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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024676 ID=TCONS_00024676|Name=TCONS_00024676|organism=Clytia hemisphaerica|type=transcript|length=2358bp
aattcaggtgacctctaagatttaggtaacgcCTGgatgccaaatatttt
aggtgacccctaagccaattGAGCATTGGCTCTAACTCCGTCGAAGCCAT
TGGTTGGAGCTCGTTTACCAGAAGAAGCTGTTAGCCAAAGCTAACAAAAC
TGTCCTTGGGGTTCAGAATTAAATAGAGAGCAATCGGATGTGCTTTTTAT
AGATTTATACTACCATGTCCTAAGTTCATAATGTCTAGTTCCATATTAAA
ATTCCTCTCTCTAATTAAATAGTTGCGGCTAGATACAAAGAATAACCTTC
AGCATAATGCCGAAGGTGGGCCGTATTTCATATAGCTGCCTGACAGAAGC
CATTagtttcttatttatttcttagaAAAAGAAGATAATATATATTTAGC
TTTGTAccattttatgttttatgtAGTACTCTTAGGAATTGAtgttgaaa
aacattttaacaCGCACTGTTTACATCTATAGTGAAGACGTGCTATTGCA
CAAATCTTTAGAAAATAATATGAAGACGTGTTATTGGAATAAAGTGGGCT
AAAAGTGGGCGGTCTAAAGTGAAATGTTATGTAAAGCCGACACGGTGCCG
TCTTTTGATTCGCATCAAGTGGTTTTGCCGATCATAATCAAGAAAGTAGA
CAATGAGCGGGCCGACTAAACCAGAGCTTAGCCTATACTAagcgtcaccc
gcgtttttatATGCATATAACGTCTATTCTGTCTTTAGTCACTTGTGGTG
ATATCAAAACAGCGCAACCTGGTTGCTGTAGACCTGTGCTTGACCAACTT
CTGCAGAAGTGCTTAATGGTACTtatttatcaagcaaaattggATAGAGA
GCTGAATTGGCTCTGGTCACAAGTGGGTTAGATAACGTATGACACCTCCA
GGAATCAAACCTGGGCAACTGCGCCAACCATACCATGCAACACCTAAAAT
ATAGACTTTTGTCTTATCCAGCGTTTGAGACAGTTGTTCATATCATAAGT
ATATTTTAAGTCTAATAAGATTTCAACCATAGAATTTTGTCTTCGCCAGG
GTGGATatttaaagtttaaattttttagttTGAAGAATTATGGAATCATT
GCCCAATAAAAAATCTATCAGTCACAGAGAAATGTTGGATATTACACAAA
AGCAGATTGAGGAGATATTGAAAGACCCCTTACTGTCTGACATCCCAAAC
CTTGTGACCCCTGAAGAACTGAAAGCAAAAATTGATCTGGAAAAAGGGAA
tgcttttgtgatttttttgaaacGAGAAACAGAAGAAGGACATCAGAATA
TTGACATTATTGTAAATGATCGGACTACTATCTTGGAAATGAAGAAATTA
ATTGAGCGAAAAATGACAaggatcattgaaatagaagaTGGACCAAAGTG
CCTTAGCTGGAAGTATTTTTGGAAGACTTTCTGGCTTGTCCACAACAATG
AAAAGCTAAAAGACgataaaaaaaccttgaaagattataacatcaaaaac
aattctgaactgatttttctaaaaaggctCAGGAGGGAATGACTGTGAAA
TTACTTATTTCATAACACTATGTCTATTGTAATATTTATCTCGTATAAAA
GAACGTTCACCTACCTGTACAATATCCTCCAATTCTTTTCTGATCTGTCA
GAGATATTTGTTTCTCTTCTCTTCTCTCTTTAAATTTGAGATGTTTGTTG
TATGTTTTAGGAGAAAATAAATGTACAATTTAATGTAAAGTGCATACACC
ATGGACTACCATCAATTGGTCagttaaaagttgaaaatggcTAGTGAACA
AGTTGAGCTGGTTTTATCCACACCGAGCTTATTGCGAAATGTGAACCTCG
ACAGAAGGAGTTGTGAATTCAATCAAAGACCTCACTACTGTATCAACAAA
TGTAACATTCACTTGAAAAGACTGGAACAATTTCTAATTGGcttcaaaaa
tgaagtttacaAACAAGAAATCAATCTCAAAGAGGAACTAGCCGCAAGCG
TGCAAAGCTTCAACGAAAGTGACAATGTCAATCATCAGATTCGCCTGGAA
