TCONS_00028244 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028244
Unique NameTCONS_00028244
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1321

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028244 ID=TCONS_00028244|Name=TCONS_00028244|organism=Clytia hemisphaerica|type=transcript|length=1321bp
NTGTGATGAGCGGCAAAGAGAATACAGAAAATATTTATCTGAGCAAATGT
CAAAAAGTGGTAGATCAAACACCCATGTCAATAATGACATTCGAAATGAA
GAGGCACAGcCGATTTCACGCAAAGAAGAGTATCGAAGACAAATTGATCA
GGAGTATAAAGatttattgaagaaaaaacaagatCAAGAAAAAGTATACA
GagTCCAATTTAATGACGACAATGCTGATAAAGGtaATGAAGTCATTGTC
TTAGACAGCCGAGATAATGACCTCATAGAATTGCTGAAATCAAGAAGACG
AGGAAAAAGTGCAGAAACAGAAAGGAGCACTAAATTCAAAGAGATGCGTG
GTGATTCATTGGATTATGGAAGGGCCAATTCTGTTCCTCCAAGTGTCCCA
CCCATTCTTGGAGGAAACAGCAACACTcaattgaataaacaaaaacaaca
gaaaTACAAGTTAGAATTGGAAGaacaaatgaaagaaaatcaattacTGA
AAGCAAAGGAGAAGTTGAAACGGTTAGGACGTGTTACGTCAGATGTGGAC
GTGGCTGAaattgagCTACCGAAAAACAATAAGAACAAATGGGCTTTACC
TGTCCACAACAAGGCAGACACATCTCCTGGCACCGCCACTaccaataaaa
gaaataatagTGAACGATTAGGTGACAAAGAAGTATCTCCGCACCAACTA
CCTCATCAACACCAACAGCCACAGTATCTAGTCAATAACATGCAACAACC
GGTTATCAATCCTTTCTATCAGCAACCTGTTATTCAGCAACAGTACCCTA
TGGGTGGGCTACCACAACCCGGAATGTATCAAGCTCCTACCATGCAAGCG
ATGGGCATGAATCCTATGGGCATGAACCCTATGATGCAATGGCAAATGGC
ACCTTCAGCATATCAACCCATGATGCAACCTGGATTTAACGGCAGTGGTG
GTGCACAACAATTTAAAGGGAACCCCTATCAACAGGGTGCTGGTGGAGGA
GGAGTATATGACACTTTGGATACTGACAGGAAGAATTCAGCCCGCAACAG
AAAACAGTGGGATGTCCCACCACTCGATTTAAACGGATCTGTCAACAAAA
ATCAAaGTAACTTCTCTTCGAGAACACAACACGATTCTTCCACGACATCT
AACAAAATGAACATACCACGTCGGCCGAATNAAGAAAAAGCTTGccgtaa
caagcacaaaatcctatatttctaagggtcccctctcataaaatcatcga
taaatttcaaaaagaattctattacgattaggtaaccttttaattaatca
tccatcagaatttgaaagccc
Run BLAST on NCBI

transcript from alignment at sc0000671:8894..14525-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028244 ID=TCONS_00028244|Name=TCONS_00028244|organism=Clytia hemisphaerica|type=transcript|length=5632bp|location=Sequence derived from alignment at sc0000671:8894..14525- (Clytia hemisphaerica)
NTGTGATGAGCGGCAAAGAGAATACAGAAAATATTTATCTGAGGTATTTG
ATTGTGACAAAATTTCAACCCACAGTTTCTTAATGATTACAACGAAAACG
ACCAAGAATATAGCACTAATTCTTGAAATTATAAAATTTAAGCCTTGGCT
TTCCAGGATTACCTATTTCTTTTTAGCTGAATTCCAACTTCAAGGCCATG
TTGTAACGTACAATTTTTCCTGACAATTCTATCACACAATACTATAGTCT
TATTGTCATCCTCCAAGATTTGTAAATTTGTATCATATCTTTAAAGTGAC
CAATAACTTAGCTTTTCATTTGATATTCCATCATAGCATTGATTATGAAT
AGTAGTGACAAACTTTCATCATCATTTATTTGTAGCAAATGTCAAAAAGT
GGTAGATCAAACACCCATGTCAATAATGACATTCGAAATGAAGAGGCACA
GGTAATTAGTTATTTAAGGGATCTTCTCAAAAATAAATTCGCTTAAATAA
TCGAATTTAAGCGAAAAATTCGCTTAAATAATCGAAGTACTTCGATTATT
TAACAATCGAAACTCGATTATTTAGTTACCTCAGTTCGATTATTTAGTCC
