from alignment at sc0000502:211475..223194- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000502:211475..223194- >TCONS_00024563 ID=TCONS_00024563|Name=TCONS_00024563|organism=Clytia hemisphaerica|type=CDS|length=15675bp|location=Sequence derived from alignment at sc0000502:211475..223194- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024563 vs. Swiss-Prot (Human)
Match: NASP (Nuclear autoantigenic sperm protein OS=Homo sapiens GN=NASP PE=1 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 7.016e-23 Identity = 75/250 (30.00%), Postives = 139/250 (55.60%), Query Frame = 3
Query: 762 VSHMELAWEMLELTCSICSRMVTEKRDIEKAEEMLAEAKYGLAQISMEQEQYERAIEDFNSCLEHYTKTLDDKLDRRIAEIHYNVGLAFSFDKKFEEAVTSFKEAKSLLESRLDVLKGKIEKHERESGKGKAPTELLDWNKEMKELEDLVLLDMNAKIEDAEESKKQADAELVAMKEKTKDLFGALSSATGFETGFGFDEST------PTTEVKVHDATTNV-------RKGSVKRPSDDEGVSDAKKAK 1472
+ ++ELAW+ML+L ++++ ++++ ++A+ A+A L ++S+E E Y +A+E+F SCL + L+ DR +AE HY +GLA+ ++ +++EAV F ++ ++E+R+ VL ++++ E S ++ KE++EL++L L ++ KIEDA+ES++ + +A+K + SS +GF G G + PT + T++ RK + P D DAKKAK
Sbjct: 512 IGNLELAWDMLDL-----AKIIFKRQETKEAQLYAAQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAH-DRLLAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIENRMAVLNEQVKEAEGSSA---------EYKKEIEELKEL-LPEIREKIEDAKESQRSGNVAELALKATLVE-----SSTSGFTPGGGGSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKD----DAKKAK 736 The following BLAST results are available for this feature:
BLAST of TCONS_00024563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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