TCONS_00027175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027175
Unique NameTCONS_00027175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027175 ID=TCONS_00027175|Name=TCONS_00027175|organism=Clytia hemisphaerica|type=transcript|length=357bp
CAACTTTTTACTTCTTTATCCTACTCCCAAATAAGAGGACGAGGATAAAT
CGAGACCAAAGTGATTTGCTGGAATTAGAGAGCTAACCAACCATGAGAAG
TTTAACATTACTTTTGGTCAGTGCCATCATTGGCTTAACTTACGCAGGCT
ACTATCCACGCCCGAACTTTTGTAAAGGTGTGAACTGCAAAAATGGTGGA
AACTGCAGAAGCCTTTATACCTCTTTCAAATGTGAATGCAAGAAAGGATT
CACTGGAAAGTTCTGTCAAACCAACATCAATGATTGCAAGAGAAATAGCT
GCAAgaacggaggaaaatgcaaagATCTTGTCAATGGTTTCAAATGTGAA
TGCAAGA
Run BLAST on NCBI

transcript from alignment at sc0000608:117953..119866-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027175 ID=TCONS_00027175|Name=TCONS_00027175|organism=Clytia hemisphaerica|type=transcript|length=1914bp|location=Sequence derived from alignment at sc0000608:117953..119866- (Clytia hemisphaerica)
CAACTTTTTACTTCTTTATCCTACTCCCAAATAAGAGGACGAGGATAAAT
CGAGACCAAAGTGATTTGCTGGAATTAGAGGTAAGTTTTTTCGATACTTT
TATCAATGAAGCGTATTACTCTTGGCTACCCAATAGCCGGGAGGTTTGGA
ATAAGTGGGTGGTTGGAAAAAATCTCAAAACTTGGAATAAGAATGTCCTG
GGTGGAAAATTTTCGAAAAATTAATTAGCGGGTCCCCCGGCTATTAGATA
CCCGAAAGTAGTCCATTTCCAAAAACATTACTTATCAAGTTGCAGACCTC
TAAGAAGCCATACAATCACCTCGCAATTCAGCTTCTGTCATATTTGCTAT
ACTGGAGTCGTTCATAATCCATGTTATACAGTGTTATATTAGTGTTAAGT
AATATTACAATAATGCAATACAATAATATTACAAATCTCACGGTCTGTTA
GCACAAAAATACTTCAGATGGTGATAAAAGCATGACATTTGGCACAGATG
ATCCTTAGAAGGTCTAAAACTAAATTTTAAACAGCAGCACCAAATTTTGC
AACCTGGCCACCTGCGGGATAATATCAGTTTGTATCTAGACTGGACACCT
CCAGTGACTAGGCGACTATAATATGTCCAGTCATTAGTTTTTGCTTTTAT
TGCTTACCATGTCTGAATTAGTCATCTAGCATTCTAGCCATGTCCCTGTC
ATTTGATAAAATTTTATTTTGTTATGTTTTAGAGCTAACCAACCATGAGA
AGTTTAACATTACTTTTGGTCAGTGCCATCATTGGCTTAACTTACGCAGG
TACGTTCGTTTTTATGTGAAACATTCTTTAGAGAGGGAACCCTCTGAATT
TGAAACGTTTCTTTTCTTTTAATCTCTGGGTTTTCAAATATATAGTTAAG
ATTTAGTCTTCTATTCATATATTCTGGGCAGGAGGTACTAGAGCTGCACG
CTGGTAGATATGTGTCGCCCGACTTTCAACCTTCGGATCCAGCGGGACTA
GAACGACGAAAATGTTGTGAATTTTACGTATATTTCCATCTATCAAGGTG
TAATTTTTTCTATTCTTCCTACCCTTACAAAGACTTACAAGTTCGAAAAA
GTCACCTTTCAGGGCAGCACATACCTGTAATCTTCACTTACCTAGGTTCT
CCCTCACGGATCGTATATGGGTGCATTCACCTATGCAACTTTGTATAGTG
TGCATTATTCAATGTTAACAAAATGTTATTTTTCCTTTTAATTTTTAGGC
TACTATCCACGCCCGAACTTTTGTAAAGGTGTGAACTGCAAAAATGGTGG
AAACTGCAGAAGCCTTTATACCTCTTTCAAATGTGAATGCAAGAAAGGAT
TCACTGGAAAGTTCTGTCAAACCAACATCAATGATTGCAAGAGAAATATC
TGCAAGAACGGAGGAAAATGCAAAGATCTTGTCAATGGTTTCAATTGTGA
ATGCAAGAAAGGATTCACAGGAAAATTCTGTCAAACCAACATCAACGATT