CCTCGGTTCAATTATTTAGTCCCTTCGGTTCGACTATTTAATCTTATTAT
TCGATTAATTAATCCTTTTGATTCCAAAATATAATTGAATTTTTTCCAAA
ACATAGTCGAATATCGGTTATTTTTTCTTACGTAGATCGAAAACAGCGCA
AACAAGCCTTTGTCTACTGTGGATTTGAAAGACAGAAGAAAAAATAATTT
TCAAAAAGCCGTAGTCAAATCAACCAATGACTGCATAATTCTTCTTACCT
TTAAGGATTTTTGATCTACCAAGGGGCATTATAAATTATGAAATGATAGA
ATAATCCTTTTGTGAATCACATTATCGCATCATCTTTAAGTTTCTTAATG
TTTGGATAACAATTCCACGATCTCTCCATGATAAAGTACTTCTATCTTTT
TCTATCTTTTTAATTTCCACACACTTTCCTCTGTTATCAACCTCTCGTTG
TTATTGTTTTTCGATTCGAAAATAGCACTCCATCGTTGTGTTCATGTTCA
AATCAAAAAGGGCAAAACAAAAAAAAGATAAAAGGATAAAAGGGAGAGCG
CTCACAAGATCAAGAATACGTCATTACGTCATATAAAAGCAGGAAGAAAA
CCTTCTTTTGCTCTATTGTTCTGTTCGCAAATGTCAATCATGGCGTTTTG
ATTGGTCAATGCAACATTTTTTTCTTACAAGTTACGTCATGCTCTATCAT
TCTGTTTGCAAAAATGGATTCGAATTTTACACCCAGGTTTTTTTTAATGG
CTAGATAAGAGATCGAATCATCGCGCAGAATTGATGTTGCAGTTTTTGTC
ATCTAAAAAATGAAGTCGCTGCATTGTTTTTCGCGCGAGTTCTATTTTCT
GCAAATCAAATTGCATCACGCATTCGAAAGATTCGAAAATGTTGCAATCA
AAACATTGAATTCATTTGTGAGTTTGGTTTTGAGAAGAAAACATNATGTG
TCGGTGATTTGTAAAATAAAGGGATTCTTTTTCGAAATTGCGCTTCCATT
GAAACGTGAAGTTAAAACTGACGTTACAGCATTTGAGAAAGACATAACTT
CAAGGCAAAAAAATCGGATTACAACCTGTACTTTTTTATATATCATTTTT
TAGCATTTTTCATCCTCTTTCACTTGCGATGGGTGGGAAAATTGTCCAAA
ACAAACAGCCGAATTTAACCGAAAACCATTTTACCGAAATTCGGTATTTT
TGAGAGGATCCCTAAGATATAAGCGAAAAAGGAATAATTAATCGAATACA
AGGATTAAATAATCGAATAAAGGAGATTAAATAATCGAATATAGGAGATT
AAATAGTCTAAACGACGGCAGCTATTCGATTAAATAGTCGAATCATTAAT
CGAACTTAATAATCGAAAATCGATTATATTTTTGAGAAGATCCCTAAAGT
TGTGTTATTATTATACTGCACAGAATGATCCTAGTCTTATCTCCTTCGCT
CCGGTTTTAAAACTCTTCTCTTTCGATGAAGGCCAAAGAGCCTGGCGAAG
TTTTCTATTATGGACTAGAAAGATATCCAAAATATAATCATAACCGTTAA
AGTTAAGAGTCTTAAATGTTGAATGGAACAGAACAGAATATTTTCCAGCA
GGTAGAAGATGTGTNAAAATATAATCATAACCGTTGTTAAGAGTCTTAAA
TGTTGAATGGAACAGAACAGAATATTTTCTAGCAGGTAGAAGATGTGTTT
TTTTTTCAGATATCATAAAAATGATTTTGCTATTTTTTCAGCCGATTTCA
CGCAAAGAAGGTAAAAAGTCATATCATCATATCACGTAACACAGTTAGAT
TTCAGTAAATCATATCACACATGTGGGAACTTGACTGTTCTTTTTACTGT
GAAATCATTTCATAAGATTTTGAATTATTGAAAATTTTATATACGATTCA
TAATTCTAATTCAGCCTAAATGTTACATTTTTTCGAATTGATAGAATGCT
CTATTAAACAAAATCAATGATTCATTTTTCTGTATTTTTGTAGAGTATCG
AAGACAAATTGATCAGGAGTATAAAGATTTATTGAAGAAAAAACAAGATC
AAGAAAAAGTATACAGGTATGATTTTGATGACCAGGTAGTATTCCTGTTG
TCAATGTTTTGACAAGAAATAATTGTTATTATTGGCTTTTTGCTTTGGAT
TTGCTTTACTAGATTGTGGCTTAGAAAAAGATTAAGAAAATGAGAATCTC
ATATTATTATTTTTTACCAGCTGTAAGGCAATAGTTTAACTATGATATTT
TCTTTTCTAGAGTCCAATTTAATGACGACAATGCTGATAAAGGGTATGCT
ACGAATTCATTGCCAACTGAATTTTTAATATCTCCATCTCATTGGTTAAA
AAGTGAAGCTGATTCAACATCAAAAATGCTTTTCAACGATATATAACATA
ACATCTTTTGTTTTGAAAGCTATTCTGGTCTGTAAAATAGACAACTATGA
TTACTTCGTTGTTTTGTTTTTAGTAATGAAGTCATTGTCTTAGACAGCCG
