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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024616 ID=TCONS_00024616|Name=TCONS_00024616|organism=Clytia hemisphaerica|type=transcript|length=4357bpRun BLAST on NCBI transcript from alignment at sc0000506:7059..25530+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024616 ID=TCONS_00024616|Name=TCONS_00024616|organism=Clytia hemisphaerica|type=transcript|length=18472bp|location=Sequence derived from alignment at sc0000506:7059..25530+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00024616 vs. Swiss-Prot (Human)
Match: ACSA (Acetyl-coenzyme A synthetase, cytoplasmic OS=Homo sapiens GN=ACSS2 PE=1 SV=1) HSP 1 Score: 899.042 bits (2322), Expect = 0.000e+0 Identity = 421/664 (63.40%), Postives = 522/664 (78.61%), Query Frame = 1
Query: 1681 VFLDGHVKSMDQYNQMHKQSVEDPESFWTKIANQFYWKEKWSGKFMEYNFDVRKGDIFIKFMEGGKTNICYNVLDRVAQETP--DKIAFYWEGNDPANCKTYTYKQLLDEVCKFSNVLKSKGLKKGDRVALYMPMIIELVVAMLACARIGIIHSIVFAGFSADSLAERLKDGDCSLLITADYSVRGDKSIDLKTVADNALKECGEDGVDIKMCIVVKN-SSAE---GDGT-HSPKQKKA--KTSVSWNEDVDLWWHDLMTGASNDCQCEWMDAEDPLFILYTSGSTGKPKGVLHTTAGYMLYAATTFKYSFDYHEGEVYWCTADIGWITGHSYIVYGPMANAATSVMFEGTPLYPDAGRMWAVVEKYKVSKFYTAPTAIRMLMKFSDDFVKKYDRSSLKVLGTVGEPINPEAWLWYYKIVGEERCSIVDTFWQTETGGHVIGGMPGATMMKPGSASFPFFGAVPVIMDEDGKEKEGVEVDQGYLVFKQPWPGLMRTLYGNHSRYQAAYFERFPGYYCAGDGAYRDKDGYYWITGRIDDLMNVSGHLLSTAQVESAIVEHSSISEAAVVGYPHPVKGTGIYCFVTPKNGIRFCDALVSELKQKVRTRIGPIATPDVIHEAPGLPKTRSGKIMRRILRKIAAGQTDIGDTTTLADSTVVDKLFTNR 3645
V HV S+ +Y ++H++SVE+P FW IA +FYWK G F+ YNFDV KG IFI++M+G TNICYNVLDR E DK+AFYWEGN+P TY QLL +VC+FSNVL+ +G++KGDRVA+YMPMI ELVVAMLACARIG +HSIVFAGFS++SL ER+ D CSLLIT D RG+K ++LK +AD AL++C E G ++ CIVVK+ AE GD T SP K++ +SWN+ +DLWWH+LM A ++C+ EW DAEDPLFILYTSGSTGKPKGV+HT GYMLY ATTFKY FD+H +V+WCTADIGWITGHSY+ YGP+AN ATSV+FEG P YPD R+W++V+KYKV+KFYTAPTAIR+LMKF D+ V K+ R+SL+VLGTVGEPINPEAWLWY+++VG +RC IVDTFWQTETGGH++ +PGAT MKPGSA+FPFFG P I++E +E +GYLVFKQPWPG+MRT+YGNH R++ YF++FPGYY GDG RD+DGYYWITGRIDD++NVSGHLLSTA+VESA+VEH +++EAAVVG+PHPVKG +YCFVT +G F L ELK+++R +IGPIATPD I APGLPKTRSGKIMRR+LRKIA D+GD +T+AD +V+ LF++R
Sbjct: 35 VSRSAHVPSLQRYRELHRRSVEEPREFWGDIAKEFYWKTPCPGPFLRYNFDVTKGKIFIEWMKGATTNICYNVLDRNVHEKKLGDKVAFYWEGNEPGETTQITYHQLLVQVCQFSNVLRKQGIQKGDRVAIYMPMIPELVVAMLACARIGALHSIVFAGFSSESLCERILDSSCSLLITTDAFYRGEKLVNLKELADEALQKCQEKGFPVRCCIVVKHLGRAELGMGDSTSQSPPIKRSCPDVQISWNQGIDLWWHELMQEAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATTFKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDVNRLWSIVDKYKVTKFYTAPTAIRLLMKFGDEPVTKHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCPIVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILNE--SGEELEGEAEGYLVFKQPWPGIMRTVYGNHERFETTYFKKFPGYYVTGDGCQRDQDGYYWITGRIDDMLNVSGHLLSTAEVESALVEHEAVAEAAVVGHPHPVKGECLYCFVTLCDGHTFSPKLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSGKIMRRVLRKIAQNDHDLGDMSTVADPSVISHLFSHR 696 The following BLAST results are available for this feature:
BLAST of TCONS_00024616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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