TCONS_00028100 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00028100
Unique Name	TCONS_00028100
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1754

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000664:92785..98898+

transcript sequence

>TCONS_00028100 ID=TCONS_00028100|Name=TCONS_00028100|organism=Clytia hemisphaerica|type=transcript|length=1754bp
CTTCACATAATGAATCTGTGTACTTATCTTGCAAAAAGCAatgcaaaatt
tcttcttttacaaTATGAACCGTTCGTGTCTATTTCTTACTTAACACTTT
TAACGTCACAATTCGAAATTAATGCTCTGCATTgtgtgattttgaaaaaa
agatattCTATTCTACAATAAAAAGCGCGCGCTGTTTTGCTGCGATGAAT
CGTTTAAAAAACTGCAAtgtttttgcaaggtcagcATTTTTTCATATCAA
TTTAGACCTCATTTTTTATATTGCCAAGTCTGTCTTCAAAGTAGATCCTA
CTtctattttagtaaaataaagaaaaatcaaggaCTGCATTTATCCTTAT
CACTGCTTGAATTCactggaataaaaatgtcagtGTTGGATTTGTTTGAA
GAGAAAGATGTCGTTAAAGTATGTGCACCCATGGTTAGATATTCAAAACA
AGCGTTCCGTCACTTAGTTCGAAGTTATGGTTGCGATATAGCCTATACAC
CGATGATCATTTCAGAATCGTTTGTCCAGTCTAAGAAAGCCAGAGATGTC
GAGTTCACCACTAATGCAGaggATCGGCCATTGATTGTGCAATTTGCAGC
TTCCAAACCTAAAGATTTTGCTGATGCTGCAGAAATGGTCAAACCATACA
GTGACGGTGTAGGTTTGAACTGTGGTTGCCCACAGCGTTGGGCAATGGCT
GAAGGTTATGGATCCTATCTGATGGAGCACGGTGAATTAGTCAAAGACAT
TGTCCTTCAAACCAAGCAACGCGTTGGATTCGAATTCCCCTGCGAAGTGA
AAATCAGAATACATAAAGATAGCAGAAAAACCATTGAGTTTTGTCAACGA
GCGGAACGTGCTGGTGCTGATTGGATCACTGTTCATGGAAGAACCCCCAA
AGAACGAAAAGAACCTGTTCACTATGATGTCATTAAATTGATCAAAGAAT
CGATCGGCATACCGGTGGTTGCTAATGGTGATATCAAATCTGAAGAAGAT
ATTCTCAAAGTCAAAGAGCTGACCAACGTTGATGgaGTGATGGCAGCTCA
AGGGATGCTAAACAATCCAGCAATGTATGCTGGGTATGACATCACACCAA
TGCAGTGCGTTGAAGACTGGATGGACATAGCATTACGATTGGGGACGCCA
TTTCGAACATTTCACCACCACCTTATGTACATGACAGATAGCTGGCATAC
TAAATCTGaaCGTATGGTGTTCAACAACCTTTCATCAGTACctgctgttc
ttaattttctcGAAGTGCATTATGGTATCACGTAATGAAAACAGAAAGAA
AGTCTAGAAGATACTTCGATCGAAATAAAGAGAATTATAATTTTCGTATT
CTTACAATAAACTACTTTGGCTTTTGGTATGAAGAAAATATGGACTAGAC
AATCGATTTGGGTGCATCTCACTAATGCGACACTTTATAGTCCGACAACA
AAACAGTCCAAATCAAGACGGATTGAAGCAGTCCGACAGTACGTTGACTC
AGACAAATTTTATCATGCAAATACAATCGGACGGTCTCAAATcacgattt
tcattttttttaacggTAAATGCTTCTTCATATTTGATCCGAGGAAACAA
AATTTACTTTATCTTACAGCCAAGGATGTTTTTTCTCGAGAACACTATTA
TTATAGTACAATATCTTTTTTAACTTTGTACACcattttaatcgaacttt
ttagattgttaagaattttatttttgaaaaaagataccCAGCTAAAAATT
CAAC