AGATAATGACCTCATAGAATTGGTAAGTTTTATAGATTTTATGGTTGAAA
ATGATGATTCTTCTCCCCTAACTTTTTACAATAATTGTACGCCTCTATAA
TTGCGATTTTTCTCAGATTCATTACAAAAACTTTTCGACTTTTGAATTCG
AGCCTGGAATAGTGCCCACTGGTGCCCAGCATAATTATATAATGAGTTAC
GTTTTTTTTTCAATGGAAGCTGAAATCAAGAAGACGAGGAAAAAGTGCAG
AAACAGAAAGGTATTGTGGTCATTTAATACTTGTTTCCTTTTGTAGGGCC
AAATAGGATTTGTATATGGAAGTATATAAATCAGTGTGAAGATTCGTTTG
TCTAAAGCAAGAGAAAATTGCCACGGTAATTTATACTGAGTATACTGTTA
TGTATTTTCCAAATTTCTTTTAATTTTATTCAGGAGCACTAAATTCAAAG
AGATGCGTGGTGATTCATTGGATTATGGAAGGGCCAATTCTGTTCCTCCA
AGTGTCCCACCCATTCTTGGAGGTGAATATCTCAATTACATTCAATAATA
TTATATATTCAAATATTATATAACTGGTAGAGCAGTTCCGCCATCATGTA
GGAGACGGATGATTATTTTAAGTCATTTTCGGATCAACTTTGAAAGTGAA
AAAATTATACAACCATAATCTAGCTTGTCGTCATCTAGCTGCCCTTGATA
TTTTGTCCAATTAATAACTGTTATTTTTGAAACCCATTAGGATGTTATAG
TTAGCCATCTGAAAAATTCTAAATTGATGAAATTGAAAATATTTTCAATG
AATCGAAATTTGATTTCACTAATTTTTCAACAGGAAACAGCAACACTCAA
TTGAATAAACAAAAACAACAGAAATACAAGTTAGAATTGGAAGAACAAAT
GAAAGAAAATCAATTACTGAAAGCAAAGTGAGTAGTTTTTTATCACTTTA
GTTAGAATTTGAGTTGGACTGTAAAGCACTTTAAGCGAATAAATTTTCGC
GCGGACTTTGAAATTTCGTAAAAATTATAGTCTAAATTTTGAAAATAGAT
CCAAGCAAAATTTGATCCACTTTAAGGTCTTTAGGAGATTTGAACAAATC
AATGTTGACCTTCTTAGTCACCAGGACCCCTTTAGGCTCAAAGTCTTCGG
TCTCAGAACTTTCTTTCGAGATTATTTGTTCGGCGAGAATGATCGATCTA
CGAAAAAATTGTGTGTCAGAGACTCCAACAAGCGACCCTAGATCAAATTG
ATAATTGGTTATCGAGTGTTTTTTATTTGAAATCATTTACTAAAGTTTGA
AGTTTAAAATTTTTTTCTTATTTTTGACTTTAGGGAGAAGTTGAAACGGT
TAGGACGTGTTACGTCAGATGTGGACGTGGCTGAAATTGAGGTAAAATTT
GATCTATTGAAGTAGTCAATTTATTTATCTCGGTGTCGAATAAAACAAGT
TTTTAAACCAAACCAGTTTGAATTGTGGTGAAGAATTTAAATTCACCTAA
ATCATCCAAAATTTTGAATTAATGAAATTAATAAAAACTCAAATTTTAAG
GAACAGTTAATGTATTTCATAACTGTTTATCTTTTATGTTTAACTCAGCT
ACCGAAAAACAATAAGAACAAATGGGCTTTACCTGTCCACAACAAGGCAG
ACACATCTCCTGGCACCGCCACTACCAATAAAAGAAATAATAGTGAACGA
TTAGGTGACAAAGAAGTATCTCCGCACCAACTACCTCATCAACACCAACA
GCCACAGTATCTAGTCAATAACATGCAACAACCGGTTATCAATCCTTTCT
ATCAGCAACCTGTTATTCAGCAACAGTACCCTATGGGTGGGCTACCACAA
CCCGGAATGTATCAAGCTCCTACCATGCAAGCGATGGGCATGAATCCTAT
GGGCATGAACCCTATGATGCAATGGCAAATGGCACCTTCAGCATATCAAC
CCATGATGCAACCTGGATTTAACGGCAGTGGTGGTGCACAACAATTTAAA
GGGAACCCCTATCAACAGGGTGCTGGTGGAGGAGGAGTATATGACACTTT
GGATACTGACAGGAAGAATTCAGCCCGCAACAGAAAACAGTGGGATGTCC
CACCACTCGATTTAAACGGATCTGTCAACAAAAATCAAAGTAAGAAGATA
AAAATTGAATGCTCGAAGGTTTTACATGATAATTATAAGTTAATCTTGAC
ATTTAAAAAACATTTTTATATCAATTTATTTTGTGTAAATCATGGAATAA
TTTTCTCAGTAGTGCCTTGTAGATAGTGAGATGAGAAACTTTGTACAAAT
TATTATTTTCAATTAAGGTAACTTCTCTTCGAGAACACAACACGATTCTT
CCACGACATCTAACAAAATGAACATACCACGTCGGCCGAATNAAGAAAAA
GCTTGCCGTAACAAGCACAAAATCCTATATTTCTAAGGGTCCCCTCTCAT
AAAATCATCGATAAATTTCAAAAAGAATTCTATTACGATTAGGTAACCTT
