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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027493 ID=TCONS_00027493|Name=TCONS_00027493|organism=Clytia hemisphaerica|type=transcript|length=1332bp
tactgtgtcataaaaatctgctctcctacacaaattttgtgccCCTCCTG
TATGCGGTACTGCCCTCTAGAAAATCTGGAAATAACCCAAAAACTTGAAT
GTGTTATTTTTGGAGAATAATTATACTTTTGGGcaaaaattagtattttt
aatataattgatgtAAATTAGCATGCAAGATCTGAAGATAAACTTACCGT
Caatggctctaacttgggacagtttgataaaacatgggacagcaattcgg
ccatcaTTTTacagaacctccaaagtcatttaattaacatagtCGCAAAT
CTCATACAAAACAAACTTTGTTGTCAagagagatttaacagtaagtgaaa
atgcataccagaaagtcaaccatcccattatatgaccactcgtcccaagt
tagagccgttgacggtacacaggaaaaaattcagaaaaattcctTGTGAC
TTTTTAgtgaattcacaTTGAAACTAGGTGAAAAGTTGCAACCTTTCTAC
AATTCACAGCTTTTTTGAGTGAATTATTGAATGATTGCAGCTTTTCAACA
TGAATTCACTAAAATGTCACGGTGATTTTCTcgtaaatcttatcatttga
tgtccccaatataatatataaacaaTGGCCATATTATTGCAAAAATCCTT
TCAGTGTCTTTGCTTGCCAAATGTATAAATACTACGATCCATGTACAACT
GTTTGCAGGACAAAAATGTCattctaaaattttaaacatgtacgTTAACA
CCAAATTATTGAGCAATTTTAATTTTAGCAACCAGAAATACCAGGGCTAA
AAAAACACAGTAATCTCTCAGAGTTTTTTATAACTCAATTCAACGAAAAT
GAAGTTCATCCCATAAATTGGTTGATGGTACGTTAAATCTCATCTGATAA
ATTCATTCTTCAGTTCGCCAGTGTTGCATCTTTCACAGCGGCAAAAAAGC
AGCTACCATGATGTGATTTGATAAATACCCTTTTAGGTTTACTCGGTTGA
CATTACTGCATGGGCTGTCTGGTGGGGCTGGTTATATAAGACATAGTAGT
CAATCAGCTACTCTTCAAATTGCCATTGGAAAATAATAAGCATgagattt
gttttattttaacaacttctctaaaaataaagaacaaaaagCTCATAATT
AACAGCAACTAAATTTAGGGCTGAAATTAGGACCTTCTGTCTGAGTCTAA
ACAAGTCTAAACATGACTAAAGTCAGTCAAAGGGAAATATAGGCAAAAGT
CAAATCAGATAACCAAAACAACACACCATCCACATCCAGAAAAACATTaa
catttttgatgattttgactgaattagataat Run BLAST on NCBI transcript from alignment at sc0000630:195503..198133- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027493 ID=TCONS_00027493|Name=TCONS_00027493|organism=Clytia hemisphaerica|type=transcript|length=2631bp|location=Sequence derived from alignment at sc0000630:195503..198133- (Clytia hemisphaerica)
TACTGTGTCATAAAAATCTGCTCTCCTACACAAATTTTGTGCCCCTCCTG
TATGCGGTACTGCCCTCTAGAAAATCTGGAAATAACCCAAAAACTTGAAT
GTGTTATTTTTGGAGAATAATTATACTTTTGGGCAAAAATTAGTATTTTT
AATATAATTGATGTAAATTAGCATGCAAGATCTGAAGATAAACTTACCGT
CAATGGCTCTAACTTGGGACAGTTTGATAAAACATGGGACAGCAATTCGG
CCATCATTTTACAGAACCTCCAAAGTCATTTAATTAACATAGTCGCAAAT
CTCATACAAAACAAACTTTGTTGTCAAGAGAGATTTAACAGTAAGTGAAA
ATGCATACCAGAAAGTCAACCATCCCATTATATGACCACTCGTCCCAAGT
TAGAGCCGTTGACGGTACACAGGAAAAAATTCAGAAAAATTCCTTGTGAC
TTTTTAGTGAATTCACATTGAAACTAGGTGAAAAGTTGCAACCTTTCTAC
AATTCACAGCTTTTTTGAGTGAATTATTGAATGATTGCAGCTTTTCAACA
TGAATTCACTAAAATGTCACGGTGATTTTCTCGTAAATCTTATCATTTGA
TGTCCACAGTATAATTAGCCTGGATATCCAAGCTCAAAATTTAAGAAAAA
ACAAAATTTACCTCAACATACAAAGTTCTTAAATTATAGAGCTTGGTCTC
CCNAATTTAAATTTTCTCAAATCGATTTTTCACTATTTAGACGTCATAAA
AGGGGGTATTTCAAACATTTTCACCTTAATTTTAATCCTTGAAATCCATC
