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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026278 ID=TCONS_00026278|Name=TCONS_00026278|organism=Clytia hemisphaerica|type=transcript|length=2872bp
ATTTTTGGGACAACTTTGAAACTCaatctgaaaatgaaattaacgATGAC
CGAGTCGACCAAAACAACAATTTGCTCGATGTCCCGGACAAAGTCGTCAG
TCAGTTGTTACGTAAACAAGACCACGAATTAGAGAATTACGACGCAAAAG
ATGACTTGCGGGATAACAAAGAAGTCAAACTTCCAGAAAATTCATCAATG
GTCGACGAGCACCGACTCGTTGATGGCGAAATGAAGGATGAACTTCATGA
AAAATCTTTTGGTGTAGATGATATGTGGAGTGAATGCGATACCACTGTCG
TGGAAAACAAACTATTCGATACCAATGAATTGGAAGGAGAAGACCAACGC
CCTGCCTCAAATAACGTCATCAGTCCACAGATTGAGGCACCAAGTGTTGA
TCTCCTAAAATCTCCTCCCTCAAGTACTTTATCAACTGAACGATCTATCT
CTCCTAATCGtgaccaaaaaaaattacgaaGGAGGAGTGCAAAAATCCGC
GAAGAAAGCCATGAGAAGGAGATCGATTGGAGCCAATTCGAATCTCAAAC
CGACCAATCAGAAGACGCTACAGTTGatattagccaatcagattccgAGC
ATAATGAAAACATCCGATCAGAGGTCACCACAGAGAGTGAGGACAATGGA
GAAAGTGCTGTCGAGGAGCTTGAAAGATTTGACGATAACATCTTTAAGCG
TAATCAGAAATCAGagattttaaaaatcaattctGTAGATGGTCAACATG
GCTTGATAATAACGAAAAGTGTTCGACGAAAGGCTTCACATAAAGATCGA
TTCAGTTTTGAATACTCAGATGATGATTGCTACGAATCGAACGTTAAATC
ACCGATCGAAATTCCCGACAATGAACCGACTAAGAACGAGAATGAGTTTA
TAAACGACTTtaaagaatttgaaaacaacactcaaaatgttttaaaagaa
tttcaagACGATAAAACACCGACAAATCTACCGACTGCTACTGacgattt
attttttttcgggaAAACGGACGACAACTTACGACAACACTCGGCTCGTT
CTCGTGAAAGTGGCCGGTATTCGGCTGCAAGTTCGGAGCTTTACGAAAGC
GAAAACGATTATGGGTCAACGCTGAGACTAAatgttgaaaatgaagaaaa
taacaGAGTCCGCAGGAAACCATCCATCAAACGGTTGTtcaaaaagaatc
aaaacaagGCCAAACAAAATGAGGACCAAAACAACGAAGACTTAAGCAAC
CTCTTACAGAATAAAGACAGTGTTTTCCAGAAGAAAAAACGTAGATTTTT
CCCattcatgaaaaagaagaaaagtggTACGGAGCAGATGAAAGAAGGAA
GTGAGGCTAGTGGTACTTGTTCAACGGCTAGTAGCTTAGATCTTAATGAA
GACTTACAATCTGATTCTCCGGCAGACCCCAAACAGTTAGAGACAGACAT
TATCACCATCGAAAGGTTACCTTTGATTACAGATATACATAACCAACAGC
AAAATAGCGGGAAAGAAGTGGTTAACATTACAGCTCCAAGCAATGCCAAT
CCCCCTAAAGAGAATACAATTGAAAATCTAACCTTACCAGAAACTTCAGA
ATCTAAAGCAGCAGTAACTAACCAACAAGTACCTGATGAACTCTCTCAAA
AATCTCTGCCAGTCAGTAACCCAGAGAAGGAACAACCTCCTCAGACAACA
AACCAAGCCAAGCAAGAATCCTCAAAGAAAGAGGACTTGATAACTAAACA
TTTGTTTACAAAGCTTGGACAGACTGTTGAAAATTTATCAAGTCAAGAAC
AGATTTTAGAAGTTGGCATCAAACTATTGCGTAAACTTGGTTGTTATTTT
ACAGAGGAAGATTTCGAAGCTCAGTTACGTAGTCCCGGTGAAGTTGAAGT
TGATCCGAATTTACCTAAAAAGTCGCAGTTTGTCTCCAAAAGAGTTTTGG
GTATTCTTAAAGATCATTGGATCTCTCTTggaaataaagaaatagagacT
GAACTCGTACCAAATCTAAACGAAGAACAGACTGAAACGACCAATGAAAT
TAAAGATCAACTTCAATTGTCCAATCAGAATGCAGATACAACTCAACAAT
ACATTCCGATTAAAAACGATCTaccaaaatcaaccaatcaagTATCAATT
