TCONS_00026390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026390
Unique NameTCONS_00026390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026390 ID=TCONS_00026390|Name=TCONS_00026390|organism=Clytia hemisphaerica|type=transcript|length=1793bp
AAATTGATCTTTGTTATCTTGATTTTGATCCAAGCATCATCCAACAATGG
AAGGATTGTTCGTAACAAGATCATTGAATCACCTAATGGatccaaaatca
aaatccaTTACATTATCATGACCGGGTTTAATAACAAGAAGCTCCAAGGG
TCAACATCTATTCAAACAACGATGGTTAAAAGTGTTAGCCATTGCAAAGC
AGAATGTATCCGGGTTAACAGATGTATCTCCTTCAATGTCTTTCCGGCTG
GGTTACTTTTTGATTNAGAATGTATCTGGGTTAACAGCTGTATCTCCTTC
AATGTCTTCCCGGCTGGGTCATTTTTTGATTGTCAACTTTTTGACACAGA
TCATTATATTGACCAGCAACTGTTAACAGATCAAACGGGATATCAATACT
TCGTTATAAAGAGTAATTGCAGTGTTGGAGATCCAAACCTTAAATGTCCA
AATGAATTCACATACTGTAAACCAAACTATGATACAGACACCTCCACGTG
TGAATGTCGTTTTCCAGGTTGCTTAGATCCAGTGGTTTATACTTGCACAC
CAGGTCCAACCATAAACGATACAGATTGGATAACGGAAATTGGCACAACA
TCATCTGGTTGTCCTCAATAcacattcaaattcaaatttatgATGGCCGC
CATATATAGTTCTGCGTATAGCAAAGTTCTTTCTGTGGTTGATGCAGGTA
GTAATAGCGAATGGATCGGTTTCCGTGTAAACCGTAATTATAAAAGACTT
TTAACGGGTCTTCGTGGTGTGAGTGGTGGCGATAAGGTCATTGTTTCGTC
TTACCGAGCTAATGTCGAATATGTTATCATAGTTACATCATATAAGGAAC
CCGATGGTACTTGGTATTATAGAGTTACGTCGAATGGTAATGAGAAGTTG
GCCAGGACACATACCAAAAAGACTGGAACAGCAGCTGGCATGATAATCAA
GGTTGGCCGATGTGCGGGTTGTGTAGTTAGTGATTTTGAATATACATTTT
AAATCTTGATACAGTggaatctctataactcgaacattCACGGGGGAACG
CAAATTTATTAGAAAATATTAGTCCCCTCAGGTAGTGAGGGgtataaatt
actctctgtaatttgagcccttctctaattcgaagaaaactttttatccc
ttgaatatcgaattaaagagagtcaactgtacttCATCCTGTTGGCGTTA
TCTGGGTATGCATGGTGGGTCAAAGGTCATCGTTAATTGGGCTGAGATGT
AAAAAGGcccaaaattttggattttcccAGCAAAAAGTGGCTTTAATGTT
TGCCTGTTTTACTAAAATCGGATTAAATCGATCGAAAAatatcgcgaaat
tttctggattatccgccaaaaatgcaattttaaaaattttgtggtggatt
taatttcgcggaagGATGATTAAAATTTCACACAAACTTGGGATGAAAAT
TTGACCCAAACCTTGAATAACATTTCTCAGTTGATAACTTATGATATatg
gtggaggtcctataaaatcgttcgttcgttcgttcgtccgtctaaatttc
agccaaactttttggactttgtgaaatattttatcgttatttttttctga
ttttttgcatgaaagtagggtaccatcataggtaataGATGGTCGACGAA
gcagattttaacaaaaaaaaattttcacctcgaaaattgaatctttatcc
ataagaatcactatttataagcatacattaatgtttttagtcaaattact
caatttttttaattagaatggtgtttttttgcACGTGAAGGAT
Run BLAST on NCBI

transcript from alignment at sc0000570:145155..152356-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026390 ID=TCONS_00026390|Name=TCONS_00026390|organism=Clytia hemisphaerica|type=transcript|length=7202bp|location=Sequence derived from alignment at sc0000570:145155..152356- (Clytia hemisphaerica)
