TCONS_00024802 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024802
Unique NameTCONS_00024802
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024802 ID=TCONS_00024802|Name=TCONS_00024802|organism=Clytia hemisphaerica|type=transcript|length=445bp
gttaacttagctcaaaaggtcaaaagtcaggtttttgggctatgggttgg
tattataaatgttgaccccccccctggtttTCCAGGGTTTAACCATGACT
GAAGTGTGATCATAGGTTTATTATAGAAATTTTCAACTGAAGATTGTTTA
AAAAAGACATGAAACTGTCAGTATTGATacaataattttcattacttcAA
CTATGATATCACGCTTCTGACTTCGGTTGGTTAAGCACTCTATTGATGAA
TAAAAGCATCACATCAACAAAATATGGTAATTTTTACATATCTATTAAGC
AGAAATACCCAGGCTGGTTTCCCAAATGTTCAACCAGTAAGGGAGGTAGA
GTATAACAAAACCATGTCCAGTCTGTTAAATGGTGTTTTGGTGAGGTCAA
TGAGAAATTTCCATTCACAGATTTTAAGAAGATGATGAAGTATGG
Run BLAST on NCBI

transcript from alignment at sc0000510:110683..111127

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024802 ID=TCONS_00024802|Name=TCONS_00024802|organism=Clytia hemisphaerica|type=transcript|length=445bp|location=Sequence derived from alignment at sc0000510:110683..111127 (Clytia hemisphaerica)
CCATACTTCATCATCTTCTTAAAATCTGTGAATGGAAATTTCTCATTGAC
CTCACCAAAACACCATTTAACAGACTGGACATGGTTTTGTTATACTCTAC
CTCCCTTACTGGTTGAACATTTGGGAAACCAGCCTGGGTATTTCTGCTTA
ATAGATATGTAAAAATTACCATATTTTGTTGATGTGATGCTTTTATTCAT
CAATAGAGTGCTTAACCAACCGAAGTCAGAAGCGTGATATCATAGTTgaa
gtaatgaaaattattgtATCAATACTGACAGTTTCATGTCTTTTTTAAAC
AATCTTCAGTTGAAAATTTCTATAATAAACCTATGATCACACTTCAGTCA
TGGTTAAACCCTGGAaaaccagggggggggtcaacatttataataccaac
ccatagcccaaaaacctgacttttgaccttttgagctaagttaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013933XLOC_013933Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024802-exon-sc0000510-1491911889:110683..111127TCONS_00024802-exon-sc0000510-1491911889:110683..111127Clytia hemisphaericaexon
TCONS_00024802-exon-sc0000510-1510915933:110683..111127TCONS_00024802-exon-sc0000510-1510915933:110683..111127Clytia hemisphaericaexon
TCONS_00024802-exon-sc0000510-1575043694:110683..111127TCONS_00024802-exon-sc0000510-1575043694:110683..111127Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000510supercontigsc0000510:110683..111127 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.452721	0.602952	2.4842	2.10244	0.846136	1.40023	4.24728	2.23371	2.43783	1.85988	3.1644	0.31018	0.438161	0.615817	0.184393	1.30849	0.118887	0	0.172304	0.305326	1.1339	0	0.158409	0.670401	0.449266	0	0.460421	0.178828	0.179148
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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