Run BLAST on NCBI

transcript from alignment at sc0000664:92785..98898+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00028100 ID=TCONS_00028100|Name=TCONS_00028100|organism=Clytia hemisphaerica|type=transcript|length=6114bp|location=Sequence derived from alignment at sc0000664:92785..98898+ (Clytia hemisphaerica)
CTTCACATAATGAATCTGTGTACTTATCTTGCAAAAAGCAatgcaaaatt
tcttcttttacaaTATGAACCGTTCGTGTCTATTTCTTACTTAACACTTT
TAACGTCACAATTCGAAATTAATGCTCTGCATTgtgtgattttgaaaaaa
agatattCTATTCTACAATAAAAAGCGCGCGCTGTTTTGCTGCGATGAAT
CGTTTAAAAAACTGCAAtgtttttgcaaggtcagcATTTTTTCATATCAA
TTTAGACCTCATTTTTTATATTGCCAAGTCTGTCTTCAAAGTAGATCCTA
CTtctattttagtaaaataaagaaaaatcaaggaCTGCATTTATCCTTAT
CACTGCTTGAATTCactggaataaaaatgtcagtGTTGGATTTGTTTGAA
GAGAAAGATGTCGTTAAAGTATGTGCACCCATGGTTAGATATTCAAAGTA
GGTACATTCGAATGAGACCTTCTATTTCAATCTAAGTGCGTGCTCATAAT
CAAAACGAACCTGATTTTCCCTAAATTGGcttgcttttttaaaccaacTT
CCAACTATTAGAATGTACACAGTTGACTTAAAAATTGGGCCTAAACAGCA
TTTTCGTAGTCATTCCTAAATGCTAAGGCTCGGATTGTTCTTATTTAGTT
CTTAAGTTTTACCCAAAAGTGAGTCtcgtgttttgaaaatttttgttata
aaaCAGCACATGAAAGTAATTGttttttctaattctttttTTCCAGACAA
GCGTTCCGTCACTTAGTTCGAAGGTACGATCCATTCccgattttttcatt
tttatttattgaacaattatcaaaacaaaccctATACACTCTAGTTAGAA
AGAATTGGAATTGAAAGAATTCATCAGATATttaaaaatcagccatttta
gGCTTTGAATCGTTCCTAAATTCTTCTGTTCTTTGGGGTTTTTGAGCCAA
ATTGATCTTCAAATTGTTCTAAAACAAAGGATTGtattgaaaataaggaa
aatataCTGTAAGAGCGTAGTCACATATCTTCTGAAAATGGTTAAAACTT
CATTTTGTTCCCTAACCCCGAACTCAGAAAATTGAATCTTGTTTCTTGAA
GGGAATGAGATAGCgctcagaatttttttttcattacagTTATGGTTGCG
ATATAGCCTATACACCGATGATCATTTCAGAATCGTTTGTCCAGTCTAAG
AAAGCCAGAGATGTCGAGTTCACCACTAATGCAGGTGTGATTGATACTGC
GCTtttcctgaagaaaaaaaacgtacATCCCccatcaattaaaaaaattg
caaaaattaactATACTTTTTCAAATCCTACATACAGCCGTGCCGAATTC
CACATTAAGCTGCCACCAAGTTTCAGTTACAACTTTTATAAAGTCTAATT
TGCTGCTCTCACATAATTTGAGATACCATTGTTTTGCATTGAGAATCTAA
ATGCGCAATATTTTGTCATATTTTGACATGAGTGAGTTTATGTTTTGGCG
CTTTTGAGGACGGCAGTGTGACTGAAGCGATTAGGAATAACCCGCTGATT
TTCTGTCGTCCTCAGCtaatcaggatctagacaagtCAGAAGCgaaccgt
ctccgtcgcagaaacaCACTCATACGTAAAATCGCtaatgtttcttagtt
tttttatttcagaggATCGGCCATTGATTGTGCAATTTGCAGCTTCCAAA
CCTAAAGATTTTGCTGATGCTGCAGAAATGGTCAAACCgtgagtgaaaat
gatagtaTAAAACAAAGCATTTGATCGACCTCTTAGTTGTCAGATTGGAG
GTGTTCCCCAAGTGGAGGGGTTTTTTTTGTAGAGGATTGGTTTGCATGAC
ATCGAATATCATCAAAAGATTCTTTAATTTGTTGACCGCGCATGAAGCAT
TAGGGATAAGTCAATATTCGAAGCCGAGCATCTAGTCTTTACAATTCAAT
TATAAAACATTGAAATCTACTGTATATCTTTCTTGAAAGGAGGTGCGAGG
