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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025927 ID=TCONS_00025927|Name=TCONS_00025927|organism=Clytia hemisphaerica|type=transcript|length=1155bpRun BLAST on NCBI transcript from alignment at sc0000555:125619..159335+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025927 ID=TCONS_00025927|Name=TCONS_00025927|organism=Clytia hemisphaerica|type=transcript|length=33717bp|location=Sequence derived from alignment at sc0000555:125619..159335+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00025927 vs. Swiss-Prot (Human)
Match: GLRA3 (Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=1 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 5.246e-38 Identity = 77/235 (32.77%), Postives = 127/235 (54.04%), Query Frame = 1
Query: 199 TSYDKRVKPFGRNGTLDLEVQISVVAVGPINEKDFTFRLDYYLRQWWVDERLVFPEKGKITFGGNPK--DLIWLPDLFVRNSKEVKMHQSFQQSIRTTINHDGNVYMSARVSAICSCNMNLQNYPMDHQTCALSMESYAYQGNELNISWH-QAPIEYKPENIQVEGYKLT-SIDASSDVTNYMTGEFFQLLHIYLHVERTVSYYIFRSYVPSSFLVIMTWGTFWLPVNTYPARVG 891
+ YD R++P + +++ I + + G I E +R++ +LRQ W D RL + E + +P D IW PDLF N K H+ + I +GNV S R++ SC M+L+N+PMD QTC + +ES+ Y N+L W +AP++ E + + + L D +Y TG+ F + + H+ER + YY+ + Y+PS +VI++W +FW+ ++ PARV
Sbjct: 55 SGYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVA-EGLTLPQFLLKEEKDLRYCTKHYNTGK-FTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVA 287 The following BLAST results are available for this feature:
BLAST of TCONS_00025927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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