TTAATTAATCATCCATCAGAATTTGAAAGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015995XLOC_015995Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028244-exon-sc0000671-1575043694:14483..14525TCONS_00028244-exon-sc0000671-1575043694:14483..14525Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1575043694:14075..14140TCONS_00028244-exon-sc0000671-1575043694:14075..14140Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1575043694:12166..12184TCONS_00028244-exon-sc0000671-1575043694:12166..12184Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1575043694:11860..11932TCONS_00028244-exon-sc0000671-1575043694:11860..11932Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1575043694:11633..11665TCONS_00028244-exon-sc0000671-1575043694:11633..11665Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1575043694:11404..11452TCONS_00028244-exon-sc0000671-1575043694:11404..11452Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1575043694:11166..11206TCONS_00028244-exon-sc0000671-1575043694:11166..11206Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1575043694:10904..10992TCONS_00028244-exon-sc0000671-1575043694:10904..10992Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1575043694:10499..10592TCONS_00028244-exon-sc0000671-1575043694:10499..10592Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1575043694:10035..10092TCONS_00028244-exon-sc0000671-1575043694:10035..10092Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1575043694:9287..9827TCONS_00028244-exon-sc0000671-1575043694:9287..9827Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1575043694:8894..9108TCONS_00028244-exon-sc0000671-1575043694:8894..9108Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1510915933:14483..14525TCONS_00028244-exon-sc0000671-1510915933:14483..14525Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1510915933:14075..14140TCONS_00028244-exon-sc0000671-1510915933:14075..14140Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1510915933:12166..12184TCONS_00028244-exon-sc0000671-1510915933:12166..12184Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1510915933:11860..11932TCONS_00028244-exon-sc0000671-1510915933:11860..11932Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1510915933:11633..11665TCONS_00028244-exon-sc0000671-1510915933:11633..11665Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1510915933:11404..11452TCONS_00028244-exon-sc0000671-1510915933:11404..11452Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1510915933:11166..11206TCONS_00028244-exon-sc0000671-1510915933:11166..11206Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1510915933:10