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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026903 ID=TCONS_00026903|Name=TCONS_00026903|organism=Clytia hemisphaerica|type=transcript|length=1202bp
aagattttgatattttggtcATATGATGAATGATAGTGGAAAGAGTGCAA
AACCTAGCCAAATAAAACAATTATAACTATCAAAGTTTTTGTTGGCATTG
TAAGGATGGATAGGAAAGATAATATATCGAGACATGCCTttctcgggtga
ttttggatAAATAGCCCCTCGTCCCATTGAAacattttaaagtatttttg
ggGCAGTATGATTCCCACATCATCAAAGAAAAATATAGAGAGACTCAAAC
GCAAGTGACTTTGAGTGATATATCAACGAGTAGGATAAAATTTCGGGGCT
CGGTTGAACTAATTTCTATCAATATTCAGTTTTAGAGGAGATACaacaaa
tttaaagaaaatttacagccaggaaaaaagaaaaaagatgccAATCTCAG
GAATCAAATGTGACAAAGAAGTAGTCGACAGTTTATTGGAGCTGAGAGAT
CACCGTAAACATCGTTTCATTTTCTATAAGATCCGTCGTAACGGGAAAGG
AGTTTCCGTCAACTTTTGTCGAAAAGGGAAACGTGATGCAACATTCGCTG
ATTTCTTGAGAGAAGTGCCAAAAGAGGAGCCACGGTATATCATTTATGAT
TTCACTTATATGACGAAGGAGTGGGAAAAGCGCGATCGAATCCTATTCAT
TTTCTGGAGTCCTGATCGAGCGAGGTGCGAAGATAAAGTGCAGTATACTT
CAACTAAATCAGCCATTTTGAAAGAAGTTCAAAAAGTGTTTGCCATGAAA
CATATCGAGGTTACTGATTTTAATGAGCTGAAAGAGAACGATTTGATTGA
GTATGGTCAACCGTTGAGAGAACGAGAAAATTCGTTGGTGGGTGTTGAAG
CAATCACTATCAATTGTTAATATGGTATATCTCAACAAGGAAACGAATGG
AAACAACGCAACTATCTTGCCAACTAAAACGTAAAATGGACAAAGAATAT
AAAggattgtaaaaaatgtaaatacaCCTGAATCTAAAATGTGAagggaa
aataaataatattagACAGTAAAGACAGTTGGTTACTGAAGAGCAACGAT
TGATAAATGAACATTATTCTAAATTCTTGCGTTTTCTTTGTAATATCAGA
CTTTTTTTTGCTAGAATTAGACTATTGGAGATAAACCTAGAATATGCTTC
AAATGTCAATTTAATGTTATCTCACTAATTGATCAATTTAATGTGGTCAA
GG Run BLAST on NCBI protein sequence of TCONS_00026903-protein >TCONS_00026903-protein ID=TCONS_00026903-protein|Name=TCONS_00026903-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MPISGIKCDKEVVDSLLELRDHRKHRFIFYKIRRNGKGVSVNFCRKGKRD
ATFADFLREVPKEEPRYIIYDFTYMTKEWEKRDRILFIFWSPDRARCEDK
VQYTSTKSAILKEVQKVFAMKHIEVTDFNELKENDLIEYGQPLRERENSL
VGVEAITINC Run BLAST on NCBI transcript from alignment at sc0000596:128067..129356+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026903 ID=TCONS_00026903|Name=TCONS_00026903|organism=Clytia hemisphaerica|type=transcript|length=1290bp|location=Sequence derived from alignment at sc0000596:128067..129356+ (Clytia hemisphaerica)
aagattttgatattttggtcATATGATGAATGATAGTGGAAAGAGTGCAA
AACCTAGCCAAATAAAACAATTATAACTATCAAAGTTTTTGTTGGCATTG
TAAGGATGGATAGGAAAGATAATATATCGAGACATGCCTttctcgggtga
ttttggatAAATAGCCCCTCGTCCCATTGAAacattttaaagtatttttg
ggGCAGTATGATTCCCACATCATCAAAGAAAAATATAGAGAGACTCAAAC
GCAAGTGACTTTGAGTGATATATCAACGAGTAGGATAAAATTTCGGGGCT
CGGTTGAACTAATTTCTATCAATATTCAGTTTTAGAGGAGATACaacaaa
tttaaagaaaatttacagccaggaaaaaagaaaaaagatgccAATCTCAG
GAATCAAATGTGACAAAGAAGTAGTCGACAGTTTATTGGAGCTGAGAGAT
CACCGTAAACATCGTTTCATTTTCTATAAGATCCGTCGTAACGGGAAAGG
AGTTTCCGTCAACTTTTGTCGAAAAGGGAAACGTGATGCAACATTCGCTG
ATTTCTTGAGAGAAGTGCCAAAAGAGGAGCCACGGTATATCATTTATGAT
TTCACTTATATGACGAAGGAGTGGGAAAAGCGCGATCGAATCCTATTCAT
TTTCTGGAGTCCTGATCGAGCGAGGTGCGAAGATAAAGTGCAGTATACTT
CAACTAAATCAGCCATTTTGAAAGAAGTTCAAAAAGTGTTTGCCATGAAA
