TCONS_00027994 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027994
Unique NameTCONS_00027994
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027994 ID=TCONS_00027994|Name=TCONS_00027994|organism=Clytia hemisphaerica|type=transcript|length=390bp
TCCTGAGCGTTTAGATGAAGATAATTCTGTTATGGGGATAGATGAAAATC
CGGCAATCGAGACCAAACTAAATGAGACAAGttcaaacaacaaaaccacA
AGTAAACATCCATCCGAAACGGAAAACATGAGTACAGACGAGAATCGAGA
AcataaaatcaaaccaaaaattGCAGATCATAATCTTTCAAATCATAACA
AGAcaacaatcagccacaatcaaaCGAAACCGTATTCTCAAAACGGGACA
AATATGACGAAACTGGATTCAAATTTCGGACAAAATCATGCAAAGCTTGG
TAAAGAAATCGGGNttttgcttatatcagcataatataacaataggcaga
cactgtcctgatatgaaatatgtgtctgatatgaaacgag
Run BLAST on NCBI

protein sequence of TCONS_00027994-protein

>TCONS_00027994-protein ID=TCONS_00027994-protein|Name=TCONS_00027994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
PERLDEDNSVMGIDENPAIETKLNETSSNNKTTSKHPSETENMSTDENRE
HKIKPKIADHNLSNHNKTTISHNQTKPYSQNGTNMTKLDSNFGQNHAKLG
KEIGXLLISA
Run BLAST on NCBI

transcript from alignment at sc0000660:176937..177326

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027994 ID=TCONS_00027994|Name=TCONS_00027994|organism=Clytia hemisphaerica|type=transcript|length=390bp|location=Sequence derived from alignment at sc0000660:176937..177326 (Clytia hemisphaerica)
ctcgtttcatatcagacacatatttcatatcaggacagtgtctgcctatt
gttatattatgctgatataagcaaaaNCCCGATTTCTTTACCAAGCTTTG
CATGATTTTGTCCGAAATTTGAATCCAGTTTCGTCATATTTGTCCCGTTT
TGAGAATACGGTTTCGtttgattgtggctgattgttgTCTTGTTATGATT
TGAAAGATTATGATCTGCaatttttggtttgattttatgTTCTCGATTCT
CGTCTGTACTCATGTTTTCCGTTTCGGATGGATGTTTACTTgtggttttg
ttgtttgaaCTTGTCTCATTTAGTTTGGTCTCGATTGCCGGATTTTCATC
TATCCCCATAACAGAATTATCTTCATCTAAACGCTCAGGA

Coding sequence (CDS) from alignment at sc0000660:176937..177326

>TCONS_00027994 ID=TCONS_00027994|Name=TCONS_00027994|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0000660:176937..177326 (Clytia hemisphaerica)
ttatgctgatataagcaaaaNCCCGATTTCTTTACCAAGCTTTGCATGAT
TTTGTCCGAAATTTGAATCCAGTTTCGTCATATTTGTCCCGTTTTGAGAA
TACGGTTTCGtttgattgtggctgattgttgTCTTGTTATGATTTGAAAG
ATTATGATCTGCaatttttggtttgattttatgTTCTCGATTCTCGTCTG
TACTCATGTTTTCCGTTTCGGATGGATGTTTACTTgtggttttgttgttt
gaaCTTGTCTCATTTAGTTTGGTCTCGATTGCCGGATTTTCATCTATCCC
CATAACAGAATTATCTTCATCTAAACGCTCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015844XLOC_015844Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027994-proteinTCONS_00027994-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027994-exon-sc0000660-1491911889:176937..177326TCONS_00027994-exon-sc0000660-1491911889:176937..177326Clytia hemisphaericaexon
TCONS_00027994-exon-sc0000660-1510915933:176937..177326TCONS_00027994-exon-sc0000660-1510915933:176937..177326Clytia hemisphaericaexon
TCONS_00027994-exon-sc0000660-1575043694:176937..177326TCONS_00027994-exon-sc0000660-1575043694:176937..177326Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000660supercontigsc0000660:176937..177326 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0714593	0.29107	2.70472	0	0	0	0.631577	0	0	0	0	0.225311	0	0.194621	0.430202	0.947856	0.476174	0.717496	0.134835	3.10352	2.36339	0.871465	1.483	0.852869	1.92536	0.928564	1.58892	1.33801	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top