|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028996 ID=TCONS_00028996|Name=TCONS_00028996|organism=Clytia hemisphaerica|type=transcript|length=1926bp
CGCATGGTTACGCATTGATTTTCTACATAATTTCCTGTTTTGCCTTGGTT
ACGCATGTGGTTACGCATTGGCATAGGGTCCTCCAGGCTTCAGGTACCCC
CAATAAAATTAGGTACCCCCAAcgatttaggtacccccaaagtTGTTTGG
ATTCTTAGGTAGCCCCCAGGATTTGGTACCCCCattaaattatgtttttt
agGTACCCCTTTTATTACGTAGCCGATtagaagaatttcttttttttgca
ttctattCTCTGTAATGATAATTTTGTGTcatttgttgaaagtattcaaa
GAACACACAAGAGTAAGACATGTCTTTTCCCACAAATCCATGTGAAGAAA
CAAATATCCAAAATAGGTGAAAATTATTAATATGAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNATGATACATATTAAACTAGGCTATGTACA
TTTTATATAGTTGaccttagtattttgttctcaGACCTTTCTTTTGAATC
ACCAATCTCAATCTTTTGGGCATAGAGTTGATCAGATTGTTTACGGTTTG
CACAGGGAACTccataaaagttttttcaatccTGGTGGTAAACTCATCAT
AACTTGCCTTagttatgttttgatttttggcgtCTTCGGCAAGTTTTTTG
CGAATAAGGTGGAACAAGTTCTCAATTATATTCAGATCAGGTGATCTAAC
GGGAATCTTCACAAGCCCATAATCTTTACTTTACCAAGTGTCCCTACACA
AGGCGGCGTTTTGTTTTGGACATCCATCCATTAAGAAGGTACGTTGTCCA
TCCTTGGCCCCACAGTTGTCAAAAGNTATTCAAATTGAACCACTCCACGT
CCGTGGGCAAACTACaaatttctatttataaaaaaaaaacaaaaaaaaat
cgttGAATTTTAATCTCCTTCACTGGGGTTACTGTAAAATGTAAAGGaca
caagaaagaaaaagtagTAAAAACGAAGGGTTTGGTTGAAAATTNACAAG
GCGGCGTTTTGTTTTGGACATCCATCCATTAAGAAGGTACGTTGTCCATC
CTTGGCCCCACAGTTGTCAAAAGCTTTGGGAAATTCCTGtctaattaaat
ttgaaaagtttttaccATTGATGGTCCACGTGTGGGGGTGACACATTACA
ACACCTTTTCCATAGGAGACAGCAACAAAGAACTTTGCAACTTTTCCTCC
ACTCCCCTCTTTCCTTCCTTCTGTTGTTATTTTGAGCCCCTCGTCTGGTC
TTCGCCATGTCATAGATGTTACAGCCCGAGCTTCCCCGGCAGGGTTTGAT
TTGTGTGAGAAGCCCACACCGTCCAAGTAAAACCATACTTCATTCTGCCA
ATAAGACAACGGTAGACGGATTTTCTCTTTCGCCCATGTAACGCGCAGCT
TCTTATTCTTAACACTTAGAAGGCCCTTCTTGCGGGACTGCAAATATCTA
TAATTGTTCCTGCGTAAGCACCGAGCAATATCCCTTCCATGTATTCCTGC
CTGCTGCAATCCAGTCTCTTCCAAAATCTTTCCTGCCGTGAAAGCAGCAC
CATCAACACGGAGCTTCAAGAGCGCTCTGAGGATTATTCGTTCCTTTCGG
GCATCTAATTTCTTTGGCCGGCCTGGATTGTTATGTCGGGCATCCATGGA
AGCAGTTGGCTGATCCAATGGTTTTTTTGCATGCCGGCATATTGTTCTCG
GTGAAACTTTCAATTTATGGAAACGTTGTATCAGTTCGGGGCAACTTACA
CCATGCTCTTGATGGAGGACGGCCTGCTTAATTGAATCTCTTGCCGATAT
CTTCTGATAcgtctttttataatttttcacgTTCATTACGTTATTtttgt
atatgattgttttcaactttttattatctaaagataaacaaatgagaGTT
ATAACAGTGAAATGAAAATGTCTATA Run BLAST on NCBI transcript from alignment at sc0000719:137801..139785- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028996 ID=TCONS_00028996|Name=TCONS_00028996|organism=Clytia hemisphaerica|type=transcript|length=1985bp|location=Sequence derived from alignment at sc0000719:137801..139785- (Clytia hemisphaerica)
CGCATGGTTACGCATTGATTTTCTACATAATTTCCTGTTTTGCCTTGGTT
ACGCATGTGGTTACGCATTGGCATAGGGTCCTCCAGGCTTCAGGTACCCC
CAATAAAATTAGGTACCCCCAACGATTTAGGTACCCCCAAAGTTGTTTGG
ATTCTTAGGTAGCCCCCAGGATTTGGTACCCCCATTAAATTATGTTTTTT
AGGTACCCCTTTTATTACGTAGCCGATTAGAAGAATTTCTTTTTTTTGCA
TTCTATTCTCTGTAATGATAATTTTGTGTCATTTGTTGAAAGTATTCAAA
