TCONS_00028125 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028125
Unique NameTCONS_00028125
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028125 ID=TCONS_00028125|Name=TCONS_00028125|organism=Clytia hemisphaerica|type=transcript|length=422bp
AACGACTAAACTTtgttttatctttgttttttaaagactttttgaaaTGC
ATTTATGGATTTTGTAGAGCGTTCTGCACGTTGAAAGTCGAGTTCGAAAC
AACAATTGAGCTTTCCACGTTTGACGtcacaatcaatgatgaatggAATT
TACAGAGAGTTCAACGGAGAAACAAAGGATCTGGTTTTTGTGGCTTGACG
AACATTCAATGTGGAAAAGtgaaagcaattggtcaatGGACCAATAAgAT
TTGGTTTTTGTGGCTTGATGACATTCAAAGTGGAAAAGGAAACAGTTGGT
CAAGGCTCTACACTTAAGAAAACTTCTTGGATGGACGTGATGAATGGTAT
GCAAAGCAAATTTTGGATGACCTGAAGTTAAGAACTTAAAGTTTCCATCG
ATTATGCTGACTGCATGGTTCA
Run BLAST on NCBI

protein sequence of TCONS_00028125-protein

>TCONS_00028125-protein ID=TCONS_00028125-protein|Name=TCONS_00028125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
RLNFVLSLFFKDFLKCIYGFCRAFCTLKVEFETTIELSTFDVTINDEWNL
QRVQRRNKGSGFCGLTNIQCGKVKAIGQWTNKIWFLWLDDIQSGKGNSWS
RLYT
Run BLAST on NCBI