AAATTGATCTTTGTTATCTTGATTTTGATCCAAGCATCATCCAACAATGG
AAGGATTGTTCGTAACAAGATCATTGAATCACCTAATGGATCCAAAATCA
AAATCCATTACATTATCATGACCGGGTTTAATAACAAGAAGCTCCAAGGG
TCAACATCTATTCAAACAACGATGGTTAAAAGTGTTAGCCATTGCAAAGC
AGAATGTATCCGGGTTAACAGATGTATCTCCTTCAATGTCTTTCCGGCTG
GGTTACTTTTTGATTNAGAATGTATCTGGGTTAACAGCTGTATCTCCTTC
AATGTCTTCCCGGCTGGGTCATTTTTTGATTGTCAACTTTTTGACACAGA
TCATTATATTGACCAGCAACTGTTAACAGATCAAACGGGATATCAATACT
TCGTTATAAAGGTATTATCCTACAGTATTAAAGTATGATTTCCTAAAGGG
TACCGAAATTCTACACATAATCCCTCCCTTGTATATCCTTCCCCGATGCT
TACGCTAGAAAAGCAGGTCCTTAAAGAAAAAGAAATTCAAAAAACTTCAG
CAAAATTAATATTTTGTGTGGAAACTACAATTCATGATATGCACTACTGG
AGAGTCTTCTGGGAATTTTTAAAATTTTCCACCCAATACGTCACTTAAAC
AATAGAAAAAGTGACGTATCAATTGTAAAAGGGGTTACGCACGATACGAA
AATCTCGTGTTCGCAAGCGAAAGGTTTTTTACACCACATACTGTAGGATT
GCTAAACTTCCTTATTCCCAGCGAAACGTTCCGATTGCTAGTGTACAACG
GAAAAGGACCAAAACGCCACAAAAGTAGATTTAACACCGATTTTANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTATGATACAATTTTAAAAAGTTGTACCCAGCCGATTGCGTGATGCGTGA
TCGGGAAATAATTCGAGGCATGATTTGGGCTATTTTCGCGATATTTGCAT
TTTGAACAAACCTTTTTTGGTAATTTTCATGATCGTCACGAGAGCAAGGA
AAATTTCTATTAATGCATTTTAAACATGTACAAACTCTGGTGAACCAAAA
GAAAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGATGTTG
CAAGTATTTAATTTTTCAAATATAGCATGGTCAGATTTATCCACAAATAT
TCAGTCAACTGCCTTGTTAGAATTTGTGTAAATATACGGGCAAAATTTTG
TTGTGAAAGTTGATAAAATATCGACCGGATAAAATATCCTGTTTTTCAAG
AAGAGATTGCATCAATCTCTCAGCAATCTCTCATGCCAAACCAAACGAAA
CATCAAATTCAGGAAGGAATAATAAGAAAACTTCATCATCAACCATTTCT
TGTAACAATCACACAAAAATCATGATCCAATTCAACTCATTAAAGCATAA
AAAACAAAGAAAAATAGCGAAAGAGCGGTAGCAACCAGTTGTTTATTTAT
GCCGCCATCTTTGTTTTGACTGTTAAAAGGCAGTATGGTCCGATCAGCAA
TACGCTTCCGAACCGAGCGACGTTTCCCGATCGAGAAGGATACTTATATT
TTCGCGCGACGTTTCTCGAAGAAATGACGTATTCCTCGTCGTATGAAAAA
CATCCTACTGTTTTTCACGCCGGAGCTCGATTTGGAAAAAATCCANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGTCGGGTACAGGCGATAATTCTCCATATTGGGACTTAAGA
CAGTTGCACACGACGACGAAAGTCTGAATGGAAACGAGGCTGAAAAAGGG
TAAAAATCGATTTAATCACTCCGCATATCAGCTTTTTTTTCCCGCGCTTT
TGCCAAAAGAATCGCACTCGCTCGCTGCGCTCGCTCGTGCGTAATTAGGT
GGAACAAAAACAGAAAAGTTGCATAATTTCGTGAAGTCATTGCAGTGGTG
CATATCATGAATAGGAAGCTTTTGTTAAACCATGTTTTCACGTGACGGTT
TCGTTTCGCTCCGAAATGAAATGAAGCCTTTCTATTGGTTACATTCAAGT
GTTACGTCACTTCTAACCAATAGAATGGCTTCATTCTGTGTGGAATCTAA
AAGAAGGAGCTTTTTTTCAAGGATATGAAATTTTTCGAAGAGTGAATAAA
TTTTTCATTGAAAATTTCCTAAGAAGGAACAGAAGAACCAATTCCCCAAA