GCAAGAGAAATAGCTGTAAGAACGGAGGAAAATGCAAAGATCTTGTCAAT
GGTTTCAAATGTGAATGCAAAAAAGGATTTACTGGCAAATTCTGTCAAAC
CAACATCAACGATTGCAAGAGAAATAGCTGCAAGAACGGAGGAAAATGCA
AAGATCTTGTCAATGGTTTCAAATGTCAATGCAAGAAAGGATTCACTGGA
AAGTTCTGTCAAACTAACGTCAATGATTGCAAGAGAAATAGCTGCAAGAA
CGGAGGAAAATGCAAAGATCTTGTCAATGGTTTCAAATGTGAATGCAAGA
AAGGATTCAATGGAAAATTCTGTCAAACCAACATCAATGATTGCAAGAGA
AATAGCTGCAAGAACGGAGGAAAATGCAAAGATCTTGTCAATGGTTTCAA
ATGTGAATGCAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015278XLOC_015278Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027175-exon-sc0000608-1575043694:119787..119866TCONS_00027175-exon-sc0000608-1575043694:119787..119866Clytia hemisphaericaexon
TCONS_00027175-exon-sc0000608-1575043694:119068..119134TCONS_00027175-exon-sc0000608-1575043694:119068..119134Clytia hemisphaericaexon
TCONS_00027175-exon-sc0000608-1575043694:118491..118618TCONS_00027175-exon-sc0000608-1575043694:118491..118618Clytia hemisphaericaexon
TCONS_00027175-exon-sc0000608-1575043694:117953..118034TCONS_00027175-exon-sc0000608-1575043694:117953..118034Clytia hemisphaericaexon
TCONS_00027175-exon-sc0000608-1510915933:119787..119866TCONS_00027175-exon-sc0000608-1510915933:119787..119866Clytia hemisphaericaexon
TCONS_00027175-exon-sc0000608-1510915933:119068..119134TCONS_00027175-exon-sc0000608-1510915933:119068..119134Clytia hemisphaericaexon
TCONS_00027175-exon-sc0000608-1510915933:118491..118618TCONS_00027175-exon-sc0000608-1510915933:118491..118618Clytia hemisphaericaexon
TCONS_00027175-exon-sc0000608-1510915933:117953..118034TCONS_00027175-exon-sc0000608-1510915933:117953..118034Clytia hemisphaericaexon
TCONS_00027175-exon-sc0000608-1491911889:119787..119866TCONS_00027175-exon-sc0000608-1491911889:119787..119866Clytia hemisphaericaexon
TCONS_00027175-exon-sc0000608-1491911889:119068..119134TCONS_00027175-exon-sc0000608-1491911889:119068..119134Clytia hemisphaericaexon
TCONS_00027175-exon-sc0000608-1491911889:118491..118618TCONS_00027175-exon-sc0000608-1491911889:118491..118618Clytia hemisphaericaexon
TCONS_00027175-exon-sc0000608-1491911889:117953..118034TCONS_00027175-exon-sc0000608-1491911889:117953..118034Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000608supercontigsc0000608:117953..119866 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.373058	0	0	0	0	0	0.815283	37.0681	3.06529	0	0	0.254822	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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