CCCATTACCAGTGGTGCGGAACTAGAGGTATTCACTGACGAATCTCATTC
ACTTTTCTCGAGTGAAGAAGGTGACAGATCAATCCTGTCAACGGAAATCA
GTATGGACAATGCGCTTTCACAGATACCTCAACAACAAATCGCCATATTA
CAGAATGTCAAAGCACTGTTGAACCGTTTAGATGAGCAATGTGTGAAAAC
TAAAGAACAATTACTGAAGGAGCGAGAACGCACTGGCAACCTTCAAGCTC
AGATTGATGCGCATGCGTACAGGAGAATTCATGCTCTACCAATGGCTGTG
CAAAGagg Run BLAST on NCBI protein sequence of TCONS_00024676-protein >TCONS_00024676-protein ID=TCONS_00024676-protein|Name=TCONS_00024676-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MASEQVELVLSTPSLLRNVNLDRRSCEFNQRPHYCINKCNIHLKRLEQFL
IGFKNEVYKQEINLKEELAASVQSFNESDNVNHQIRLEPITSGAELEVFT
DESHSLFSSEEGDRSILSTEISMDNALSQIPQQQIAILQNVKALLNRLDE
QCVKTKEQLLKERERTGNLQAQIDAHAYRRIHALPMAVQR Run BLAST on NCBI transcript from alignment at sc0000506:232611..235456- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024676 ID=TCONS_00024676|Name=TCONS_00024676|organism=Clytia hemisphaerica|type=transcript|length=2846bp|location=Sequence derived from alignment at sc0000506:232611..235456- (Clytia hemisphaerica)
AATTCAGGTGACCTCTAAGATTTAGGTAACGCCTGGATGCCAAATATTTT
AGGTGACCCCTAAGCCAATTGAGCATTGGCTCTAACTCCGTCGAAGCCAT
TGGTTGGAGCTCGTTTACCAGAAGAAGCTGTTAGCCAAAGCTAACAAAAC
TGTCCTTGGGGTTCAGAATTAAATAGAGAGCAATCGGATGTGCTTTTTAT
AGATTTATACTACCATGTCCTAAGTTCATAATGTCTAGTTCCATATTAAA
ATTCCTCTCTCTAATTAAATAGTTGCGGCTAGATACAAAGAATAACCTTC
AGCATAATGCCGAAGGTGGGCCGTATTTCATATAGCTGCCTGACAGAAGC
CATTAGTTTCTTATTTATTTCTTAGAAAAAGAAGATAATATATATTTAGC
TTTGTACCATTTTATGTTTTATGTAGTACTCTTAGGAATTGATGTTGAAA
AACATTTTAACACGCACTGTTTACATCTATAGTGAAGACGTGCTATTGCA
CAAATCTTTAGAAAATAATATGAAGACGTGTTATTGGAATAAAGTGGGCT
AAAAGTGGGCGGTCTAAAGTGAAATGTTATGTAAAGCCGACACGGTGCCG
TCTTTTGATTCGCATCAAGTGGTTTTGCCGATCATAATCAAGAAAGTAGA
CAATGAGCGGGCCGACTAAACCAGAGCTTAGCCTATACTAAGCGTCACCC
GCGTTTTTATATGCATATAACGTCTATTCTGTCTTTAGTCACTTGTGGTG
ATATCAAAACAGCGCAACCTGGTTGCTGTAGACCTGTGCTTGACCAACTT
CTGCAGAAGTGCTTAATGGTACTTATTTATCAAGCAAAATTGGATAGAGA
GCTGAATTGGCTCTGGTCACAAGTGGGTTAGATAACGTATGACACCTCCA
GGAATCAAACCTGGGCAACTGCGCCAACCATACCATGCAACACCTAAAAT
ATAGACTTTTGTCTTATCCAGCGTTTGAGACAGTTGTTCATATCATAAGT
ATATTTTAAGTCTAATAAGATTTCAACCATAGAATTTTGTCTTCGCCAGG
GTGGATATTTAAAGTTTAAATTTTTTAGTTTGAAGAATTATGGAATCATT
GCCCAATAAAAAATCTATCAGTCACAGAGAAATGTTGGATATTACACAAA
AGCAGATTGAGGAGATATTGAAAGACCCCTTACTGTCTGACATCCCAAAC
CTTGTGACCCCTGAAGAACTGAAAGCAAAAATTGATCTGGAAAAAGGGAA