CATATCGAGGTTACTGATTTTAATGAGCTGAAAGAGAACGATTTGATTGA
GTATGGTCAACCGTTGAGAGAACGAGAAAATTCGTTGGTGGGTGTTGAAG
CAATCACTATCAATTGTTAATATGGTATATCTCAACAAGGAAACGAATGG
AAACAACGCAACTATCTTGCCAACTAAAACGTAAAATGGACAAAGAATAT
AAAggattgtaaaaaatgtaaatacaCCTGAATCTAAAATGTGAagggaa
aataaataatattagACAGTAAAGACAGTTGGTTACTGAAGAGCAACGAT
TGATAAATGAACATTATTCTAAATTCTTGCGTTTTCTTTGTATTNaaata
ttagaaataaagacaGTTAGTAGCTGAAGAACAACGATTGATAAATGAAC
ATTATTCTAAATTCTTGCGTTTTCTTTGTAATATCAGACTTTTTTTTGCT
AGAATTAGACTATTGGAGATAAACCTAGAATATGCTTCAAATGTCAATTT
AATGTTATCTCACTAATTGATCAATTTAATGTGGTCAAGG Coding sequence (CDS) from alignment at sc0000596:128067..129356+ >TCONS_00026903 ID=TCONS_00026903|Name=TCONS_00026903|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at sc0000596:128067..129356+ (Clytia hemisphaerica)
atgccAATCTCAGGAATCAAATGTGACAAAGAAGTAGTCGACAGTTTATT
GGAGCTGAGAGATCACCGTAAACATCGTTTCATTTTCTATAAGATCCGTC
GTAACGGGAAAGGAGTTTCCGTCAACTTTTGTCGAAAAGGGAAACGTGAT
GCAACATTCGCTGATTTCTTGAGAGAAGTGCCAAAAGAGGAGCCACGGTA
TATCATTTATGATTTCACTTATATGACGAAGGAGTGGGAAAAGCGCGATC
GAATCCTATTCATTTTCTGGAGTCCTGATCGAGCGAGGTGCGAAGATAAA
GTGCAGTATACTTCAACTAAATCAGCCATTTTGAAAGAAGTTCAAAAAGT
GTTTGCCATGAAACATATCGAGGTTACTGATTTTAATGAGCTGAAAGAGA
ACGATTTGATTGAGTATGGTCAACCGTTGAGAGAACGAGAAAATTCGTTG
GTGGGTGTTGAAGCAATCACTATCAATTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026903-exon-sc0000596-1491911889:128067..129128 | TCONS_00026903-exon-sc0000596-1491911889:128067..129128 | Clytia hemisphaerica | exon |
| TCONS_00026903-exon-sc0000596-1510915933:128067..129128 | TCONS_00026903-exon-sc0000596-1510915933:128067..129128 | Clytia hemisphaerica | exon |
| TCONS_00026903-exon-sc0000596-1575043694:128067..129128 | TCONS_00026903-exon-sc0000596-1575043694:128067..129128 | Clytia hemisphaerica | exon |
| TCONS_00026903-exon-sc0000596-1491911889:129217..129356 | TCONS_00026903-exon-sc0000596-1491911889:129217..129356 | Clytia hemisphaerica | exon |
| TCONS_00026903-exon-sc0000596-1510915933:129217..129356 | TCONS_00026903-exon-sc0000596-1510915933:129217..129356 | Clytia hemisphaerica | exon |
| TCONS_00026903-exon-sc0000596-1575043694:129217..129356 | TCONS_00026903-exon-sc0000596-1575043694:129217..129356 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000596 | supercontig | sc0000596:128067..129356 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003779 | actin binding |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
| GO:0015629 | actin cytoskeleton |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0030042 | actin filament depolymerization |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0030042 |
actin filament depolymerization |
| cellular_component |
GO:0015629 |
actin cytoskeleton |
| cellular_component |
GO:0005622 |
intracellular |
| molecular_function |
GO:0003779 |
actin binding |
Blast
The following BLAST results are available for this feature:
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