transcript from alignment at sc0000665:13842..16623+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028125 ID=TCONS_00028125|Name=TCONS_00028125|organism=Clytia hemisphaerica|type=transcript|length=2782bp|location=Sequence derived from alignment at sc0000665:13842..16623+ (Clytia hemisphaerica)
AACGACTAAACTTtgttttatctttgttttttaaagactttttgaaaTGC
ATTTATGGATTTTGTAGAGCGTTCTGCACGTTGAAAGTCGAGTTCGAAAC
AACAATTGAGCTTTCCACGTTTGACGtcacaatcaatgatgaatggAATT
TACAGAGAGTTCAACGGAGAAACAAAGGTATGATTATTTTAGCCAATCAA
CTGTGGGATTAGATTTTTCATCAACTACAATCGACGCCGAAAAAATTGGC
ATAAAAGGGGTATTACCTTAAAACTTTAAACtgtaagtgatttttaagtg
ctttaatGTACGGTTAGAAAGTAGACTTTTAACCCTGAGTTTCAACACTA
TAGAAGCTTAGAATCTCACACATCTCAGGGTCTAAAAGCTCAAGAATGTT
CCAATATGGCTGAAAACATAGcatggaagccacttaaccacTCCACTgga
acaaagtggaagtactgaaattacaattctcgcccgagctttaaattcta
gaaaacgttaaaatacccaaaaattgccaatatatttcggcgctgattgt
agCAAAGAAAATGGTTTGTAGAGTATACGCAAAGATCACCGAACTCGATT
TTTGATAGAAGATANtccaaaattgccaatatatttcggcgctgattgta
gCAAAGAAAATGGTTTGTAGAGTATACGCAAAGATCACAGAACTCGATTT
TTGATAGAAGATAATGTATTCATTTTTAGCTGTGTTATTTTTCGATTGTT
GATTGTTTCGGCAATTTCACCATCAACCAAAATGTAGTTTGACCTTTTAC
CAAATGGTGAAGTTTAATCGTGTATGAAATCTATTCAATATTATAAATCA
CAATTTTCAGGATCTGGTTTTTGTGGCTTGACGAACATTCAATGTGGAAA
AGtgaaagcaattggtcaatGGACCAATAAGTAAGACCATATTTATCTTG
GAAGACACTTAATTGAACTTTGATTGATATTATTTgcttattggacctac
ctagagatcctataaattaacctgtgttcgtccgttcgtctattcgttcg
ttcgtctgttaccaaatTTTCTCGgaattgaatcataggaattttgTGAA
CCAGGCTTCTTCATAATCTCTCTTTTTTGTTTCGAGCGTAACACTCTTAC
TCTTTGGGATTTAGAGAGTTTCGAACCTACACATTAAGCCAATCatctgt
gttttaaacattcttttactTGACCCAGTGCTGAAGTTAAATCTTAAACG
AAATCTATATAAATCACAATTTTCAGGATTTGGTTTTTGTGGCTTGATGA
ACATTCAACGTGGAAAAAGAAACAGTTGGTCAAGGCTCTACACTTAAGAA
AACTTCTTGGATGGGTAAGACTTCATTCNCTCAACGTGGAAAAGGAAACA
GTTGGTCAAGGCTCTACACTTAAGCAAACTTCTTGAATGGGTAAGACCTT
CATATTGGAAGATATTTTATTGAACTTTCATTAACGTTAATTGCTTTTTC
TGAACAAAACTAGGCTACCtttgtttcgagcgtaaaactcttCCTCTTTG
GGATATAGTGAGTTTCAAACCTATGCATTAAGCCAATCatctgtgtttta
aacattcttttatttgaccCAATGCTGAAGTTAAGTCTTAAATGAAATCT
ATAtaaatgacaattttcaggATTTGGTTTTTGTGGCTTGATGACATTCA
AAGTGGAAAAGGAAACAGTTGGTCAAGGCTCTACACTTAAGAAAACTTCT
TGGATGGGTAAGACTTCATTCatcattattttttaataaaactaggctac
gtcatattcCCCTTTGTTTCGAACGTAAACTCCTACATACTCTTCAAAAC
TAAGGTCTAAAAAACTAGGAGCTGtgtattgtgtagactagaacATAACC
AGGCTTAAGAAACAACATCGAACAAACTGGATAAACTTAACACCTCGTAA
AATGTTCTCATTCCATGCAAAAAGTAATAGTAGTTGCaaaactttttaat
caaacccatATTACTTACTCTTAGATTTGACAGACGTGATGAATGGTATG
CAAAGCAAATTTTGGATGACCTGAAGTTAAGAACTTAAAGTAAGAACTTA
TTGTTATCTATTTTCAGccgaaaatttgaccaaatctATCATATTGTTGT
CAGTCGCACCTTGGAAACAGAAGCTTTCATCTTCTCAgttggaaaaagtt
ccaccggggctttgaTGTAGCTGCGTATGTTTCAAATTCGATACATGGTA
ATAAAAAATGCCTATCAGATTTTGCATAAGGTTTTTCATTCCTGTTGATT
CATATAGTTTGACATATTTTNCTTTTCATTCCTGTTGATTCATAtaattt
gacatatttttataagaaactcaaTTTTAGCTTCCGTCCTGCTTTTGCTT
AGCTTTCTAGCTCTATGTTTGAAACATTTGGTGCGATCACCCCTGACATT
ATACCATATTAATGCTTATTTGGTTAGGAGCTGtcgtttgccatggttag
atctaaaaaaaattctattacGAGATAATAAAGGCTCAAGCCTAAGCAGT
ctagttgcttataagaaaagaaGTGTGCTCTTTCATGTCTTTCCCCCTTT
TTAATAGAAGAGAAAACACAATGTATCGGACAGTTTTGGACACATTTAGC
AATCAAACTCGTCTACCATTTTGTCTGTAATGataccaaaaataatttta
gtgtCTTTATTCAGCTTTACTAAAACGGTATAATTGTTGTCTTATACTAG
GTTTCCATCGATTATGCTGACTGCATGGTTCA