CAACATCAACCAGCCAATCAAAACGACGAATCTTCAAAACCACTCAATGA
AAAGAACGAAGAACAAGTATCGTCCAATCACATTACTGAATCATATTTTA
CCTCGTCCAATGAAATAGCAGAACCAATTGAATCAACCAATGAGATGTCT
AATAAACGCCCGTCCACCAATGGTATGTTAGAACCCGAGAATCAAACCAG
CGCGCCTGATTTTCCAGAGGAATCGAGGATCCGTATTCAACGTAAAATTT
CCCTTAAGTCACAATCAAATGATTCGACAACCAATCACAGCGAAGAAATC
ACCCAATCCGCCAATGAAATCGAACCAACAAAAGAACCAGCCAATCAAAA
TCAAGACAATGTCCAAGCCACCAATGACATGCCTTCAACGATCGAACCAC
CAATCAAAATCACTGCAATAGACGAATTACCCAATCAAAATGAGCCTATC
AAAACAGAAACACCAATCAGGAAAGAATCCCTCCCAAGCCTCGTAATGGG
TTCTCAAAATGTAACCGTGAGCCACGATACTGAATTTGAGCACACAACGC
ACCAAGTTGGCTCCACAAACTATAAATCTGAGAAGAAAATACAACTCATC
AAATCTCTGTTGAGGAAAGCCGGGAAAGAAGAATCGGAGTATTTGAACTT
TGAAGAGAGaattcaagaaaaaatgaagatggatgaagaaaagaagaaaa
tgaaagctcAACAAGAAGAAGA Run BLAST on NCBI transcript from alignment at sc0000566:129982..136813+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026278 ID=TCONS_00026278|Name=TCONS_00026278|organism=Clytia hemisphaerica|type=transcript|length=6832bp|location=Sequence derived from alignment at sc0000566:129982..136813+ (Clytia hemisphaerica)
ATTTTTGGGACAACTTTGAAACTCaatctgaaaatgaaattaacgATGAC
CGAGTCGACCAAAACAACAATTTGCTCGATGTCCCGGACAAAGTCGTCAG
TCAGTTGTTACGTAAACAAGACCACGAATTAGAGAATTACGACGTAAGTC
TATTTAAAAAAGGTTATCACCACCCAAGTGGTGGAACCTCTTCGCAAGAA
GGTggaaattaactttaaaataCCCCCAAATATAACGTTTTAAAAACTAA
TAGGGAAACTCTTTCTCTTGACTTGATGAACATATTTTCGAGAGTTAATA
AGGGGGCCGAAAGAAATAAGAAAAGCAAGCGGGCGGGATGGGTATTTATT
AGCCACTTATGAGTAGCTGGAGAATTGAAATGTACGATCGACCTCAGTAG
CTCCCTGACTATTAGGTTATATTCTTTGGAATCTTTTTTATCGTAAGTCT
CTCTTGTTGCAAATTTAGtattggaatttttaaaaaatcttcttaatTTG
AAACACGTTTTAAACCTCTTTTAAGAGTAACTCGTAATCTTGTATCCGTT
TTTTTAGGCAAAAGATGACTTGCGGGATAACAAAGAAGTCAAACTTCCAG
ATAATTCATCAATAGTCGACGAGCACCGATTCGTTGATGGCGAAATGAAG
GATGAACTTCATGAAGTAATTACTGTTTTATGAGAGGGCCCAATTTTTAA
GCTCTCTGACCCGAGTGGGGGTCTCAAATGGAGTTCACATCTTCAGTTAT
ATAACAATTTTAGCTTCAAGTATTTGCCAAATATAGAATTTTGCGAAAGT
TGAGAGTAATGCTGAATTATTTGACCCGAACAAATCTAACTCATTCCCTT
CTAAGAATTTAGCGACCGTATTTNTAAGTGGCATATCAtccaaaatctat
tgtttcattttatactTTTAACGAGGGGGCAACGAAGCTATctgtgttat
cttcaaaaagacaaaggagatggatgtccaggcGTTTATGTGTTCATGAT
ACAAAGTAAACTGCTGAATGATTAGGAAAACATTAAGTCGTCTAAAATCT
CTAAATCGTCTAAAATGGTTGGGAATTTTATTCTGTCACATCTTGGCCAA
ATTTTAGATTGGAATCACCCCTTCCTTCTCCAAGAATGGGGTAAAATGTA
GGGAAAAATCATTATTTGAAGACAACCACAATttattaccgtgaaaagca
cagctcaaaatcatatatttacattgtgccgacgaatcgagattctattc
atcgcgcaatcagcgaagacaaaagtaaccatgacgaccatccaagatct
tggatgagcgtcatagtcgatatttttatNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGTAAGTCTA
TTTAAAAAAGGTTATCACCACCCAAGTGGTGGAACCTCTTCGCAAGAAGG
TggaaattaactttaaaataCCCCCAAATATAACGTTTTAAAAACTAATA
GGGAAACTCTTTCTCttgaccgtagtgcagtggtagagcatccggctacg
gttcgcaaggttgtgggttcaacccccagccaggTCATAcccaagatttc
caaaatggtacttgatgcctctctgcttgatgctcagcaattaagtgAAG
GATCAatggtaagtggagcaatccagggagaaagagtggcgccctcccct
accttcgggtagatagctatcgaaagaggagccttcgagtcgcctccgac
tgtggtcgcagacttacttactttctCTTGACTTGATGAACATATTTTCG
AGAGTTAATAAGCGGGCCGAAAGAAATAAGAAAAGCAAGTGGGCGGGAGG
GGTATTTATTAGCCACTTATGAGTAGTTGGAGAATTGAAATGTACGATCG
ACCTCAGTAGCTCCCAGACTATTaggttatattttttgaaatctttttta
tcGTAAGTCTCTCTTGTTGCAAATTTAGtattggaatttttaaaaaatct
tcttaatTTGAAACACGttttaaaccttttttaagAGTAACTCGTAATCT
TGTATCCGTTTTTTTAGGCAAAAGATGACTTGCGGGATAACAAAGAAGTC
AAACTTCCAGAAAATTCATCAATGGTCGACGAGCACCGACTCGTTGATGG
CGAAATGAAGGATGAACTTCATGAAGTAATTACTGTTTTATGAGAGGACC
CAATTTTGAAGCTCTCTGACCCGAGTGGGGGTCTCAAATGGAATCTTCAG
TTCTATAACAATTTTAGCTTCAAGTATTTGCCAAATATAGAATTTTGCGA
AAGTTGAGAGTAAGGCTGAATTATTTGACCCGGACAAATCTAACTCATTC
CCTTCTAAGAATTTAGCGACCGTAATTTTCGACCATAGTCGCACGGTCAG
GCGCATGCCACTTTATTGTTtcatttaccaccctaaactcgatccaatcc
ttttttacacttttttatattgTCGAagaaaagactgggacggttttatg
gtaaaatggacaaaagaaTGCCCGCGTGGTagttggcggctacggtcgaa
ataGTGTATTTAGCGATGCTTTAATTGCAAGGCATATATGGATTTGCTCC
ATAATGAATTTTCTTAGTCTTGGTAATTTCTTAATATTACAGAAATCTTT
TGGTGTAGATGATATGTGGAGTGAATGCGATACCACTGTCGTGGAAAACA
AACTATTCGATACCAATGAATTGGTAAGATATACCTTGcaatatgaaaat
attaaatTCTAGGTCAAATACATCCTTCTTATTCCTTTTGGTAGATCTGA
TCGGTTTTTCAGGTACAACTGATCGCCCCTCCCTGCCTTTAGGATGGTTA
AACTTTCTCAATCCCGGCTTTTTCTTTCGAACATACCGGCAGAAATAAAT
TCTTGCTACCTACAAATGCATTGACAACACACAACGACTTTGGGACTGAC
TGCCTAAAATGTTGAAGCTAGTTTTGTACTTAACCAGGCTGATGGTATTT
TTCCGTTGTAAAAGTAATAATATGAAGTTTCCCcggaaatgaaaaagttt
tgtcTTACAGCCTTAACCGGAGAATAGCGTTCCATGTCGTTTACGACATG
AGTATTTCAGTTGAAATTTGTACGACTTTCAATCACACACTTCAATTTAG
TAAATTTGTGCATATTCTGTGACTATTTAACACTCGCCGCAGTGTGCTGC
TCTATTAGGCCTAAGTTATTTTTACTTCGTTTCTAAAATTACGTGCCAGT
AAGGATTCAAGCTGATTCAAGGCAGATCTTTTAACAAGCTGTATTTCTCC
CCACTTATTAATTAGCAATTATTTCACATacataatttctttttaattac
aGGGTATCAAATTACCTTCAATTATTTTACGTGCTCGATTTGTACTGACA
TAAGTTTTTGATTCGTGTGCACAATTTGTTCTACATTTCCTtatttgaag
ggacataaaagtagtaaaatgtaaacattgcgtgaaccacgtgtcattaa
agagaacaattaaaatcacgtgtccaaaacaaacttgtaaaacaattgaa
caatcacaattagccatatttggtNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNtatttggtttgattttttattttgacatgtgacatttgttttgatttt
gtatccgctgcatacagtttgtttacaaatttcgcaagtactatTATGTC