GAACACACAAGAGTAAGACATGTCTTTTCCCACAAATCCATGTGAAGAAA
CAAATATCCAAAATAGGTGAAAATTATTAATATGAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNATGATACATATTAAACTAGGCTATGTACA
TTTTATATAGTTGACCTTAGTATTTTGTTCTCAGACCTTTCTTTTGAATC
ACCAATCTCAATCTTTTGGGCATAGAGTTGATCAGATTGTTTACGGTTTG
CACAGGGAACTCCATAAAAGTTTTTTCAATCCTGGTGGTAAACTCATCAT
AACTTGCCTTAGTTATGTTTTGATTTTTGGCGTCTTCGGCAAGTTTTTTG
CGAATAAGGTGGAACAAGTTCTCAATTATATTCAGATCAGGTGATCTAAC
GGGAATCTTCACAAGCCCATAATCTTTACTTTACCAAGTGTCCCTACACA
AGGCGGCGTTTTGTTTTGGACATCCATCCATTAAGAAGGTACGTTGTCCA
TCCTTGGCCCCACAGTTGTCAAAAGNTATTCAAATTGAACCACTCCACGT
CCGTGGGCAAACTACAAATTTCTATTTATAAAAAAAAAACAAAAAAAAAT
CGTTGAATTTTAATCTCCTTCACTGGGGTTACTGTAAAATGTAAAGGACA
CAAGAAAGAAAAAGTAGTAAAAACGAAGGGTTTGGTTGAAAATTNACAAG
GCGGCGTTTTGTTTTGGACATCCATCCATTAAGAAGGTACGTTGTCCATC
CTTGGCCCCACAGTTGTCAAAAGCTTTGGGAAATTCCTGTCTAATTAAAT
TTGAAAAGTTTTTACCATTGATGGTCCACGTGTGGGGGTGACACATTACA
ACACCTTTTCCATAGGAGACAGCAACAAAGAACTTTGCAACTTTTCCTCC
ACTCCCCTCTTTCCTTCCTTCTGTTGTTATTTTGAGCCCCTCGTCTGGTC
TTCGCCATGTCATAGATGTTACAGCCCGAGCTTCCCCGGCAGGGTTTGAT
TTGTGTGAGAAGCCCACACCGTCCAAGTAAAACCATACTTCATTCTGCCA
ATAAGACAACGGTAGACGGATTTTCTCTTTCGCCCATGTAACGCGCAGCT
TCTTATTCTTAACACTTAGAAGGCCCTTCTTGCGGGACTGCAAATATCTA
TAATTGTTCCTGCGTAAGCACCGAGCAATATCCCTTCCATGTATTCCTGC
CTGCTGCAATCCAGTCTCTTCCAAAATCTTTCCTGCCGTGAAAGCAGCAC
CATCAACACGGAGCTTCAAGAGCGCTCTGAGGNAATCTTTCCTGTCGTGA
AAGCAGCACCATCAGCACGGAGCTTCAAGAGTGCTCTGAGGATTATTCGT
TCCTTTCGGGCATCTAATTTCTTTGGCCGGCCTGGATTGTTATGTCGGGC
ATCCATGGAAGCAGTTGGCTGATCCAATGGTTTTTTTGCATGCCGGCATA
TTGTTCTCGGTGAAACTTTCAATTTATGGAAACGTTGTATCAGTTCGGGG
CAACTTACACCATGCTCTTGATGGAGGACGGCCTGCTTAATTGAATCTCT
TGCCGATATCTTCTGATACGTCTTTTTATAATTTTTCACGTTCATTACGT
TATTTTTGTATATGATTGTTTTCAACTTTTTATTATCTAAAGATAAACAA
ATGAGAGTTATAACAGTGAAATGAAAATGTCTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028996-exon-sc0000719-1575043694:138205..139785 | TCONS_00028996-exon-sc0000719-1575043694:138205..139785 | Clytia hemisphaerica | exon |
| TCONS_00028996-exon-sc0000719-1575043694:137801..138145 | TCONS_00028996-exon-sc0000719-1575043694:137801..138145 | Clytia hemisphaerica | exon |
| TCONS_00028996-exon-sc0000719-1510915933:138205..139785 | TCONS_00028996-exon-sc0000719-1510915933:138205..139785 | Clytia hemisphaerica | exon |
| TCONS_00028996-exon-sc0000719-1510915933:137801..138145 | TCONS_00028996-exon-sc0000719-1510915933:137801..138145 | Clytia hemisphaerica | exon |
| TCONS_00028996-exon-sc0000719-1491911889:138205..139785 | TCONS_00028996-exon-sc0000719-1491911889:138205..139785 | Clytia hemisphaerica | exon |
| TCONS_00028996-exon-sc0000719-1491911889:137801..138145 | TCONS_00028996-exon-sc0000719-1491911889:137801..138145 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000719 | supercontig | sc0000719:137801..139785 - |
Blast
The following BLAST results are available for this feature:
|