AATAATCAAATCTCAACTTAAAGGTTTTCTTTTTACATAAGTGCTCCCGT
TTCATATCAGGCACATATTTCATATCAGGACAGTGTCCCCCTATTGTTAT
ACTGTGCTGATATAAACAAAAAATTGATTTTCTTTTCCTCTTTCTGACCA
ATCTTTCTTCACATCCGTGTCAATCCAATGTGAAAAAGCTTGTGAATTAA
AATTGATGAGTAAGCAAACGATATCACTCTTATTTAAAAACAAAACCTTT
CAGTCCGTTACCTAAAATTTTCCTAAAAAGAACAAGAAGAGTCGATTTCC
CAGGATCTCAACTTAAGTCTGTTACCGTTCATATTTCCAAGACAATCTGC
CAAACTCCTGCCATACAGAATCAGAAACCAGAGTTATTTTGTGATTTATT
TCAGAGTAATTGCAGTGTTGGAGATCCAAACCTTAAATGTCCAAATGAAT
TCACATACTGTAAACCAAACTATGATACAGACACCTCCACGTGTGAATGT
CGTTTTCCAGGTTGCTTAGATCCAGTGGTTTATACTTGCACACCAGGTCC
AACCATAAACGATACAGATTGTAAGTACAATCGTGGTCGAAATCTATTGA
GAATTAAGCTTATTTCCTCGTTTTTTCGAAATTTGGAGTTCGGGCGAGAA
AGTCGAGTTTGGGCCATCTTTGAAATTTTAAATTTAATCTCATACTTCAA
TTTGGATCAGGTTTATAGACTTCCAGGCTATATTATGAGCCGTATTGGAC
CATTTTTGAGCTTTTGGATCCTCAGATCCTAAGGTCCTAAGTCTTAAGTC
TCATGTTAAAACTTTAAAACTCAAAGTTATAATCTACCCTTCCAACCTAC
TTTATAGCACTTACAAATCGATTGTGGTATCTAAACTTCCCGGTGAATTT
CCCTTTTTTCTCAGATATTACGACCATGCAGAGGAATGTAAAGAGATGGA
AAAACAGCTTCTTGAAAACAATGGAAAAACGGCTCGTCATATACCAGGTC
TCTTTCCCTTAAGGTTCTGTTGTTGTCGCTATAAAAAATCTGCATAATTA
GCGTGTTGTGACAAAATTCTTTTGTTTCAAGCCTGATTATGCGCAAACTT
TTAGGGCTTACATTTTGGGTACACCTCCCCTATACGAAAAGGTACCTATA
TCTTCTTGCTCAGAATTTCCCAGCGATTCTACTGATATAACTGCATCATG
ACTGCACTATGATATGGAAAGCTAGAGCTAGAGGAAATTATAACTTCATC
TTGATTTTACTCGACTTCTGACAGTTTTACAAGAACCAATTTAATATCAT
TGCGTTAAGAATTTTTTTTGCTATACATTGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCGGCAAAAAAGGAAAAACAAATTTTC
ATTTTTATCATCAAATCATGTAGAAACCGTCCGATTTGTATGGCGAGCCG
TCTTTTCTGGACTTTTATTTAATGACCTAATCAATGTTTTTACAATAGAA
TTTTCAATAGAAGTGATCGTTGAACTTTGAGTAATCAGAAAAGCTGTTTT
TCCATCTCTTTACATTCCTCTGGACCATGATTGTAAGTAATCTACACAAT
AGACAGCTCCAGGCTTTTAGGCCTTACTCTTGGTCCTTCGGGTCACCTCC
GACTGCAGTCAAGTCACAGACTTACTTTAGACCGACCTTAATCCCTTATT
TTTTTTCTAACTTTTCAGCATACAATCTGAATTTAGGGATAACGGAAATT
GGCACAACATCATCTGGTTGTCCTCAATACACATTCAAATTCAAATTTAT
GATGGCCGCCATATATAGTTCTGCGTATAGCAAAGTTCTTTCTGTGGTTG
ATGCAGGTAGTAATAGCGAATGGATCGGTTTCCGTGTAAACCGTAATTAT
AAAAGACTTTTAACGGGTCTTCGTGGTGTGAGTGGTGGCGATAAGGTCAT
TGTTTCGTCTTACCGAGCTAATGTCGAATATGTTATCATAGTTACATCAT
ATAAGGAACCCGATGGTACTTGGTATTATAGAGTTACGTCGAATGGTAAT
GAGAAGTTGGCCAGGACACATACCAAAAAGACTGGAACAGCAGCTGGCAT
GATAATCAAGGTTGGCCGATGTGCGGGTTGTGTAGTTAGTGATTTTGAAT
ATACATTTTAAATCTTGATACAGTGGAATCTCTATAACTCGAACATTCAC
GGGGGAACGCAAATTTATTAGAAAATATTAGTCCCCTCAGGTAGTGAGGG
GTATAAATTACTCTCTGTAATTTGAGCCCTTCTCTAATTCGAAGAAAACT