CCTTTGAATAGAGTTTCTGCCATATTTAATAGTCCTGTCTAGTGCATTGA
TTTCCTTTGAATTGCTCATTGGTGTTCGCCTGTCTCACTCACGTTAATTT
GATCTGTGCctgattaaaaaagaaatgtaaATGAGAAAATCCCATTctaa
ttcttttttgatttcaaaaagactttttttaaatctatcctTTTTACTAA
AGCCATGAATGCTAAGACTTGTCTCCTATTCTTCATTTGTAGGAAGGAGA
AGACCAACGCCCTGCCTCAAATAACGTCATCAGTCCACAGATTGAGGCAC
CAAGTGTTGATCTCCTAAAATCTCCTCCCTCAAGTACTTTATCAACTGAA
CGATCTATCTCTCCTAATCGtgaccaaaaaaaattacgaaGGAGGAGTGC
AAAAATCCGCGAAGAAAGCCATGAGAAGGAGATCGATTGGAGCCAATTCG
AATCTCAAACCGACCAATCAGAAGACGCTACAGTTGatattagccaatca
gattccgAGCATAATGAAAACATCCGATCAGAGGTCACCACAGAGAGTGA
GGACAATGGAGAAAGTGCTGTCGAGGAGCTTGAAAGATTTGACGATAACA
TCTTTAAGCGTAATCAGAAATCAGagattttaaaaatcaattctGTAGAT
GGTCAACATGGCTTGATAATAACGAAAAGTGTTCGACGAAAGGCTTCACA
TAAAGATCGATTCAGTTTTGAATACTCAGATGATGATTGCTACGAATCGA
ACGTTAAATCACCGATCGAAATTCCCGACAATGAACCGACTAAGAACGAG
AATGAGTTTATAAACGACTTtaaagaatttgaaaacaacactcaaaatgt
tttaaaagaatttcaagACGATAAAACACCGACAAATCTACCGACTGCTA
CTGacgatttattttttttcgggaAAACGGACGACAACTTACGACAACAC
TCGGCTCGTTCTCGTGAAAGTGGCCGGTATTCGGCTGCAAGTTCGGAGCT
TTACGAAAGCGAAAACGATTATGGGTCAACGCTGAGACTAAatgttgaaa
atgaagaaaataacaGAGTCCGCAGGAAACCATCCATCAAACGGTTGTtc
aaaaagaatcaaaacaagGCCAAACAAAATGAGGACCAAAACAACGAAGA
CTTAAGCAACCTCTTACAGAATAAAGACAGTGTTTTCCAGAAGAAAAAAC
GTAGATTTTTCCCattcatgaaaaagaagaaaagtggTACGGAGCAGATG
AAAGAAGGAAGTGAGGCTAGTGGTACTTGTTCAACGGCTAGTAGCTTAGA
TCTTAATGAAGACTTACAATCTGATTCTCCGGCAGACCCCAAACAGTTAG
AGACAGACATTATCACCATCGAAAGGTTACCTTTGATTACAGATATACAT
AACCAACAGCAAAATAGCGGGAAAGAAGTGGTTAACATTACAGCTCCAAG
CAATGCCAATCCCCCTAAAGAGAATACAATTGAAAATCTAACCTTACCAG
AAACTTCAGAATCTAAAGCAGCAGTAACTAACCAACAAGTACCTGATGAA
CTCTCTCAAAAATCTCTGCCAGTCAGTAACCCAGAGAAGGAACAACCTCC
TCAGACAACAAACCAAGCCAAGCAAGAATCCTCAAAGAAAGAGGACTTGA
TAACTAAACATTTGTTTACAAAGCTTGGACAGACTGTTGAAAATTTATCA
AGTCAAGAACAGATTTTAGAAGTTGGCATCAAACTATTGCGTAAACTTGG
TTGTTATTTTACAGAGGAAGATTTCGAAGCTCAGTTACGTAGTCCCGGTG
AAGTTGAAGTTGATCCGAATTTACCTAAAAAGTCGCAGTTTGTCTCCAAA
AGAGTTTTGGGTATTCTTAAAGATCATTGGATCTCTCTTggaaataaaga
aatagagacTGAACTCGTACCAAATCTAAACGAAGAACAGACTGAAACGA
CCAATGAAATTAAAGATCAACTTCAATTGTCCAATCAGAATGCAGATACA
ACTCAACAATACATTCCGATTAAAAACGATCTaccaaaatcaaccaatca
agTATCAATTCAACATCAACCAGCCAATCAAAACGACGAATCTTCAAAAC
CACTCAATGAAAAGAACGAAGAACAAGTATCGTCCAATCACATTACTGAA
TCATATTTTACCTCGTCCAATGAAATAGCAGAACCAATTGAATCAACCAA
TGAGATGTCTAATAAACGCCCGTCCACCAATGGTATGTTAGAACCCGAGA
ATCAAACCAGCGCGCCTGATTTTCCAGAGGAATCGAGGATCCGTATTCAA
CGTAAAATTTCCCTTAAGTCACAATCAAATGATTCGACAACCAATCACAG
CGAAGAAATCACCCAATCCGCCAATGAAATCGAACCAACAAAAGAACCAG
