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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027275 ID=TCONS_00027275|Name=TCONS_00027275|organism=Clytia hemisphaerica|type=transcript|length=1165bp
GTCAGTAAGATCTATAAAGATTTTGTGTCCTGAAGAgaagtatttttcaa
aacttggaaAGTTACTCGCAGCATTATAGCCAACCATGTCTATTCTATTT
TGATCTGTGCAGGAGTCTGTCATGTAACCCAGAAACTGATTGTAAAGTCT
GTATTTATCAATGCTGTCCTCGAAATCGTATCGAATATGAGGGTTTTCGA
GCATAGCGCTTTTAGctctttgaatttcaatttttttgatgtgCGTGCTT
GCGAATTCTTCATCATAAGTGTCATAGATACTATTGTGTTCTTGACTTTC
AACCGTAGATAATCCgatttcaataaatttgaattttttgtataatGCCG
GGAAGTTAAACTGCTGTTGGGCGGTGCCTGCAGTCATTTGTGCTCCGTAC
AACGTAAAATTTTCAATACTGCCGTAAGAATATttaagtagtaagtaagt
ctgcgaccacagtcggaggcgacccgaaggctcctctttcgatagctatc
tacccgaaggtaggggagggcgccactctttctccctggattgctccaca
aGAATATTTACCAGTGCCATTGTACATGTTATTGAAATAATTTTGCCCAG
CTGCTGACATTTGATACATGCTAACCATAATGTACGGCTGCTTAGTAATA
ACGAACTGACCGGGCTTATCAGTGAGGTCGCCATCTTTTTTTATCGATTC
CATATATTTCACAGAgtctttttgtattttcaatgtTAGTTCTAGCCCGT
CAACGTCTAAAGTATTTCTTCTGAAGCTAGGCGCTAAAAGCTTGAGGGGA
ATGTTGTACTCCTTTTCGACTTTCCATTGGGCGTTTTTGTTAGCTCTGGT
TTTTTGAGCCGTGTTAGCTATGGCGTTATCGGCTTCCAAATTTCTTCGCC
CGATAATATCGGTGGAATTGTCGTATTGTAATACTTCTAGAAGATCAAGA
TTCGCCTTTGGAGTGTTGTAgtgaatctttttaaaataatgtCGAGCGGG
AGGGTTTTCTGTAGGAGAAAACGACATTCCGGTGTCTAATGTTTTTTCTA
CAACGTCTTCAAAGTACAAACCAGGCCATCCACTAGTGGGGTTGCTAGTT
GCCGCTAGAGCGGTACCGTCGTTTTCTGTGAATTTTCCAGTAAGTGTTAA
TGTTACTAATGACGG Run BLAST on NCBI protein sequence of TCONS_00027275-protein >TCONS_00027275-protein ID=TCONS_00027275-protein|Name=TCONS_00027275-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
PSLVTLTLTGKFTENDGTALAATSNPTSGWPGLYFEDVVEKTLDTGMSFS
PTENPPARHYFKKIHYNTPKANLDLLEVLQYDNSTDIIGRRNLEADNAIA
NTAQKTRANKNAQWKVEKEYNIPLKLLAPSFRRNTLDVDGLELTLKIQKD
SVKYMESIKKDGDLTDKPGQFVITKQPYIMVSMYQMSAAGQNYFNNMYNG
TGKYSCGAIQGERVAPSPTFG Run BLAST on NCBI transcript from alignment at sc0000612:122918..124082 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027275 ID=TCONS_00027275|Name=TCONS_00027275|organism=Clytia hemisphaerica|type=transcript|length=1165bp|location=Sequence derived from alignment at sc0000612:122918..124082 (Clytia hemisphaerica)
CCGTCATTAGTAACATTAACACTTACTGGAAAATTCACAGAAAACGACGG
TACCGCTCTAGCGGCAACTAGCAACCCCACTAGTGGATGGCCTGGTTTGT
ACTTTGAAGACGTTGTAGAAAAAACATTAGACACCGGAATGTCGTTTTCT
CCTACAGAAAACCCTCCCGCTCGacattattttaaaaagattcacTACAA
CACTCCAAAGGCGAATCTTGATCTTCTAGAAGTATTACAATACGACAATT
CCACCGATATTATCGGGCGAAGAAATTTGGAAGCCGATAACGCCATAGCT
