TCONS_00028691 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028691
Unique NameTCONS_00028691
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028691 ID=TCONS_00028691|Name=TCONS_00028691|organism=Clytia hemisphaerica|type=transcript|length=451bp
CCACGGAAAACTGCGTTTTTTATATGCTTTAAGTATATTATATAAGGTAA
GGATTGAAAAGGGTTCTCGTTTGAAATATCAGTGACCATATTATGTATTT
TTGTTTGTGAAAAATCAAGTACTTGAACGTTTTTTATGATAAAACGCCCT
CCTCGAATTGTGTTGTTGGTTAATTTGATGATTGATTTAAAAGAAGTCGC
TTTTTTCGTTGATATATTCAACCACGCATTCCTGGTCGGTGATATCAAAA
CACAAGATTGTACAGTGACGTTAAGATTGCTGTTTGTGTTGGTGGTGGAT
ATGAAATCTCCTGTTATCTCTGTTCTAATATTCAAGTTTCGAAAAGATAT
GGCAATGCTTGAGTTTTGATCCATAGAGTTAAGAATTACGAGACTCTGAA
GGTCGACCTGATCAATAGATAGACTGAAAGCACCTTTGGGTTGAATGAAG
G
Run BLAST on NCBI

protein sequence of TCONS_00028691-protein

>TCONS_00028691-protein ID=TCONS_00028691-protein|Name=TCONS_00028691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
FIQPKGAFSLSIDQVDLQSLVILNSMDQNSSIAISFRNLNIRTEITGDFI
STTNTNSNLNVTVQSCVLISPTRNAWLNISTKKATSFKSIIKLTNNTIRG
GRFIIKNVQVLDFSQTKIHNMVTDISNENPFQSLPYIIYLKHIKNAVFR
Run BLAST on NCBI

transcript from alignment at sc0000697:121314..121764

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028691 ID=TCONS_00028691|Name=TCONS_00028691|organism=Clytia hemisphaerica|type=transcript|length=451bp|location=Sequence derived from alignment at sc0000697:121314..121764 (Clytia hemisphaerica)
CCTTCATTCAACCCAAAGGTGCTTTCAGTCTATCTATTGATCAGGTCGAC
CTTCAGAGTCTCGTAATTCTTAACTCTATGGATCAAAACTCAAGCATTGC
CATATCTTTTCGAAACTTGAATATTAGAACAGAGATAACAGGAGATTTCA
TATCCACCACCAACACAAACAGCAATCTTAACGTCACTGTACAATCTTGT
GTTTTGATATCACCGACCAGGAATGCGTGGTTGAATATATCAACGAAAAA
AGCGACTTCTTTTAAATCAATCATCAAATTAACCAACAACACAATTCGAG
GAGGGCGTTTTATCATAAAAAACGTTCAAGTACTTGATTTTTCACAAACA
AAAATACATAATATGGTCACTGATATTTCAAACGAGAACCCTTTTCAATC
CTTACCTTATATAATATACTTAAAGCATATAAAAAACGCAGTTTTCCGTG
G

Coding sequence (CDS) from alignment at sc0000697:121314..121764

>TCONS_00028691 ID=TCONS_00028691|Name=TCONS_00028691|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at sc0000697:121314..121764 (Clytia hemisphaerica)
TTCATTCAACCCAAAGGTGCTTTCAGTCTATCTATTGATCAGGTCGACCT
TCAGAGTCTCGTAATTCTTAACTCTATGGATCAAAACTCAAGCATTGCCA
TATCTTTTCGAAACTTGAATATTAGAACAGAGATAACAGGAGATTTCATA
TCCACCACCAACACAAACAGCAATCTTAACGTCACTGTACAATCTTGTGT
TTTGATATCACCGACCAGGAATGCGTGGTTGAATATATCAACGAAAAAAG
CGACTTCTTTTAAATCAATCATCAAATTAACCAACAACACAATTCGAGGA
GGGCGTTTTATCATAAAAAACGTTCAAGTACTTGATTTTTCACAAACAAA
AATACATAATATGGTCACTGATATTTCAAACGAGAACCCTTTTCAATCCT
TACCTTATATAATATACTTAAAGCATATAAAAAACGCAGTTTTCCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016274XLOC_016274Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028691-proteinTCONS_00028691-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028691-exon-sc0000697-1491911889:121314..121764TCONS_00028691-exon-sc0000697-1491911889:121314..121764Clytia hemisphaericaexon
TCONS_00028691-exon-sc0000697-1510915933:121314..121764TCONS_00028691-exon-sc0000697-1510915933:121314..121764Clytia hemisphaericaexon
TCONS_00028691-exon-sc0000697-1575043694:121314..121764TCONS_00028691-exon-sc0000697-1575043694:121314..121764Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000697supercontigsc0000697:121314..121764 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.350859	0.794302	0.49136	0.944239	0.702469	2.34981	0	0.141997	0	0.112802	1.40988	0.96371	0	0.207412	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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