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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027582 ID=TCONS_00027582|Name=TCONS_00027582|organism=Clytia hemisphaerica|type=transcript|length=2259bpRun BLAST on NCBI protein sequence of TCONS_00027582-protein >TCONS_00027582-protein ID=TCONS_00027582-protein|Name=TCONS_00027582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp MTLKRVLSIQSHVVSGYVGNKSATFPLQVLGFDVDAVNSVQLCNHTGYKCRun BLAST on NCBI transcript from alignment at sc0000635:73019..85642- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027582 ID=TCONS_00027582|Name=TCONS_00027582|organism=Clytia hemisphaerica|type=transcript|length=12624bp|location=Sequence derived from alignment at sc0000635:73019..85642- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000635:73019..85642- >TCONS_00027582 ID=TCONS_00027582|Name=TCONS_00027582|organism=Clytia hemisphaerica|type=CDS|length=9999bp|location=Sequence derived from alignment at sc0000635:73019..85642- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027582 vs. Swiss-Prot (Human)
Match: PDXK (Pyridoxal kinase OS=Homo sapiens GN=PDXK PE=1 SV=1) HSP 1 Score: 331.257 bits (848), Expect = 2.835e-106 Identity = 154/307 (50.16%), Postives = 227/307 (73.94%), Query Frame = 2
Query: 410 RVLSIQSHVVSGYVGNKSATFPLQVLGFDVDAVNSVQLCNHTGYKCFQGQVLLANELKTLFDGLKKNDIHFYSHLLTGYCGDPTFLREICQVYKQLKEKNKDLIYVCDPVMGD----DGKFYVPQELLPIYRDEVVPFADVLTPNQFEAELLTGMKIKNEEDAFQAMKALHVKGPETVVLTSTHF---ENKPNLVLMASNKND------LKQYIKLQIPRLDAVFTGTGDLFASMLLAWSHNHPNDLKLSCEKTLSAIQSILKKTLDSAKELCGEGEKPQAHQIELKLVQSLDIIRGPQIQYEATFV 1291
RVLSIQSHV+ GYVGN++ATFPLQVLGF++DAVNSVQ NHTGY ++GQVL ++EL+ L++GL+ N+++ Y ++LTGY D +FL + + ++LK++N L+YVCDPV+GD +G YVP++LLP+Y+++VVP AD++TPNQFEAELL+G KI ++E+A + M LH GP+TVV+TS+ + L+++ S + + + I++ I ++DAVF GTGDLFA+MLLAW+H HPN+LK++CEKT+S + +L++T+ AK GEG +P Q+EL++VQS I P+I +AT +
Sbjct: 6 RVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSTLHHVLQRTIQCAKAQAGEGVRPSPMQLELRMVQSKRDIEDPEIVVQATVL 312 The following BLAST results are available for this feature:
BLAST of TCONS_00027582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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