TCONS_00025961 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025961
Unique NameTCONS_00025961
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025961 ID=TCONS_00025961|Name=TCONS_00025961|organism=Clytia hemisphaerica|type=transcript|length=1509bp
TTGCGttctttcaaaattgaaatctgtATTATAATAGACCCCTGGCGCCA
GCTTTTCCGAGTCACAGCAACTGCTTTTGATCTATTCAAaaccattttct
ttattttcgtgAATAAAATCTTAGATTCGGAAGATTCTGGATCCTTATAT
TTTGTCAATGATGTATTTTCTGAACTTAATTCAATCTCGATTTGAGCTCG
TTTCGGTTTCAGGGTAGAATCAAAATCGGTCACAATGATGTTATGTGAAT
ATCCACTTGTCGAGAATTTTTTTGCGAAttcctttaattctctcttcatG
CTTTCTGCTTCCGAACAATCTAAATGAAAGCCTTCTTTACCAGGGCAGGG
AAATGTTGCCTCCATCCTGACAGCCAATTTGTTAGACATTGTTTTAAGTG
TTTGgctcatttttttaaattcatctaataatttatttattttctgcCCA
CAGTCATTTTGACTCTTAAACTCCTGATCGGTAGAGAggaatttttcaat
cttttgagTTGACAAGGGTATAACAAATGGTGGAGTTAAAACGTCGATTA
AGATATCGACATTCTCGTTGACTTTATCTAAAGTGATACAACCCTTTTCC
TTTAAATAGTTCAAAGAAAATTTCAGAGCATATGATATAGTTTCTGTAAT
ATCTTTCCACGACTTGAAAAACGGATCCTTTGTATATTTCGCAGTTTTGA
TTTCCTGACACTTTTTGGGTGTCAAGTGCATGGTTagatttcttaatatt
ttcatAGTAAATACGCACATGCGTAATTTTTGCGATGGGCAAATGTTAAT
TAGGTCTTTCTGTGATGAACTGANGTTTTTGTTTGCGATTTGGGGCGTTG
ATTTACTACCATGGTTAATTTTTTCGAATGGGTTATCACATTGTTTAAGT
TTTTGAAACAAATCCCTCCAACTTGCAGATTGAGTGTTTTTCACTACACA
GTTTAAACAATGTTCACACAAATCTTCTTCACAGCAAACGTACTGATTAT
CCTTACAATTTTGCCATGTAGTTTTACAATGCATGcaagtttttttatct
tttttatgttCCTGATTAGAACGATCACAATCTTTACAACATCCCTTATG
TTTTACTTGTCCATTTAGGCTATTGCTGTTATTTGTACAATGCTTTACCT
TAGCTTGAGGATGAAGGACTGAAAAATCACTTTTGTTGAGTTGCTTCATC
AGCTCAGTTATGTCGAGTTCCTCTAAGACTACACTGGCTCCTGCTGCAGA
ATTTTTGTTGACTTTTCGTAGTAGCTCTTGCAACACATATCGACTGACCC
AACTAACAACGACGAGTTGAAGTTGGTATTGCAAGGGGTTCGTATTGTTT
TCAGAATGGATCGTATTATTTCCATTAAGGTTTGTATCATTTAACGCTGT
TGGATTCACGTGTCCTACGTCATTATTTATTGGAGAATCTCCACTTGATT
GAACCGGTTCATCTGAAGTTATTACTTCTTTAGATTTAGTATTCTCCATG
AATTCTGGT
Run BLAST on NCBI

transcript from alignment at sc0000556:169451..171087+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025961 ID=TCONS_00025961|Name=TCONS_00025961|organism=Clytia hemisphaerica|type=transcript|length=1637bp|location=Sequence derived from alignment at sc0000556:169451..171087+ (Clytia hemisphaerica)
TTGCGttctttcaaaattgaaatctgtATTATAATAGACCCCTGGCGCCA
GCTTTTCCGAGTCACAGCAACTGCTTTTGATCTATTCAAaaccattttct
ttattttcgtgAATAAAATCTTAGATTCGGAAGATTCTGGATCCTTATAT
TTTGTCAATGATGTATTTTCTGAACTTAATTCAATCTCGATTTGAGCTCG
TTTCGGTTTCAGGGTAGAATCAAAATCGGTCACAATGATGTTATGTGAAT
ATCCACTTGTCGAGAATTTTTTTGCGAAttcctttaattctctcttcatG
CTTTCTGCTTCCGAACAATCTAAATGAAAGCCTTCTTTACCAGGGCAGGG
AAATGTTGCCTCCATCCTGACAGCCAATTTGTTAGACATTGTTTTAAGTG
TTTGgctcatttttttaaattcatctaataatttatttattttctgcCCA