AACACGGCTCAAAAAACCAGAGCTAACAAAAACGCCCAATGGAAAGTCGA
AAAGGAGTACAACATTCCCCTCAAGCTTTTAGCGCCTAGCTTCAGAAGAA
ATACTTTAGACGTTGACGGGCTAGAACTAacattgaaaatacaaaaagac
TCTGTGAAATATATGGAATCGATAAAAAAAGATGGCGACCTCACTGATAA
GCCCGGTCAGTTCGTTATTACTAAGCAGCCGTACATTATGGTTAGCATGT
ATCAAATGTCAGCAGCTGGGCAAAATTATTTCAATAACATGTACAATGGC
ACTGGTAAATATTCttgtggagcaatccagggagaaagagtggcgccctc
ccctaccttcgggtagatagctatcgaaagaggagccttcgggtcgcctc
cgactgtggtcgcagacttacttactacttaaATATTCTTACGGCAGTAT
TGAAAATTTTACGTTGTACGGAGCACAAATGACTGCAGGCACCGCCCAAC
AGCAGTTTAACTTCCCGGCattatacaaaaaattcaaatttattgaaatc
GGATTATCTACGGTTGAAAGTCAAGAACACAATAGTATCTATGACACTTA
TGATGAAGAATTCGCAAGCACGcacatcaaaaaaattgaaattcaaagag
CTAAAAGCGCTATGCTCGAAAACCCTCATATTCGATACGATTTCGAGGAC
AGCATTGATAAATACAGACTTTACAATCAGTTTCTGGGTTACATGACAGA
CTCCTGCACAGATCAAAATAGAATAGACATGGTTGGCTATAATGCTGCGA
GTAACTttccaagttttgaaaaatacttcTCTTCAGGACACAAAATCTTT
ATAGATCTTACTGAC Coding sequence (CDS) from alignment at sc0000612:122918..124082 >TCONS_00027275 ID=TCONS_00027275|Name=TCONS_00027275|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at sc0000612:122918..124082 (Clytia hemisphaerica)
CCGTCATTAGTAACATTAACACTTACTGGAAAATTCACAGAAAACGACGG
TACCGCTCTAGCGGCAACTAGCAACCCCACTAGTGGATGGCCTGGTTTGT
ACTTTGAAGACGTTGTAGAAAAAACATTAGACACCGGAATGTCGTTTTCT
CCTACAGAAAACCCTCCCGCTCGacattattttaaaaagattcacTACAA
CACTCCAAAGGCGAATCTTGATCTTCTAGAAGTATTACAATACGACAATT
CCACCGATATTATCGGGCGAAGAAATTTGGAAGCCGATAACGCCATAGCT
AACACGGCTCAAAAAACCAGAGCTAACAAAAACGCCCAATGGAAAGTCGA
AAAGGAGTACAACATTCCCCTCAAGCTTTTAGCGCCTAGCTTCAGAAGAA
ATACTTTAGACGTTGACGGGCTAGAACTAacattgaaaatacaaaaagac
TCTGTGAAATATATGGAATCGATAAAAAAAGATGGCGACCTCACTGATAA
GCCCGGTCAGTTCGTTATTACTAAGCAGCCGTACATTATGGTTAGCATGT
ATCAAATGTCAGCAGCTGGGCAAAATTATTTCAATAACATGTACAATGGC
ACTGGTAAATATTCttgtggagcaatccagggagaaagagtggcgccctc
ccctaccttcgggtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027275-exon-sc0000612-1491911889:122918..124082 | TCONS_00027275-exon-sc0000612-1491911889:122918..124082 | Clytia hemisphaerica | exon |
| TCONS_00027275-exon-sc0000612-1510915933:122918..124082 | TCONS_00027275-exon-sc0000612-1510915933:122918..124082 | Clytia hemisphaerica | exon |
| TCONS_00027275-exon-sc0000612-1575043694:122918..124082 | TCONS_00027275-exon-sc0000612-1575043694:122918..124082 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000612 | supercontig | sc0000612:122918..124082 . |
Blast
The following BLAST results are available for this feature:
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