TCONS_00024856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024856
Unique NameTCONS_00024856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024856 ID=TCONS_00024856|Name=TCONS_00024856|organism=Clytia hemisphaerica|type=transcript|length=1401bp
CGTGTATGGAGCAATCAAGACGAGTGTCTCAAACACAACAGTTGGTAGCA
CTCAATATATTGTTAAGAAAACAATGTTCAAGAAATATCCTAACTTGATG
CCAGCATCGACAGCAAACAATTAtcaaagtattaatcaagagatTACAAA
CGCAACTACAAAaaagtgcGGCACATTTTGTTATCAGGAAAACGATTGCT
GGAGTTTTTTATTCTTCCGTTCCAAAACTCCACCCACGTGCACACTTCTT
GATGGTCCAATCGATCGAACACATATGGACCAGAACACAACTGTGGACTA
TTACGAAGTTTGGAATCAATGTTCATCGAACGACAGCATTTGTAATTTGG
GTGTATGCGTTCCAAATTACGTCACCGATTCGTACACTTGTCACTGCCCG
TCTACCTACACCGGTCAACATTGCCAAACATTAATTTCCATCccagAATA
CAAATGCACCGAAAATCCAAAAGTCATTGGTTCTTACCAAGCAGGGACAA
CCAGTTGGAAAATAGAAGTTGAACTCACATTCAAAGTTATTGTGTCGCAT
GGCAccttctttgaaattcaatataaCAATCAACAACATAAACTATTTGC
ATTGCAGTTAAGAACAGCCTATAACAAGTTAGTGATTACCGACTTTACAG
CAAATATTGACGGAACAGCGCGCAGTAATATCCAAGCCACTAACTCTAAC
AGGTATTCTCCAGCTCCAGACACATTCAGCAAACTGCTCTTCACCTTTGT
ACCAAGTTTAGATCAAGAGTTAAAGTCTAGTCTACACTATGAATTAAAAG
ATGGTGAAGGAGAAACACTTGGAACAGGTACAATCGACATCGATATATAT
GGAAGTTTAGGAGAGATCACCTTGCATAATGGCAGCGATTATGATGCAGA
AAAGGGGAAAAACCACGAGGAATCTGGTTTTGGCGCGAAAATCTGGACTC
GTGGGATCAAAGCTGCATAGTGCAGTGTAGTTGCAACTGAACATTAGTTG
ACGATATAAAtgctttaatttttgttttaatcgaGCTGATTCATTTAGTG
ACCCGGTAAGAAGTTTTCAAACAAGCTGTGATAGCATGAATGAACTAAAT
TGAGAAATTGAGAAACATTTCGAAACTAAGAACGTTACATATCCACTGAA
AGATTCTTCAATGAAGAACGATCTTTCGATtgttgaaaagaggaaaatgt
tttttcgtTTAATATGTCAATGGTTtatacaagcaaaaaaaagttttagt
acagtgaaaaaaaacattcgtctcaccatgaacatataaacgactggaca
tttatcttttattgtctctttgaagcgagcttcgttgccgcctgtatttc
caaattggtatgaaaaatccgacaatattccgtcataattttatttcttt
g
Run BLAST on NCBI

transcript from alignment at sc0000512:70871..75199+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024856 ID=TCONS_00024856|Name=TCONS_00024856|organism=Clytia hemisphaerica|type=transcript|length=4329bp|location=Sequence derived from alignment at sc0000512:70871..75199+ (Clytia hemisphaerica)
CGTGTATGGAGCAATCAAGACGAGTGTCTCAAACACAACAGTTGGTAGCA
CTCAATATATTGTTAAGAAAACAATGTTCAAGAAATATCCTAACTTGATG
CCAGCATCGACAGCAAACAATTAtcaaagtattaatcaagagatTACAAA
CGCAACTACAAAGTAAGAGTTttacattttcaagatttttaacaaacttt
gaacacgagaaaaaagaaaaacaagtgatacttttatggacctacctggt
tatgcatttaacacatatataattgatatctaagtgagcatgaacgttaa
acaatcaatcagaacacaaatagtgacgatttattaaaattagtcgtttg
tttcttataaaaaaaaacgtttagaaaccaaaatttcatgctcttgaaaN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNt
tatagataaagatgcgttttttgagctgaaaagtttttttacaaaaatct
gcttgacccatcttttacctactttcatgcaaaaaatcagaaaaaacaac
gaCGTTCCAATAATTCACaatgtccaaaaaaccctttttttagccgtttt
ttggcccaaatttgcccaaaaacattttttttcgaaaatcgggctcagtc
acattcgagggtttatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNcaaatcataaagaatgaaagagctaatctcga
gaaaagctaatacctaaataattgataatgtgcttataaaaaaatatcga
atttggccagtttttctataaaaacacgccaagcaaccaaaatttcatgt
ctaaacacacatatggTTCAAAattaagccctcgtgagcaaaaaaacatc
tatctcataaaaaaaattgagtaatttgactaagaacattaatgtatgct
tattaatagtgattcttatagataaacatgcgttttttgagccaacaaat
tttttttgaaaaagtctctctgagccatcttttacctatgatggtaccct
acttccatgcaaaaaatcagaaaaaatcaatgatccaatttttcacaaag
tccaaaaaacccgcttttagccgttttttggcccaaatttgcccaaaagc
atttttctttctcgaaaattgggctgcgtcacattcgagggtttatagtt
atgcatctttgtgcaaaaagtcttaaagaatgaaagagccaatctcgaga
aaagctaatacctaagtaattgaNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgagcaaa
aaaacatctatctcataaagaaattgagtaatttgactaagaacattgat
gtatgcttattaatagtgattcttatagataaacctgcgttttttaagcc
aaataattttttttgcaaaaatctgcttgagccatcttttacctatgatg
gtgccctactttcatgcaaaaaatcagaaaaaattaatgatccaattttt
cagtccaaaatacccgttttttagccgttttttggcccaaatttgccaaa
aaattttttttcgaaaatcgggctccgtcacattttggccaccaccgttt
tgcacctttgtaccaaaaatcaaatgattcctatgattcaatctcgaGAA
AAGCTGGTAACGAACGGACAGACGGACGGACGAACGGACAGAGGTGAATT
Ttataggacctccaccccaccggggtaggtccaaaaaagttttaaaaaaa
ggaAGTTAAAGagtttaaagatattctttgttatgatatagaaaggaggc
gcgcctctatgctgacaaagcaatataaataatagaatttctcaaaattt
gtacTCGTACGGATAGGGGGGAttgttaaggccggtctccacttgcgcgc
gttttgatcgcactttttcgagcaaagcttccacgctattggtcaaaaga
aaaatgtagcaactccattggcgtgaactgacgtaacggttgaaaaaact
tttttttcgagcgcgcgctgcattttaatgacgtaatctttttcccaaga
aaaaaggattgaagcaaAAAGTTCGATCGTAGCGAtcacaagtggagacc
ggcctttataaagttttttttataattttcagaaagtgcGGCACATTTTG
TTATCAGGAAAACGATTGCTGGAGTTTTTTATTCTTCCGTTCCAAAACTC
CACCCACGTGCACACTTCTTGATGGTCCAATCGATCGAACACATATGGAC
CAGAACACAACTGTGGACTATTACGAAGTTTGGGTAAGATCAATTTAGAC
AGCCAGCGNAAACACAACTGTGGACTATTATGAAGTTTGGGTAGGataaa
gatttattttcaaacacTCCTTATTTTGTCACTCATTCGACTTTAATAGT
TTAACTTAGCTTCGGTAGTTTTCAATTATTGCAAGTCCTAATTTTAGCAA
TAGTGAGAAACTCGTCACCAgatcccaaaaaaaaaaaaatctttgaaaat
ggagaaaatattcACTCATGGAAAAAGTGTCAAAACTCAACTGAAATGAA
TTGTGTTTGTGATCAAATTAATTCGTAAAATCTTCTCATCACGTTTTCAG
AATCAATGTTCATCGAACGACAGCATTTGTAATTTGGGTGTATGCGTTCC
AAATTACGTCACCGATTCGTACACTTGTCACTGCCCGTCTACCTACACCG
GTCAACATTGCCAAACATTAATTTCCATCccaggtaaaaaaaaaatacaa
tttaaaaaaactccatTTTTCGTATTGTTCATCATTTATTTGACTTGTtc
tatattttatttcttatgtAAATTTTGGACAAGATTCGATAATTTTAGAA
GTTAAAACcaatcaaaacattaaaaatctacttgtttagcttttttttaa
ataacaattTTTGTTCATCTACAGAATACAAATGCACCGAAAATCCAAAA
GTCATTGGTTCTTACCAAGCAGGGACAACCAGTTGGAAAATAGAAGTTGA
ACTCACATTCAAAGTTATTGTGTCGCATGGCAccttctttgaaattcaat
ataaCAATCAACAACATAAACTATTTGCATTGCAGTTAAGAACAGCCTAT
AACAAGTTAGTGATTACCGACTTTACAGCAAATATTGACGGAACAGCGCG
CAGTAATATCCAAGCCACTAACTCTAACAGGTATTCTCCAGCTCCAGACA
CATTCAGCAAACTGCTCTTCACCTTTGTACCAAGTTTAGATCAAGAGTTA
AAGTCTAGTCTACACTATGAATTAAAAGATGGTGAAGGAGAAACACTTGG