CAAAAACTATAAGTAAAAGTGTCGCCATCGATGATTTCTTCCTTTCGTTT
TGTTCttcgaatttttttatatttccatCCTATTTTAATACATTTAGATA
CAGTGACGGTGTAGGTTTGAACTGTGGTTGCCCACAGCGTTGGGCAATGG
CTGAAGGTTATGGATCCTATCTGATGGAGCACGGTGAATTAGTCAAAGAC
ATTGTCCTTCAAACCAAGCAACGCGTTGGATTCGAATTCCCCTGCGAAGT
GAAAATCAGAATACATAAAGATAGCAGGTATTTTGGTTTTTCATAAATAC
TTTGTATCTTTAAACTAGGATAGATTTTTTAGGGTGCTGCTATAAGTATT
ACAAAACATACATAGTACTACCATTTAGAGACTAAAATCTAATCAAGAAT
TTCTAAATAATAAAGAAACTCTCTAATAAAGAAACTAAGTATTGAGAGTT
TGGTctaattttcaatgaaattccctctgaaaaaacctttttaaacaatc
CGCCGATTTAAACCCCCATTAAAGTTCTTCCTTTAAGGTCCTCACGTTAT
ACGTGAGATGCACTTTGGTATAGATTATACTAGTAAATGGTGCTAAAATT
ATTTTAGCTTAGTGCTAAGCTTTTGATAGGTTGGATCTTTTATAAAAGAA
TTGACCCCTCCCTGTCTAACGAAAAGGGAACCTCCTCTTTAGTTATCAAG
TTTAGGGGAAACATTGATCACAATTTTGCAATTGTGTGACGTTTATGTTA
ATTTATTATTCTTTACTTACAGAAAAACCATTGAGTTTTGTCAACGAGCG
GAACGTGCTGGTGCTGATTGGATCACTGTTCATGGAAGAACCCCCAAAGA
ACGAAAAGAACCTGTTCACTATGATGTCATTAAATTGGTGAGAGATTTAC
CTTATCAAATCGCTATTTTATTGgcttaaattttaaaattttatttccat
TCCTATTTAACTTTGGTTGTCAAATCTGCTAACACCACAAAGTTTACCCT
TTACTAGGTTTTTTAGTACGTAGTGATGTCTTTTGCAATACAAGCAACAT
GTANgaaatttgtgattttttttttacttttgaaaaaaatgttttgaatt
tttttgcttccggaatctttaaaaacctaaaattttaagtgaaaaattga
aaaatatgtgctcacttagtacaccatatcctaccaaaatcgacaatttt
gggcttaggcaccacccatgtNGACTGATCTTGTTATTTTCATAATCCCA
TTATCATTAGATCAAAGAATCGATCGGCATACCGGTGGTTGCTAATGGTG
ATATCAAATCTGAAGAAGATATTCTCAAAGTCAAAGAGCTGACCAACGTT
GATGGTAAGGGTAAAAGTGTTAAGTCTTTTTGAAGGGTGGAACCCCTCGC
CTCGGATTGTCTATATATATAGACCCTTAATTATAACATTTTCTATTGTG
TAACTTTTTGATGCCGTAATAACACATACAAACTTAAAAGCAGGATAGTC
CAAAGATTCTTCATACTATGAAAGGATCACAAGTTAatttttactttgat
ttcatttcattttataaaaattcatGAAANTTACTAAATCATTTATAGTT
ATTTTAGTGATCTTTTTTATGGTCTATGACTTTTTGGAACTAAGGTATTA
GATGACAAATTAATGAAGGACAAAATAGTAACTAGTGTacatataatgaa
tgaactcTCAATAAGCACGGTAAAACCTTTTGTTTGACAAAGAACATATC
AtttccttttttgatttttattttaggaGTGATGGCAGCTCAAGGGATGC
TAAACAATCCAGCAATGTATGCTGGGTATGACATCACACCAATGCAGTGC
GTTGAAGACTGGGTAAGAGAGACTGAACTTCAATTCAGGCCACcactatt
ttgaccctttcaaACTAACATTCAAAGATCGAGCGTATTTTGAATTAACC
CTTTAATTATACTTGAAGAAAGAATCCTTCCCGTTGAAGTAACCCCCTCC
CTCCCTACGAAAGTAGgcgaatgaaaaaaaatttccctacaaactttctg
aaaaagaaaagacaaatatgtttttaaaattacaaCCAATGAAACTTGGA
CAAATGCCTCTCAGTTTATATTGCAGTCTCTTGTAAGAACCCCTTTTCCT
CCCCTAGCAATGCTCCTCTAAAGGTACCGACCACGTTTGTAAATTGGAAC
TTTAAATACATCGCTTGTGTTTCGATAACATGTAAGATCATTGAGGGAGT