904..10992TCONS_00028244-exon-sc0000671-1510915933:10904..10992Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1510915933:10499..10592TCONS_00028244-exon-sc0000671-1510915933:10499..10592Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1510915933:10035..10092TCONS_00028244-exon-sc0000671-1510915933:10035..10092Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1510915933:9287..9827TCONS_00028244-exon-sc0000671-1510915933:9287..9827Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1510915933:8894..9108TCONS_00028244-exon-sc0000671-1510915933:8894..9108Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1491911889:14483..14525TCONS_00028244-exon-sc0000671-1491911889:14483..14525Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1491911889:14075..14140TCONS_00028244-exon-sc0000671-1491911889:14075..14140Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1491911889:12166..12184TCONS_00028244-exon-sc0000671-1491911889:12166..12184Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1491911889:11860..11932TCONS_00028244-exon-sc0000671-1491911889:11860..11932Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1491911889:11633..11665TCONS_00028244-exon-sc0000671-1491911889:11633..11665Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1491911889:11404..11452TCONS_00028244-exon-sc0000671-1491911889:11404..11452Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1491911889:11166..11206TCONS_00028244-exon-sc0000671-1491911889:11166..11206Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1491911889:10904..10992TCONS_00028244-exon-sc0000671-1491911889:10904..10992Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1491911889:10499..10592TCONS_00028244-exon-sc0000671-1491911889:10499..10592Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1491911889:10035..10092TCONS_00028244-exon-sc0000671-1491911889:10035..10092Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1491911889:9287..9827TCONS_00028244-exon-sc0000671-1491911889:9287..9827Clytia hemisphaericaexon
TCONS_00028244-exon-sc0000671-1491911889:8894..9108TCONS_00028244-exon-sc0000671-1491911889:8894..9108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000671supercontigsc0000671:8894..14525 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1138e-05	0	1.9876	0.485256	0	0.799158	0	0	1.45553	2.06948	1.18854	0.38184	1.29339	3.62347	1.10694	1.32239	3.58724e-07	0	2.30392	1.79324	0.869329	1.49895	0	0.804135	1.44771	4.5181e-05	0.275866	0.562853	0.759685	1.5357
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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