TCONS_00025972 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025972
Unique NameTCONS_00025972
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025972 ID=TCONS_00025972|Name=TCONS_00025972|organism=Clytia hemisphaerica|type=transcript|length=593bp
ataaagaaaaatttaaatggaGTCCTGTGGTTGTCTTTCTTCCATTGCAA
GGAGCTTATGTGGAACTAAAAGcacTCAAAGGGCCAGATACAATGAACAA
GAATACACGATAGAGGTTTGTATGTACATAGAgaatttttttgcaatatt
ttagtTATCGCTTTTTGAAATAGAAGTAATGGATCTACCCTTCTTTAGCA
AAATATGGGATGGCCTGGACCCTTTGTGTTTGATAATGATTGTTTCCAAG
TTATTGTCTTATGCATGCATGTTTTTCTTCAATACCCAGCAATACCATCT
GGAAACCACTTTCAAGAGATTTGTCTTATAATGCTGACATAATGGTTTTC
CACATTGCAGCAAAAAACAAGTGCACACTTTTAAGCAACTTTAGTTAACT
TTTCCAGAAGTATTATGGCACTCAGATATTGCATAAATGAGATAAAACTG
TACTGTAAAGCTGTACCTGTAAGCTCAGGGGTTGAAAATAtagttttcat
tttgaaaacaatGATAAACTGGAACACCAACATTGTCTTGTCGTATCTAA
CTATtcttaaatatttatttttagtttgaaaacttgattgaag
Run BLAST on NCBI

transcript from alignment at sc0000556:117499..119238-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025972 ID=TCONS_00025972|Name=TCONS_00025972|organism=Clytia hemisphaerica|type=transcript|length=1740bp|location=Sequence derived from alignment at sc0000556:117499..119238- (Clytia hemisphaerica)
ATAAAGAAAAATTTAAATGGAGTCCTGTGGTTGTCTTTCTTCCATTGCAA
GGAGCTTATGTGGAACTAAAAGGTCAGTACCAATATTATTAACTAAATTG
TTTCCAACTTTTCCGGCACTATGGAGTAATTATATAAATAAATCAAATTT
TTGAGAGAATCAAAGTATTGAAATATCAACTTTATTTTTCAATGACTTAC
TTTTGATTATTTTTTTTTTTGAAAATTAGGGGAAGAAATTTTGGCAGGAA
TTTAGTTTGGCAGAGGGTTATTTTCAGATGGAATATATAATTGGGCAGAA
TTTGAAGTTTTTGCAAAAAAGATATTTTTGGCCAAAAAAGTATTTTAATA
AAAAAATCTTTTGAATTTCTGGAATCTAGCAGATATTTGAGGAATGAATA
CAATGATTTAACATAGTTCGGACCCACCCCCCTTTCTTAAGGGGGATGAC
ACCTTCCAAAAAAGTGAAGAAAGGGGATCAGAAATTTTCATTAAAAAGGG
GGGGGGGTAGCAAGGAGGGGGGGTCGTTTAAGAAGGCGGGGTCGTTTAAG
AAGGCAGGGCCGTTTAAGAAGGGAGGGGGCTTACAAATATTGTAGATTAT
TTTCCAGCACTGTTATGAAATTTGGTCTGCATGGAAGGAAGTTCTTTATT
TTCACTAAAAAGTTGTATTATATTTGCCAGACTTAATTTTTCTGTACTGT
TTCCTTTCCCTTATTTATTTTACCATAAAAAATTTAGCCCAAAACCCTTG
GGGGATAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGG
GGGGGGGGGGGTGCCAAGAAGGGGGGATCATTTAAGAAGGGGGGATCAGA
CCCCTTTCCGCACTATGTTTAAATTTGGTAGAAATTTAATTGATTAGCTG
ATTTTGGCCAAATCCAGCAAAACCTAGCGCCTAATTTTAATTCCTCCAAA
ACTTCTTCCCTTAAGGTAAAGGGCACTTCTTCTACATTTTCTATAATATT
AAATCATATAGCTAAATTTCTAATTTTTTTAATAGTCAGTTTGAAAATTT
CTATTGTTTATTTTTAAAGGGGATAGGATTAAAATTTAAAAATTTGTAAT
TCTTTTTTTTTAATTTTAGCACTCAAAGGGCCAGATACAATGAACAAGAA
TACACGATAGAGGTTTGTATGTACATAGAGAATTTTTTTGCAATATTTTA
GTTATCGCTTTTTGAAATAGAAGTAATGGATCTACCCTTCTTTAGCAAAA
TATGGGATGGCCTGGACCCTTTGTGTTTGATAATGATTGTTTCCAAGTTA
TTGTCTTATGCATGCATGTTTTTCTTCAATACCCAGCAATACCATCTGGA
AACCACTTTCAAGAGATTTGTCTTATAATGCTGACATAATGGTTTTCCAC
ATTGCAGCAAAAAACAAGTGCACACTTTTAAGCAACTTTAGTTAACTTTT
CCAGAAGTATTATGGCACTCAGATATTGCATAAATGAGATAAAACTGTAC
TGTAAAGCTGTACCTGTAAGCTCAGGGGTTGAAAATATAGTTTTCATTTT
GAAAACAATGATAAACTGGAACACCAACATTGTCTTGTCGTATCTAACTA
TTCTTAAATATTTATTTTTAGTTTGAAAACTTGATTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014609XLOC_014609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025972-exon-sc0000556-1575043694:119167..119238TCONS_00025972-exon-sc0000556-1575043694:119167..119238Clytia hemisphaericaexon
TCONS_00025972-exon-sc0000556-1575043694:117499..118019TCONS_00025972-exon-sc0000556-1575043694:117499..118019Clytia hemisphaericaexon
TCONS_00025972-exon-sc0000556-1510915933:119167..119238TCONS_00025972-exon-sc0000556-1510915933:119167..119238Clytia hemisphaericaexon
TCONS_00025972-exon-sc0000556-1510915933:117499..118019TCONS_00025972-exon-sc0000556-1510915933:117499..118019Clytia hemisphaericaexon
TCONS_00025972-exon-sc0000556-1491911889:119167..119238TCONS_00025972-exon-sc0000556-1491911889:119167..119238Clytia hemisphaericaexon
TCONS_00025972-exon-sc0000556-1491911889:117499..118019TCONS_00025972-exon-sc0000556-1491911889:117499..118019Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000556supercontigsc0000556:117499..119238 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.56738	0.720905	0.313826	0.566243	0.996744	0.790862	0.475127	1.22322	0.186725	0.232851	0.812784	0.150958	0.303799	0	0.40915	1.38063	0.0851535	0.447339	0.37878	0.569534	0.557356	0.199289	0.786872	0.139923	0.60226	0.804928	1.61925	0.350473	0.699254	0.296478
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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