AACAGGTACAATCGACATCGATATATATGGAAGTTTAGGAGAGATCACCT
TGCATAATGGCAGCGATTATGATGCAGAAAAGGGGAAAAACCACGAGGAA
TCTGGTTTTGGCGCGAAAATCTGGACTCGTGGGATCAAAGCTGCATAGTG
CAGTGTAGTTGCAACTGAACATTAGTTGACGATATAAAtgctttaatttt
tgttttaatcgaGCTGATTCATTTAGTGACCCGGTAAGAAGTTTTCAAAC
AAGCTGTGATAGCATGAATGAACTAAATTGAGAAATTGAGAAACATTTCG
AAACTAAGAACGTTACATATCCACTGAAAGATTCTTCAATGAAGAACGAT
CTTTCGATtgttgaaaagaggaaaatgttttttcgtTTAATATGTCAATG
GTTtatacaagcaaaaaaaagttttagtacagtgaaaaaaaacattcgtc
tcaccatgaacatataaacgactggacatttatcttttattgtctctttg
aagcgagcttcgttgccgcctgtatttccaaattggtatgaaaaatccga
caatattccgtcataattttatttctttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013977XLOC_013977Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024856-exon-sc0000512-1491911889:70871..71032TCONS_00024856-exon-sc0000512-1491911889:70871..71032Clytia hemisphaericaexon
TCONS_00024856-exon-sc0000512-1510915933:70871..71032TCONS_00024856-exon-sc0000512-1510915933:70871..71032Clytia hemisphaericaexon
TCONS_00024856-exon-sc0000512-1575043694:70871..71032TCONS_00024856-exon-sc0000512-1575043694:70871..71032Clytia hemisphaericaexon
TCONS_00024856-exon-sc0000512-1491911889:73453..73603TCONS_00024856-exon-sc0000512-1491911889:73453..73603Clytia hemisphaericaexon
TCONS_00024856-exon-sc0000512-1510915933:73453..73603TCONS_00024856-exon-sc0000512-1510915933:73453..73603Clytia hemisphaericaexon
TCONS_00024856-exon-sc0000512-1575043694:73453..73603TCONS_00024856-exon-sc0000512-1575043694:73453..73603Clytia hemisphaericaexon
TCONS_00024856-exon-sc0000512-1491911889:73921..74053TCONS_00024856-exon-sc0000512-1491911889:73921..74053Clytia hemisphaericaexon
TCONS_00024856-exon-sc0000512-1510915933:73921..74053TCONS_00024856-exon-sc0000512-1510915933:73921..74053Clytia hemisphaericaexon
TCONS_00024856-exon-sc0000512-1575043694:73921..74053TCONS_00024856-exon-sc0000512-1575043694:73921..74053Clytia hemisphaericaexon
TCONS_00024856-exon-sc0000512-1491911889:74245..75199TCONS_00024856-exon-sc0000512-1491911889:74245..75199Clytia hemisphaericaexon
TCONS_00024856-exon-sc0000512-1510915933:74245..75199TCONS_00024856-exon-sc0000512-1510915933:74245..75199Clytia hemisphaericaexon
TCONS_00024856-exon-sc0000512-1575043694:74245..75199TCONS_00024856-exon-sc0000512-1575043694:74245..75199Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000512supercontigsc0000512:70871..75199 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.10128	0.749062	1.6554	0.961078	0.170262	0	0.408686	0.859399	0.967927	1.13174e-07	0.383131	0.954536	3.1617	0.838593	0.582042	0.056547	1.531	0.521888	0.0953002	1.94539	0.470925	0.384302	0.811431	1.05689	0.761351	0	0	0.225873	0.722426	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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