ATGAGGGCGCTCGAAAATAAACGCCGCTGCCTGATTTTTGTCTTACGTTT
GAAAGGTTCAGTAGGGCTGCCCTCCCTCGTTTGATTTCAAGCTTTCATTT
CTTTAATTCTCGGAGCCTTCAAAGAAATATGTAAAGAATAGATAGCTTTT
TGATAGCACATCTATCAACCCTTAATTCCGCAGTCAGCTTCTAGGAGAAC
TGGTTGATGAATTGACAAGGAAATGACGTCAGAATTTGTTGTCTTTGAGA
ATTTTAATGGCATGATTTCAGACATTTTGAAGTCATGGCTTCTTGTCAAC
CTGGAAGCCAGTCCATGCTTTAATGGTTGATGTGTGAATTGGTTACTTGA
TATTTTCAGATGGACATAGCATTACGATTGGGGACGCCATTTCGAACATT
TCACCACCACCTTATGTACATGACAGATAGCTGGCATACTAAATCTGGTA
TTAACTTTTTCGTTAATTCCGAATAGAGCTCAAATACTTCTGTTCTAGAT
TGACTGTAATGCTGCTGCCGccatcatagatttataaagcccgaagtgct
agatgtcgtgctttaagccatcacaggcaaaaaaagtgaatatcggaaaa
aatattgttgctattgttgctattgtttttgaaaacccgtGAAGCTTcag
attggtcaagcgctgaaattctattgtaatgtcacgtgacctaggtaaag
tttcctacctaaccacggcacactttacaGCAGAAATACAccatctagtc
cttcgggctttataaatataGGGCTGCCACCCGTATTTCTCATCCACCGA
TATGTAAAAGATCATAAAACTTTTTGTTGTGATACCGTTTGCTCTAGCCC
TATAGTAAAGCTAAAGGATTTTATGTGAATTTTACCCGCTACTGTCAATC
TATCTAATGATGGCCTTGGATATATCCTACCATTTCGCCAGAGTCGGTGT
TTTcgttactttttaattttatttagaaCGTATGGTGTTCAACAACCTTT
CATCAGTACctgctgttcttaattttctcGAAGTGCATTATGGTATCACG
TAATGAAAACAGAAAGAAAGTCTAGAAGGTATATCTTTCAATGACATCct
aatttttaatttgaagttggcattgttgtttttttgtgatttttttcaca
ttgtATTTTTTTCGGGCTAAATGTTAAATGAGTCTGAGAAAAACAATATG
GTGAACATATGAAGAAATTCATTCATTGCTTACTTGGTTTGCACGCTCAA
ATTTATTGGACAATACGCTGGCTTTTATTTCGCTCGTTATCTCACTTTTG
ATAGGAATATTAACCTATGTGGTAATGCCCTTGATATCAATATTGCTTGA
ATTTATTGGAACTTGTTCTACCTGGAGATTAGACTATTTGATTGATAGTT
GAAATGCATTATTCAAACAGATACTTCGATCGAAATAAAGAGAATTATAA
TTTTCGTATTCTTACAATAAACTACTTTGGCTTTTGGTATGAAGAAAATA
TGGACTAGACAATCGATTTGGGTGCATCTCACTAATGCGACACTTTATAG
TCCGACAACAAAACAGTCCAAATCAAGACGGATTGAAGCAGTCCGACAGT
ACGTTGACTCAGACAAATTTTATCATGCAAATACAATCGGACGGTCTCAA
ATcacgattttcattttttttaacggTAAATGCTTCTTCATATTTGATCC
GAGGAAACAAAATTTACTTTATCTTACAGCCAAGGATGTTTTTTCTCGAG
AACACTATTATTATAGTACAATATCTTTTTTAACTTTGTACACcatttta
atcgaactttttagattgttaagaattttatttttgaaaaaagataccCA
GCTAAAAATTCAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_015899	XLOC_015899	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000664	supercontig	sc0000664:92785..98898 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33546	1.58571	0.420985	0.629372	7.44594	6.56141	4.65206	3.26367	1.23871	1.34721	1.08958	1.6693	0.966326	0.848158	2.15174	3.81016	1.43219	3.30373	0.1944	1.16853	1.57617	1.98096	5.451	4.78033	0	0.307249	2.57224	1.15519	2.12739	3.2092