CCAATCAAAATCAAGACAATGTCCAAGCCACCAATGACATGCCTTCAACG
ATCGAACCACCAATCAAAATCACTGCAATAGACGAATTACCCAATCAAAA
TGAGCCTATCAAAACAGAAACACCAATCAGGAAAGAATCCCTCCCAAGCC
TCGTAATGGGTTCTCAAAATGTAACCGTGAGCCACGATACTGAATTTGAG
CACACAACGCACCAAGTTGGCTCCACAAACTATAAATCTGAGAAGAAAAT
ACAACTCATCAAATCTCTGTTGAGGAAAGCCGGGAAAGAAGAATCGGAGT
ATTTGAACTTTGAAGAGAGaattcaagaaaaaatgaagatggatgaagaa
aagaagaaaatgaaagctcAACAAGAAGAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026278-exon-sc0000566-1491911889:129982..130124 | TCONS_00026278-exon-sc0000566-1491911889:129982..130124 | Clytia hemisphaerica | exon |
| TCONS_00026278-exon-sc0000566-1510915933:129982..130124 | TCONS_00026278-exon-sc0000566-1510915933:129982..130124 | Clytia hemisphaerica | exon |
| TCONS_00026278-exon-sc0000566-1575043694:129982..130124 | TCONS_00026278-exon-sc0000566-1575043694:129982..130124 | Clytia hemisphaerica | exon |
| TCONS_00026278-exon-sc0000566-1491911889:132299..132406 | TCONS_00026278-exon-sc0000566-1491911889:132299..132406 | Clytia hemisphaerica | exon |
| TCONS_00026278-exon-sc0000566-1510915933:132299..132406 | TCONS_00026278-exon-sc0000566-1510915933:132299..132406 | Clytia hemisphaerica | exon |
| TCONS_00026278-exon-sc0000566-1575043694:132299..132406 | TCONS_00026278-exon-sc0000566-1575043694:132299..132406 | Clytia hemisphaerica | exon |
| TCONS_00026278-exon-sc0000566-1491911889:132874..132954 | TCONS_00026278-exon-sc0000566-1491911889:132874..132954 | Clytia hemisphaerica | exon |
| TCONS_00026278-exon-sc0000566-1510915933:132874..132954 | TCONS_00026278-exon-sc0000566-1510915933:132874..132954 | Clytia hemisphaerica | exon |
| TCONS_00026278-exon-sc0000566-1575043694:132874..132954 | TCONS_00026278-exon-sc0000566-1575043694:132874..132954 | Clytia hemisphaerica | exon |
| TCONS_00026278-exon-sc0000566-1491911889:134274..136813 | TCONS_00026278-exon-sc0000566-1491911889:134274..136813 | Clytia hemisphaerica | exon |
| TCONS_00026278-exon-sc0000566-1510915933:134274..136813 | TCONS_00026278-exon-sc0000566-1510915933:134274..136813 | Clytia hemisphaerica | exon |
| TCONS_00026278-exon-sc0000566-1575043694:134274..136813 | TCONS_00026278-exon-sc0000566-1575043694:134274..136813 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000566 | supercontig | sc0000566:129982..136813 + |
Blast
The following BLAST results are available for this feature:
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