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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025033 ID=TCONS_00025033|Name=TCONS_00025033|organism=Clytia hemisphaerica|type=transcript|length=2809bpRun BLAST on NCBI transcript from alignment at sc0000517:86424..118305+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025033 ID=TCONS_00025033|Name=TCONS_00025033|organism=Clytia hemisphaerica|type=transcript|length=31882bp|location=Sequence derived from alignment at sc0000517:86424..118305+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00025033 vs. Swiss-Prot (Human)
Match: ANKR6 (Ankyrin repeat domain-containing protein 6 OS=Homo sapiens GN=ANKRD6 PE=2 SV=3) HSP 1 Score: 120.553 bits (301), Expect = 7.183e-28 Identity = 74/228 (32.46%), Postives = 126/228 (55.26%), Query Frame = 1
Query: 163 MDDSDDTLKLHRDLIIACGWGKEVDVILLLQQGASVRVQDQDGKNCLHYAACKGHIQVTNLLIENGCNINARDKEGNTPCHVACLNDYFEVVELLIHVKADLNIKNKDAFTPLHIATLNHHTKSMVLLMKAGVNKSAQDANGNTALHMAIQTKSYKALKCLLKHGADVNIQNHGGNTPLHLSAELGNAQYVDYLLSVDQPIELSPNNVGDTAKDIAIRNGFKEIAQMI 846
M D L L++A G+ +V+ L+ +GA V V + G+ LH AA KGH+ V +L++ GC+++ +D T H A + E++ LIH L+ ++KD T LH A+ + ++S LL+KAG N A++ GNTALH+A Q ++ + LL G+ +++N+ G+T LH++A + + LL+ + N GDTA +A K++A+++
Sbjct: 1 MSQQDAVAALSERLLVAAYKGQTENVVQLINKGARVAV-TKHGRTPLHLAANKGHLPVVQILLKAGCDLDVQDDGDQTALHRATVVGNTEIIAALIHEGCALDRQDKDGNTALHEASWHGFSQSAKLLIKAGANVLAKNKAGNTALHLACQNSHSQSTRVLLLAGSRADLKNNAGDTCLHVAARYNHLSIIRLLLTAFCSVH-EKNQAGDTALHVAAALNHKKVAKIL 226 HSP 2 Score: 105.531 bits (262), Expect = 4.344e-23 Identity = 67/203 (33.00%), Postives = 102/203 (50.25%), Query Frame = 1
Query: 166 DDSDDTLKLHRDLIIACGWGKEVDVILLLQQGASVRVQDQDGKNCLHYAACKGHIQVTNLLIENGCNINARDKEGNTPCHVACLNDYFEVVELLIHVKADLNIKNKDAFTPLHIATLNHHTKSMVLLMKAGVNKSAQDANGNTALHMAIQTKSYKALKCLLKHGADVNIQNHGGNTPLHLSAELGNAQYVDYLLSVDQPIELS 774
DD D T LHR ++ G + L+ +G ++ QD+DG LH A+ G Q LLI+ G N+ A++K GNT H+AC N + + +L+ + ++KN T LH+A +H + LL+ A + ++ G+TALH+A K K LL+ GAD I N+ G TPL + N + L Q + S
Sbjct: 72 DDGDQTA-LHRATVV----GNTEIIAALIHEGCALDRQDKDGNTALHEASWHGFSQSAKLLIKAGANVLAKNKAGNTALHLACQNSHSQSTRVLLLAGSRADLKNNAGDTCLHVAARYNHLSIIRLLLTAFCSVHEKNQAGDTALHVAAALNHKKVAKILLEAGADTTIVNNAGQTPLETARYHNNPEVALLLTKAPQVLRFS 269 HSP 3 Score: 100.523 bits (249), Expect = 1.478e-21 Identity = 63/203 (31.03%), Postives = 105/203 (51.72%), Query Frame = 1
Query: 238 VILLLQQGASVRVQDQDGKNCLHYAACKGHIQVTNLLIENGCNINARDKEGNTPCHVACLNDYFEVVELLIHVKADLNIKNKDAFTPLHIATLNHHTKSMVLLMKAGVNKSAQDANGNTALHMAIQTKSYKALKCLLKHGADVNIQNHGGNTPLHLSAELGNAQYVDYLLSVDQPIELSPNNVGDTAKDIAIRNGFKEIAQMI 846
V +LL+ G + VQD + LH A G+ ++ LI GC ++ +DK+GNT H A + + + +LLI A++ KNK T LH+A N H++S +L+ AG ++ G+T LH+A + ++ LL V+ +N G+T LH++A L + + LL + NN G T + A + E+A ++
Sbjct: 58 VQILLKAGCDLDVQDDGDQTALHRATVVGNTEIIAALIHEGCALDRQDKDGNTALHEASWHGFSQSAKLLIKAGANVLAKNKAGNTALHLACQNSHSQSTRVLLLAGSRADLKNNAGDTCLHVAARYNHLSIIRLLLTAFCSVHEKNQAGDTALHVAAALNHKKVAKILLEAGADTTIV-NNAGQTPLETARYHNNPEVALLL 259 The following BLAST results are available for this feature:
BLAST of TCONS_00025033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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