TGCTTTTGTGATTTTTTTGAAACGAGAAACAGAAGAAGGACATCAGAATA
TTGACATTATTGTAAATGATCGGACTACTATCTTGGAAATGAAGAAATTA
ATTGAGCGAAAAATGACAAGGATCATTGAAATAGAAGATGGACCAAAGTG
CCTTAGCTGGAAGTATTTTTGGAAGACTTTCTGGCTTGTCCACAACAATG
AAAAGCTAAAAGACGATAAAAAAACCTTGAAAGATTATAACATCAAAAAC
AATTCTGAACTGATTTTTCTAAAAAGGCTCAGGAGGGAATGACTGTGAAA
TTACTTATTTCATAACACTATGTCTATTGTAATATTTATCTCGTATAAAA
GAACGTTCACCTACCTGTACAATATCCTCCAATTCTTTTCTGATCTGTCA
GAGATATTTGTTTCTCTTCTCTTCTCTCTTTAAATTTGAGATGTTTGTTG
TATGTTTTAGGAGAAAATAAATGTACAATTTAATGTAAAGTGCATACACC
ATGGACTACCATCAATTGGTCAGTTAAAAGTTGAAAATGGCTAGTGAACA
AGGTAATCAGAAATTTCCTAGACAAACGATTTGAAGTTTCTAAACTTCCC
TTATATGAATACATACAACAAGACATAAAGTAGAACAATACTTAGTGCTC
CTGAATCAGCGACGAAACTTTTAGCAAATTGATTTTCCTCTTTTCTAGTT
GAGCTGGTTTTATCCACACCGAGCTTATTGCGAAATGTGAACCTCGACAG
AAGGAGTTGTGAATTCAATCAAAGACCTCACTACTGTATCAACAAATGTA
ACATTCACTTGAAAAGACTGGAACAATTTCTAATTGGCTTCAAAAATGAA
GTTTACAAACAAGAAATCAATCTCAAAGGTACGTCTGCTTTTGTGTTATG
GTTTTTAAAGTAAAATCTGTGTGATAATGATACAAAGTATGAATTTTTTA
AAACAGTGATGATGTTTTATGTGCATGAATCTATGGAAAGATTAGCTTTA
TGTTGAATTTTCAACCGTTTGTATTTCGACCAGTTTTATACTATTGTTTG
TGAATTGACTTTCCAGAGGAACTAGCCGCAAGCGTGCAAAGCTTCAACGA
AAGTGACAATGTCAATCATCAGATTCGCCTGGAACCCATTACCAGTGGTG
CGGAACTAGAGGTCAGTGAATTCATAAATTGTGTTTATCAGCCCACCCAG
CATTCTTTCAAGCCTCTTATAATAACGTTTTTTTCCTAATTTAAGAAATA
AAACAACTTATTGATAGTACCCTGACTATTTAGTACCCTAAATTTGCATC
TTTTTTTATCTGCAGGTATTCACTGACGAATCTCATTCACTTTTCTCGAG
TGAAGAAGGTGACAGATCAATCCTGTCAACGGAAATCAGTATGGACAATG
CGCTTTCACAGATACCTCAACAACAAATCGCCATATTACAGAATGTCAAA
GCACTGTTGAACCGTTTAGATGAGCAATGTGTGAAAACTAAAGAACAATT
ACTGAAGGAGCGAGAACGCACTGGCAACCTTCAAGCTCAGATTGATGCGC
ATGCGTACAGGAGAATTCATGCTCTACCAATGGCTGTGCAAAGAGG Coding sequence (CDS) from alignment at sc0000506:232611..235456- >TCONS_00024676 ID=TCONS_00024676|Name=TCONS_00024676|organism=Clytia hemisphaerica|type=CDS|length=2280bp|location=Sequence derived from alignment at sc0000506:232611..235456- (Clytia hemisphaerica)
GTATTCACTGACGAATCTCATTCACTTTTCTCGAGTGAAGAAGGTGACAG
ATCAATCCTGTCAACGGAAATCAGTATGGACAATGCGCTTTCACAGATAC
CTCAACAACAAATCGCCATATTACAGAATGTCAAAGCACTGTTGAACCGT
TTAGATGAGCAATGTGTGAAAACTAAAGAACAATTACTGAAGGAGCGAGA
ACGCACTGGCAACCTTCAAGCTCAGATTGATGCGCATGCGTACAGGAGAA
TTCATGCTCTACCAATGGCTGTGCAAAGAAGGAACTAGCCGCAAGCGTGC
AAAGCTTCAACGAAAGTGACAATGTCAATCATCAGATTCGCCTGGAACCC
ATTACCAGTGGTGCGGAACTAGAGTTGAGCTGGTTTTATCCACACCGAGC