ATGCCAAATTAAATTCCCGCCAAAATTCTTCCTTTAATGTAATTTCAATA
TTACAATTTTTTCTATTCTCTGTAAAAGATTACCTGTTACCATTACGGTA
GCATTATTTTTTTTTGTTCAGTATTCTTGAATGGAAAAAATCTAATCTTG
ACAAAATCAATTCCAGCAGAAAATCTTACTATTTCACGAAATTATAATTT
CCATCATGCAAAATTTTTGACTTTGATACAAGATTCTTGCAGAATCCCTC
CAGTAGCGTAGACAAAAGGGGCGCAAAATTTGTGTAGAAGAGCAGACTTT
CATGGCATAGTAATTATCTATTCATAATATAAAAATATAATTACTGTGCC
ATAAAAATCTGCTCTCCTACACAAATTTTGTGCCCCTCCTATCTGCGGTA
CTGCCCTCTAGAAAATCTGGAAATAACCCAAAAACTTGAATGTGTTATTT
TTGGAGAATAATTATACTTTTGGGCAAAAATTAGTATTTTTAATATAATT
GATGTATATAAATTAGCATGCAAGATCTGAAGATAAACTTACCGTCAATG
GCTCTAACTTGGGACAGTCTGAAAAAACATGGGACAGCAATTCGGCCATC
ATTTTACAGAACCTCCAAAGTCATTTAATTAACATAGTCANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTGCAACCTTTCTACA
ATTCACAGCTTTTTTGAGTGAATTATTGAATGATTGCAGCTTTTCACCAT
GAATTCACTAAAATGTCACGGTGATTTTCTCTTAAATCTTATCATTTGAT
GTCCCCAATATAATATATAAACAATGGCCATATTATTGCAAAAATCCTTT
CAGTGTCTTTGCTTGCCAAATGTATAAATACTACGATCCATGTACAACTG
TTTGCAGGACAAAAATGTCATTCTAAAATTTTAAACATGTACGTTAACAC
CAAATTATTGAGCAATTTTAATTTTAGCAACCAGAAATACCAGGGCTAAA
AAAACACAGTAATCTCTCAGAGTTTTTTATAACTCAATTCAACGAAAATG
AAGTTCATCCCATAAATTGGTTGATGGTACGTTAAATCTCATCTGATAAA
TTCATTCTTCAGTTCGCCAGTGTTGCATCTTTCACAGCGGCAAAAAAGCA
GCTACCATGATGTGATTTGATAAATACCCTTTTAGGTTTACTCGGTTGAC
ATTACTGCATGGGCTGTCTGGTGGGGCTGGTTATATAAGACATAGTAGTC
AATCAGCTACTCTTCAAATTGCCATTGGAAAATAATAAGCATGAGATTTG
TTTTATTTTAACAACTTCTCTAAAAATAAAGAACAAAAAGCTCATAATTA
ACAGCAACTAAATTTAGGGCTGAAATTAGGACCTTCTGTCTGAGTCTAAA
CAAGTCTAAACATGACTAAAGTCAGTCAAAGGGAAATATAGGCAAAAGTC
AAATCAGATAACCAAAACAACACACCATCCACATCCAGAAAAACATTAAC
ATTTTTGATGATTTTGACTGAATTAGATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027493-exon-sc0000630-1575043694:197533..198133 | TCONS_00027493-exon-sc0000630-1575043694:197533..198133 | Clytia hemisphaerica | exon |
| TCONS_00027493-exon-sc0000630-1575043694:195503..196233 | TCONS_00027493-exon-sc0000630-1575043694:195503..196233 | Clytia hemisphaerica | exon |
| TCONS_00027493-exon-sc0000630-1510915933:197533..198133 | TCONS_00027493-exon-sc0000630-1510915933:197533..198133 | Clytia hemisphaerica | exon |
| TCONS_00027493-exon-sc0000630-1510915933:195503..196233 | TCONS_00027493-exon-sc0000630-1510915933:195503..196233 | Clytia hemisphaerica | exon |
| TCONS_00027493-exon-sc0000630-1491911889:197533..198133 | TCONS_00027493-exon-sc0000630-1491911889:197533..198133 | Clytia hemisphaerica | exon |
| TCONS_00027493-exon-sc0000630-1491911889:195503..196233 | TCONS_00027493-exon-sc0000630-1491911889:195503..196233 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000630 | supercontig | sc0000630:195503..198133 - |
Blast
The following BLAST results are available for this feature:
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