TCONS_00027396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027396
Unique NameTCONS_00027396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027396 ID=TCONS_00027396|Name=TCONS_00027396|organism=Clytia hemisphaerica|type=transcript|length=551bp
GATGTAAAGTTAAAAGTTAATTGTATATTTATTGATTTGTTTCGTAACTT
TGAAGAAGATGGTTTATTAGACCCAGCCAATGAGGTTCACTTGCTTGCCC
TTCAATACATTTTTTGTCCTCGCATCAACAAAAAGCTACAAGAGTTCATG
TCAAGTTGGAACAATCATCCTATCCGAACTGAAAAAAACTCAACACCGTT
ACAGCTCTGGATTGAAGGAATCTATAAAAGCTTTGAGGATGGCATTCTTG
AACGAACAAATGTTGATGTAGATGAGGACTATGGTGTAGATGGTGATGAA
TCAGATaatgatgatgaagatgaagaacaaTACACAGTTGAAGTGCCACA
AATTCTTCTTGGTTTGGATGagaatcaacaaaattttgttaCCTCTATAG
ATCCACTTCAAGATGATGGCGAAGAGGGAAGATCCTTATTTCAAAGATTA
GTAAACTTTCTTGAATCGTAGATCAACGTAGGAACAAGAATTAAAATTGT
GACATTtgtttaccttaaaggaagaaattttggcgggaatttaatttggc
a
Run BLAST on NCBI

protein sequence of TCONS_00027396-protein

>TCONS_00027396-protein ID=TCONS_00027396-protein|Name=TCONS_00027396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
DVKLKVNCIFIDLFRNFEEDGLLDPANEVHLLALQYIFCPRINKKLQEFM
SSWNNHPIRTEKNSTPLQLWIEGIYKSFEDGILERTNVDVDEDYGVDGDE
SDNDDEDEEQYTVEVPQILLGLDENQQNFVTSIDPLQDDGEEGRSLFQRL
VNFLES
Run BLAST on NCBI

transcript from alignment at sc0000620:51282..51832

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027396 ID=TCONS_00027396|Name=TCONS_00027396|organism=Clytia hemisphaerica|type=transcript|length=551bp|location=Sequence derived from alignment at sc0000620:51282..51832 (Clytia hemisphaerica)
tgccaaattaaattcccgccaaaatttcttcctttaaggtaaacaAATGT
CACAATTTTAATTCTTGTTCCTACGTTGATCTACGATTCAAGAAAGTTTA
CTAATCTTTGAAATAAGGATCTTCCCTCTTCGCCATCATCTTGAAGTGGA
TCTATAGAGGtaacaaaattttgttgattctCATCCAAACCAAGAAGAAT
TTGTGGCACTTCAACTGTGTAttgttcttcatcttcatcatcattATCTG
ATTCATCACCATCTACACCATAGTCCTCATCTACATCAACATTTGTTCGT
TCAAGAATGCCATCCTCAAAGCTTTTATAGATTCCTTCAATCCAGAGCTG
TAACGGTGTTGAGTTTTTTTCAGTTCGGATAGGATGATTGTTCCAACTTG
ACATGAACTCTTGTAGCTTTTTGTTGATGCGAGGACAAAAAATGTATTGA
AGGGCAAGCAAGTGAACCTCATTGGCTGGGTCTAATAAACCATCTTCTTC
AAAGTTACGAAACAAATCAATAAATATACAATTAACTTTTAACTTTACAT
C

Coding sequence (CDS) from alignment at sc0000620:51282..51832

>TCONS_00027396 ID=TCONS_00027396|Name=TCONS_00027396|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at sc0000620:51282..51832 (Clytia hemisphaerica)
CTACGATTCAAGAAAGTTTACTAATCTTTGAAATAAGGATCTTCCCTCTT
CGCCATCATCTTGAAGTGGATCTATAGAGGtaacaaaattttgttgattc
tCATCCAAACCAAGAAGAATTTGTGGCACTTCAACTGTGTAttgttcttc
atcttcatcatcattATCTGATTCATCACCATCTACACCATAGTCCTCAT
CTACATCAACATTTGTTCGTTCAAGAATGCCATCCTCAAAGCTTTTATAG
ATTCCTTCAATCCAGAGCTGTAACGGTGTTGAGTTTTTTTCAGTTCGGAT
AGGATGATTGTTCCAACTTGACATGAACTCTTGTAGCTTTTTGTTGATGC
GAGGACAAAAAATGTATTGAAGGGCAAGCAAGTGAACCTCATTGGCTGGG
TCTAATAAACCATCTTCTTCAAAGTTACGAAACAAATCAATAAATATACA
ATTAACTTTTAACTTTACATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015419XLOC_015419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027396-exon-sc0000620-1491911889:51282..51832TCONS_00027396-exon-sc0000620-1491911889:51282..51832Clytia hemisphaericaexon
TCONS_00027396-exon-sc0000620-1510915933:51282..51832TCONS_00027396-exon-sc0000620-1510915933:51282..51832Clytia hemisphaericaexon
TCONS_00027396-exon-sc0000620-1575043694:51282..51832TCONS_00027396-exon-sc0000620-1575043694:51282..51832Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027396-proteinTCONS_00027396-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000620supercontigsc0000620:51282..51832 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.443901	0	0.345816	0	5.52132	4.62509	3.44197	3.34561	0.302696	1.56508	1.47384	1.19749	0.698569	1.41716	1.39873	2.50129	4.29571	2.17803	1.55268	2.61634	2.3845	3.3306	1.20731	0.177361	0	0.15828	1.374	1.98107	0.708074	0.425152
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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