TCONS_00027270 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027270
Unique NameTCONS_00027270
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027270 ID=TCONS_00027270|Name=TCONS_00027270|organism=Clytia hemisphaerica|type=transcript|length=648bp
TCAAAAGttaatgaaatcaaaatcaaagccGCAATTATACTCACCTGGAC
ATTTGATAATtaacaaaattcgccaaaatatgAGAGACGATATTGAAATT
CTGAAGCATGGGTGTCTTTATGCACGATTGAATAACATATATGAAGAAAT
TAACTTTGCCATTGTCGCGGCCGGGATTTGAACCCGGATTCTTCGTCAAA
CGAAACATCTTACTTAGATGACCgcgacttttttgttttttcctaaaaag
tagctaattacattttataaaacgaTTTACCAAATTCATCTATCCAATGA
AATCTTCTCTACTTTCGACTGACAGTAGGCATACCACGGACAACTGTtga
taaattcttttttctttttttccaaatgCTTTGAGAGGACCTTGATACCA
TAGAAGGGGTGATCGTCATCATAATGCTTAGACATCCCCACAAAAGTCTT
CTCCTCTGCTTCTAAATAGCTCTGAACGCATTTTTCGTGCATTGCTTTGG
CGACTTCTAGTGACGGAGGCTCTCTCTGCATgttttctcaatattttttg
tttttagatatttttaataTGCTAAatctagaaaaaaagaaaatgatggA
AAGTAtggtttttttttatgaaataacgCTACTGTGTAAGgtttgtaa
Run BLAST on NCBI

transcript from alignment at sc0000612:100705..101352

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027270 ID=TCONS_00027270|Name=TCONS_00027270|organism=Clytia hemisphaerica|type=transcript|length=648bp|location=Sequence derived from alignment at sc0000612:100705..101352 (Clytia hemisphaerica)
ttacaaacCTTACACAGTAGcgttatttcataaaaaaaaaccaTACTTTc
catcattttctttttttctagatTTAGCAtattaaaaatatctaaaaaca
aaaaatattgagaaaacATGCAGAGAGAGCCTCCGTCACTAGAAGTCGCC
AAAGCAATGCACGAAAAATGCGTTCAGAGCTATTTAGAAGCAGAGGAGAA
GACTTTTGTGGGGATGTCTAAGCATTATGATGACGATCACCCCTTCTATG
GTATCAAGGTCCTCTCAAAGcatttggaaaaaaagaaaaaagaatttatc
aACAGTTGTCCGTGGTATGCCTACTGTCAGTCGAAAGTAGAGAAGATTTC
ATTGGATAGATGAATTTGGTAAAtcgttttataaaatgtaattagctact
ttttaggaaaaaacaaaaaagtcgcGGTCATCTAAGTAAGATGTTTCGTT
TGACGAAGAATCCGGGTTCAAATCCCGGCCGCGACAATGGCAAAGTTAAT
TTCTTCATATATGTTATTCAATCGTGCATAAAGACACCCATGCTTCAGAA
TTTCAATATCGTCTCTcatattttggcgaattttgttaATTATCAAATGT
CCAGGTGAGTATAATTGCggctttgattttgatttcattaaCTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015347XLOC_015347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027270-exon-sc0000612-1491911889:100705..101352TCONS_00027270-exon-sc0000612-1491911889:100705..101352Clytia hemisphaericaexon
TCONS_00027270-exon-sc0000612-1510915933:100705..101352TCONS_00027270-exon-sc0000612-1510915933:100705..101352Clytia hemisphaericaexon
TCONS_00027270-exon-sc0000612-1575043694:100705..101352TCONS_00027270-exon-sc0000612-1575043694:100705..101352Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000612supercontigsc0000612:100705..101352 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.108983	0.17224	0	0	0.136202	0.168709	0	0.0538223	0	0.111635	0.404305	0.275425	0.0606674	0.225443	0	0	0.0781364	0.228673	0.0926608	0.0842421	0.0867674	0	0.110813	0.118263	0.0896982	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top