TTTTATCCCTTGAATATCGAATTAAAGAGAGTCAACTGTACTTCATCCTG
TTGGCGTTATCTGGGTATGCATGGTGGGTCAAAGGTCATCGTTAATTGGG
CTGAGATGTAAAAAGGCCCAAAATTTTGGATTTTCCCAGCAAAAAGTGGC
TTTAATGTTTGCCTGTTTTACTAAAATCGGATTAAATCGATCGAAAAATA
TCGCGAAATTTTCTGGATTATCCGCCAAAAATGCAATTTTAAAAATTTTG
TGGTGGATTTAATTTCGCGGAAGGATGATTAAAATTTCACACAAACTTGG
GATGAAAATTTGACCCAAACCTTGAATAACATTTCTCAGTTGATAACTTA
TGATATATGGTGGAGGTCCTATAAAATCGTTCGTTCGTTCGTTCGTCCGT
CTAAATTTCAGCCAAACTTTTTGGACTTTGTGAAATATTTTATCGTTATT
TTTTTCTGATTTTTTGCATGAAAGTAGGGTACCATCATAGGTAATAGATG
GTCGACGAAGCAGATTTTAACAAAAAAAAATTTTCACCTCGAAAATTGAA
TCTTTATCCATAAGAATCACTATTTATAAGCATACATTAATGTTTTTAGT
CAAATTACTCAATTTTTTTAATTAGAATGGTGTTTTTTTGCACGTGAAGG
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014816XLOC_014816Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026390-exon-sc0000570-1575043694:151946..152356TCONS_00026390-exon-sc0000570-1575043694:151946..152356Clytia hemisphaericaexon
TCONS_00026390-exon-sc0000570-1575043694:147687..147852TCONS_00026390-exon-sc0000570-1575043694:147687..147852Clytia hemisphaericaexon
TCONS_00026390-exon-sc0000570-1575043694:145155..146370TCONS_00026390-exon-sc0000570-1575043694:145155..146370Clytia hemisphaericaexon
TCONS_00026390-exon-sc0000570-1510915933:151946..152356TCONS_00026390-exon-sc0000570-1510915933:151946..152356Clytia hemisphaericaexon
TCONS_00026390-exon-sc0000570-1510915933:147687..147852TCONS_00026390-exon-sc0000570-1510915933:147687..147852Clytia hemisphaericaexon
TCONS_00026390-exon-sc0000570-1510915933:145155..146370TCONS_00026390-exon-sc0000570-1510915933:145155..146370Clytia hemisphaericaexon
TCONS_00026390-exon-sc0000570-1491911889:151946..152356TCONS_00026390-exon-sc0000570-1491911889:151946..152356Clytia hemisphaericaexon
TCONS_00026390-exon-sc0000570-1491911889:147687..147852TCONS_00026390-exon-sc0000570-1491911889:147687..147852Clytia hemisphaericaexon
TCONS_00026390-exon-sc0000570-1491911889:145155..146370TCONS_00026390-exon-sc0000570-1491911889:145155..146370Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000570supercontigsc0000570:145155..152356 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.20431	0.178375	0.282143	0.392823	0	0.196449	0.000236803	0.000986339	0.153057	0	0.181305	0	0	0	0.367248	4.13179e-05	0	0	0	0	0	0.147671	0	0	0	0	0.299676	9.47679e-05	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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