TTATTGCGAAATGTGAACCTCGACAGAAGGAGTTGTGAATTCAATCAAAG
ACCTCACTACTGTATCAACAAATGTAACATTCACTTGAAAAGACTGGAAC
AATTTCTAATTGGCTTCAAAAATGAAGTTTACAAACAAGAAATCAATCTC
AAAGATGGCTAGTGAACAAGGTATTCACTGACGAATCTCATTCACTTTTC
TCGAGTGAAGAAGGTGACAGATCAATCCTGTCAACGGAAATCAGTATGGA
CAATGCGCTTTCACAGATACCTCAACAACAAATCGCCATATTACAGAATG
TCAAAGCACTGTTGAACCGTTTAGATGAGCAATGTGTGAAAACTAAAGAA
CAATTACTGAAGGAGCGAGAACGCACTGGCAACCTTCAAGCTCAGATTGA
TGCGCATGCGTACAGGAGAATTCATGCTCTACCAATGGCTGTGCAAAGAA
GGAACTAGCCGCAAGCGTGCAAAGCTTCAACGAAAGTGACAATGTCAATC
ATCAGATTCGCCTGGAACCCATTACCAGTGGTGCGGAACTAGAGTTGAGC
TGGTTTTATCCACACCGAGCTTATTGCGAAATGTGAACCTCGACAGAAGG
AGTTGTGAATTCAATCAAAGACCTCACTACTGTATCAACAAATGTAACAT
TCACTTGAAAAGACTGGAACAATTTCTAATTGGCTTCAAAAATGAAGTTT
ACAAACAAGAAATCAATCTCAAAGATGGCTAGTGAACAAGGTATTCACTG
ACGAATCTCATTCACTTTTCTCGAGTGAAGAAGGTGACAGATCAATCCTG
TCAACGGAAATCAGTATGGACAATGCGCTTTCACAGATACCTCAACAACA
AATCGCCATATTACAGAATGTCAAAGCACTGTTGAACCGTTTAGATGAGC
AATGTGTGAAAACTAAAGAACAATTACTGAAGGAGCGAGAACGCACTGGC
AACCTTCAAGCTCAGATTGATGCGCATGCGTACAGGAGAATTCATGCTCT
ACCAATGGCTGTGCAAAGAAGGAACTAGCCGCAAGCGTGCAAAGCTTCAA
CGAAAGTGACAATGTCAATCATCAGATTCGCCTGGAACCCATTACCAGTG
GTGCGGAACTAGAGTTGAGCTGGTTTTATCCACACCGAGCTTATTGCGAA
ATGTGAACCTCGACAGAAGGAGTTGTGAATTCAATCAAAGACCTCACTAC
TGTATCAACAAATGTAACATTCACTTGAAAAGACTGGAACAATTTCTAAT
TGGCTTCAAAAATGAAGTTTACAAACAAGAAATCAATCTCAAAGATGGCT
AGTGAACAAGGTATTCACTGACGAATCTCATTCACTTTTCTCGAGTGAAG
AAGGTGACAGATCAATCCTGTCAACGGAAATCAGTATGGACAATGCGCTT
TCACAGATACCTCAACAACAAATCGCCATATTACAGAATGTCAAAGCACT
GTTGAACCGTTTAGATGAGCAATGTGTGAAAACTAAAGAACAATTACTGA
AGGAGCGAGAACGCACTGGCAACCTTCAAGCTCAGATTGATGCGCATGCG
TACAGGAGAATTCATGCTCTACCAATGGCTGTGCAAAGAAGGAACTAGCC
GCAAGCGTGCAAAGCTTCAACGAAAGTGACAATGTCAATCATCAGATTCG
CCTGGAACCCATTACCAGTGGTGCGGAACTAGAGTTGAGCTGGTTTTATC
CACACCGAGCTTATTGCGAAATGTGAACCTCGACAGAAGGAGTTGTGAAT
TCAATCAAAGACCTCACTACTGTATCAACAAATGTAACATTCACTTGAAA
AGACTGGAACAATTTCTAATTGGCTTCAAAAATGAAGTTTACAAACAAGA
AATCAATCTCAAAGATGGCTAGTGAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00024676-exon-sc0000506-1575043694:233655..235456 | TCONS_00024676-exon-sc0000506-1575043694:233655..235456 | Clytia hemisphaerica | exon |
| TCONS_00024676-exon-sc0000506-1575043694:233329..233508 | TCONS_00024676-exon-sc0000506-1575043694:233329..233508 | Clytia hemisphaerica | exon |