Blast

[Close]

BLAST of TCONS_00028100 vs. Swiss-Prot (Human)
Match: DUS4L (tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS4L PE=2 SV=2)

HSP 1 Score: 370.933 bits (951), Expect = 1.364e-123
Identity = 169/299 (56.52%), Postives = 224/299 (74.92%), Query Frame = 2

Query:  386 LDLFEEKDVVKVCAPMVRYSKQAFRHLVRSYGCDIAYTPMIISESFVQSKKARDVEFTTNAEDRPLIVQFAASKPKDFADAAEMVKPYSDGVGLNCGCPQRWAMAEGYGSYLMEHGELVKDIVLQTKQRVGFE-FPCEVKIRIHKDSRKTIEFCQRAERAGADWITVHGRTPKERKEPVHYDVIKLIKESIGIPVVANGDIKSEEDILKVKELTNVDGVMAAQGMLNNPAMYAGYDITPMQCVEDWMDIALRLGTPFRTFHHHLMYMTDSWHTKSERMVFNNLSSVPAVLNFLEVHYGI 1279
            +++F    +VKVCAPMVRYSK AFR LVR Y CD+ YTPMI++  FV+S KARD EFTTN  D PLIVQFAA+  +  +DAA +V PY++G+ +NCGCPQRWAMAEGYG+ L+   ELV+D+V Q + +V    F   +KIRIH D ++T++ CQ+AE  G  WITVHGRT +ER +PVHYD IK+IKE++ IPV+ANGDI+S ++   V  +T  DGVM A+G+L NPAM+AGY+ TP++C+ DW+DIAL LGTP+  FH HLMYM +   ++ E+ VFN LSS  A++++L  HYGI
Sbjct:   19 IEMFHSGQLVKVCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQPVHYDSIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVDIALELGTPYMCFHQHLMYMMEKITSRQEKRVFNALSSTSAIIDYLTDHYGI 317

The following BLAST results are available for this feature:

BLAST of TCONS_00028100 vs. Swiss-Prot (Human)

BLAST of TCONS_00028100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DUS4L	1.364e-123	56.52	tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-li...	[more]

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TCONS_00028100 (transcript) - C. hemisphaerica