CAGTCATTTTGACTCTTAAACTCCTGATCGGTAGAGAggaatttttcaat
cttttgagTTGACAAGGGTATAACAAATGGTGGAGTTAAAACGTCGATTA
AGATATCGACATTCTCGTTGACTTTATCTAAAGTGATACAACCCTTTTCC
TTTAAATAGTTCAAAGAAAATTTCAGAGCATATGATATAGTTTCTGTAAT
ATCTTTCCACGACTTGAAAAACGGATCCTTTGTATATTTCGCAGTTTTGA
TTTCCTGACACTTTTTGGGTGTCAAGTGCATGGTTagatttcttaatatt
ttcatAGTAAATACGCACATGCGTAATTTTTGCGATGGGCAAATGTTAAT
TAGGTCTTTCTGTGATGAACTGAGTTTGCTGTTTGTGATTTGGGGCGTTG
ATTTACTACCATGGTTAATCTTTTCGAATGGGTCATCGCAtcttttaagt
ttttgaaacaAATCCCTCCAACTTGCAGATTGAGTGTTTTTCACTACACA
GNGTTTTTGTTTGCGATTTGGGGCGTTGATTTACTACCATGGTTAATTTT
TTCGAATGGGTTATCACATTGTTTAAGTTTTTGAAACAAATCCCTCCAAC
TTGCAGATTGAGTGTTTTTCACTACACAGTTTAAACAATGTTCACACAAA
TCTTCTTCACAGCAAACGTACTGATTATCCTTACAATTTTGCCATGTAGT
TTTACAATGCATGcaagtttttttatcttttttatgttCCTGATTAGAAC
GATCACAATCTTTACAACATCCCTTATGTTTTACTTGTCCATTTAGGCTA
TTGCTGTTATTTGTACAATGCTTTACCTTAGCTTGAGGATGAAGGACTGA
AAAATCACTTTTGTTGAGTTGCTTCATCAGCTCAGTTATGTCGAGTTCCT
CTAAGACTACACTGGCTCCTGCTGCAGAATTTTTGTTGACTTTTCGTAGT
AGCTCTTGCAACACATATCGACTGACCCAACTAACAACGACGAGTTGAAG
TTGGTATTGCAAGGGGTTCGTATTGTTTTCAGAATGGATCGTATTATTTC
CATTAAGGTTTGTATCATTTAACGCTGTTGGATTCACGTGTCCTACGTCA
TTATTTATTGGAGAATCTCCACTTGATTGAACCGGTTCATCTGAAGTTAT
TACTTCTTTAGATTTAGTATTCTCCATGAATTCTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014604XLOC_014604Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025961-exon-sc0000556-1491911889:169451..170273TCONS_00025961-exon-sc0000556-1491911889:169451..170273Clytia hemisphaericaexon
TCONS_00025961-exon-sc0000556-1510915933:169451..170273TCONS_00025961-exon-sc0000556-1510915933:169451..170273Clytia hemisphaericaexon
TCONS_00025961-exon-sc0000556-1575043694:169451..170273TCONS_00025961-exon-sc0000556-1575043694:169451..170273Clytia hemisphaericaexon
TCONS_00025961-exon-sc0000556-1491911889:170402..171087TCONS_00025961-exon-sc0000556-1491911889:170402..171087Clytia hemisphaericaexon
TCONS_00025961-exon-sc0000556-1510915933:170402..171087TCONS_00025961-exon-sc0000556-1510915933:170402..171087Clytia hemisphaericaexon
TCONS_00025961-exon-sc0000556-1575043694:170402..171087TCONS_00025961-exon-sc0000556-1575043694:170402..171087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000556supercontigsc0000556:169451..171087 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0154499	0	0.110409	0.0290821	0.0526295	0	0.114986	0.0854574	0.0138245	0.0404243	0.67244	0.577432	0	0	0	0.14001	0.796262	0.922928	0.139818	0.231664	0	0	0.679776	1.18128	0.347425	0	0	0.0308611
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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