| TCONS_00024676-exon-sc0000506-1575043694:233046..233140 | TCONS_00024676-exon-sc0000506-1575043694:233046..233140 | Clytia hemisphaerica | exon |
| TCONS_00024676-exon-sc0000506-1575043694:232611..232891 | TCONS_00024676-exon-sc0000506-1575043694:232611..232891 | Clytia hemisphaerica | exon |
| TCONS_00024676-exon-sc0000506-1510915933:233655..235456 | TCONS_00024676-exon-sc0000506-1510915933:233655..235456 | Clytia hemisphaerica | exon |
| TCONS_00024676-exon-sc0000506-1510915933:233329..233508 | TCONS_00024676-exon-sc0000506-1510915933:233329..233508 | Clytia hemisphaerica | exon |
| TCONS_00024676-exon-sc0000506-1510915933:233046..233140 | TCONS_00024676-exon-sc0000506-1510915933:233046..233140 | Clytia hemisphaerica | exon |
| TCONS_00024676-exon-sc0000506-1510915933:232611..232891 | TCONS_00024676-exon-sc0000506-1510915933:232611..232891 | Clytia hemisphaerica | exon |
| TCONS_00024676-exon-sc0000506-1491911889:233655..235456 | TCONS_00024676-exon-sc0000506-1491911889:233655..235456 | Clytia hemisphaerica | exon |
| TCONS_00024676-exon-sc0000506-1491911889:233329..233508 | TCONS_00024676-exon-sc0000506-1491911889:233329..233508 | Clytia hemisphaerica | exon |
| TCONS_00024676-exon-sc0000506-1491911889:233046..233140 | TCONS_00024676-exon-sc0000506-1491911889:233046..233140 | Clytia hemisphaerica | exon |
| TCONS_00024676-exon-sc0000506-1491911889:232611..232891 | TCONS_00024676-exon-sc0000506-1491911889:232611..232891 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000506 | supercontig | sc0000506:232611..235456 - |
Blast
BLAST of TCONS_00024676 vs. Swiss-Prot (Human)
Match: SNR25 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens GN=SNRNP25 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 7.222e-16 Identity = 49/135 (36.30%), Postives = 84/135 (62.22%), Query Frame = 1
Query: 1135 LDITQKQIEEILKDPLLSDIPNLVTPEELKAKIDLEKGNAFVIFLKRETEEGHQNIDIIVNDRTTILEMKKLIERKMTRIIEIEDGPKCLSWKYFWKTFWLVHNNEXXXXXXXXXXXYNIKNNSELIFLKRLRRE 1539
+D+ Q+ + +++DPLL D+P VT EE+ ++I LE G A + R + + + ++V T+L++KK I+R + E E G + +SW Y W+T+ L EKL +D+K L+DY I+N E+ F+K+LR++
Sbjct: 1 MDVFQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTV---RVCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLRQK 132
The following BLAST results are available for this feature:
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