Coding sequence (CDS) from alignment at sc0000665:13842..16623+

>TCONS_00028125 ID=TCONS_00028125|Name=TCONS_00028125|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at sc0000665:13842..16623+ (Clytia hemisphaerica)
CGACTAAACTTtgttttatctttgttttttaaagactttttgaaaTGCAT
TTATGGATTTTGTAGAGCGTTCTGCACGTTGAAAGTCGAGTTCGAAACAA
CAATTGAGCTTTCCACGTTTGACGtcacaatcaatgatgaatggAATTTA
CAGAGAGTTCAACGGAGAAACAAAGGATCTGGTTTTTGTGGCTTGACGAA
CATTCAATGTGGAAAAGtgaaagcaattggtcaatGGACCAATAAgATTT
GGTTTTTGTGGCTTGATGACATTCAAAGTGGAAAAGGAAACAGTTGGTCA
AGGCTCTACACTTAACGACTAAACTTtgttttatctttgttttttaaaga
ctttttgaaaTGCATTTATGGATTTTGTAGAGCGTTCTGCACGTTGAAAG
TCGAGTTCGAAACAACAATTGAGCTTTCCACGTTTGACGtcacaatcaat
gatgaatggAATTTACAGAGAGTTCAACGGAGAAACAAAGGATCTGGTTT
TTGTGGCTTGACGAACATTCAATGTGGAAAAGtgaaagcaattggtcaat
GGACCAATAAgATTTGGTTTTTGTGGCTTGATGACATTCAAAGTGGAAAA
GGAAACAGTTGGTCAAGGCTCTACACTTAACGACTAAACTTtgttttatc
tttgttttttaaagactttttgaaaTGCATTTATGGATTTTGTAGAGCGT
TCTGCACGTTGAAAGTCGAGTTCGAAACAACAATTGAGCTTTCCACGTTT
GACGtcacaatcaatgatgaatggAATTTACAGAGAGTTCAACGGAGAAA
CAAAGGATCTGGTTTTTGTGGCTTGACGAACATTCAATGTGGAAAAGtga
aagcaattggtcaatGGACCAATAAgATTTGGTTTTTGTGGCTTGATGAC
ATTCAAAGTGGAAAAGGAAACAGTTGGTCAAGGCTCTACACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015915XLOC_015915Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028125-proteinTCONS_00028125-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028125-exon-sc0000665-1491911889:13842..14018TCONS_00028125-exon-sc0000665-1491911889:13842..14018Clytia hemisphaericaexon
TCONS_00028125-exon-sc0000665-1510915933:13842..14018TCONS_00028125-exon-sc0000665-1510915933:13842..14018Clytia hemisphaericaexon
TCONS_00028125-exon-sc0000665-1575043694:13842..14018TCONS_00028125-exon-sc0000665-1575043694:13842..14018Clytia hemisphaericaexon
TCONS_00028125-exon-sc0000665-1491911889:14702..14771TCONS_00028125-exon-sc0000665-1491911889:14702..14771Clytia hemisphaericaexon
TCONS_00028125-exon-sc0000665-1510915933:14702..14771TCONS_00028125-exon-sc0000665-1510915933:14702..14771Clytia hemisphaericaexon
TCONS_00028125-exon-sc0000665-1575043694:14702..14771TCONS_00028125-exon-sc0000665-1575043694:14702..14771Clytia hemisphaericaexon
TCONS_00028125-exon-sc0000665-1491911889:15512..15598TCONS_00028125-exon-sc0000665-1491911889:15512..15598Clytia hemisphaericaexon
TCONS_00028125-exon-sc0000665-1510915933:15512..15598TCONS_00028125-exon-sc0000665-1510915933:15512..15598Clytia hemisphaericaexon
TCONS_00028125-exon-sc0000665-1575043694:15512..15598TCONS_00028125-exon-sc0000665-1575043694:15512..15598Clytia hemisphaericaexon
TCONS_00028125-exon-sc0000665-1491911889:15875..15930TCONS_00028125-exon-sc0000665-1491911889:15875..15930Clytia hemisphaericaexon
TCONS_00028125-exon-sc0000665-1510915933:15875..15930TCONS_00028125-exon-sc0000665-1510915933:15875..15930Clytia hemisphaericaexon
TCONS_00028125-exon-sc0000665-1575043694:15875..15930TCONS_00028125-exon-sc0000665-1575043694:15875..15930Clytia hemisphaericaexon
TCONS_00028125-exon-sc0000665-1491911889:16592..16623TCONS_00028125-exon-sc0000665-1491911889:16592..16623Clytia hemisphaericaexon
TCONS_00028125-exon-sc0000665-1510915933:16592..16623TCONS_00028125-exon-sc0000665-1510915933:16592..16623Clytia hemisphaericaexon
TCONS_00028125-exon-sc0000665-1575043694:16592..16623TCONS_00028125-exon-sc0000665-1575043694:16592..16623Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000665supercontigsc0000665:13842..16623 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.39857	3.49376	1.77236	0.559	1.11025	1.03791	2.99525	3.47769	1.34738	1.47286	2.59025	0.687553	0.696754	0	0.371891	0	0.250075	0	0	0	0	0	2.13016	2.02702	1.81882	0.407711	0	0	0.991047	2.53944
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028125 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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