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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029197 ID=TCONS_00029197|Name=TCONS_00029197|organism=Clytia hemisphaerica|type=transcript|length=3223bp TAAAGAGGTTGCATGATATTCACTACGTATTTTCATATGTGTATTAAAGT AGATGGTCGAGAAAACAAGAATTTTCATCATATTCCAGTTTCAAGGATCT TCACTGCAAGAAATCTATGTCTCACAGAACAAAGCAAGTCGAGATGTTAA TACATGCGGCATACCAACACAACCGTGTCGAACTATTCCGTACGCAATCA CAAAATCCAATCCTTCAGATACCATCTTTCTTGACGCTGATTGCACATTC GTTCAAAACAAAGCCCTTTTTATTGATACACAATTGACTTTAGGCTCGTA TGGAGGGCGGGATCTCCATCGCAAGAATGCTGTCATCATGTTCTCCCAAT CATTCCATAGTAATACCTTTCTCTTTCACTTTAATGGAAACGTGACAATG AACAATTTAACCGTTGTTTATAATTCTACCTGGCAGCACTTGGCTGTTAT CTTTGACTTGGGAGACGGAGTTGTCCTTAAAGTAAATGATTGTATTTTAA ACCTTTTAACTGATCCGAAATTGACGAATTTGGTGTACGATGTGAATCAG TTTTCAtctattttattttacaaaacgACTTTTGATGGCTTTGGAAGCCA AAAGCACCTCGCCAAAACTTACAGTGGACACCACCAAATATCTCGTACGA ATTCAAAAAAGTATTCTGAaaccattttcgatttttgttCCTTCAAAAGT TCTATCATCTCCCTAAATCCAAGGATTTTTTCCGTCTAAAAGAAACCAAA GGAGCATTCAAAAAAGACATCCCTGACAGTTCCAGGCCAAAGTTTATCGA TCACAAATTCCATATTTGAAATGACAGAGGTCACCGTTTATGATTTTGTT ACTATCACACTCGATAACAATCGCTTTAAACGTTCACCTGTTACAATCGT TAAAGCTTTGAATTACAAATCTCACCTAGTCAAAGTTACAAAttgtcatt ttcaaaaatcatattacaagaatttcaacaaaatataCCCTTACCTTTTA AAAATTTGGAATCAAGGAAGTATTCTTGTCGATAATTGCACATTTGAAGG GGCTACATACGGTGCGTTAGGTATACAAGATTTGAATGACTTAACTTCTA CCTTGAAGGAAATAACATACCTACTGACCGTGCCGCAGGATTAACAATGC TGAGTGGTGGATTTATGAACTTTGTTATTTCAAATTGCTCCTTCATGAAC AATTCAGCTGTCTCTGGTCAAATTGGTTCAATCAAAGTTAAAGCAAGCAC GTTGCATTTCGATGCGTCATTAAAAGTTTTGAACACTACCATCAATTTGG GTGCCCACCATTCATCATTGATTGGCACAAGTGTCTTATTTGAGACATAT GATTATCAAAGTAACGTACCGTGTTTTTTTATGGATGAAGCTTCAAAGAT ATCATGCCCAATTGACAAGACGATTCGGCACCATTATACTCCAAAGCAAT ATCTGCGACTAGATTGTATCAGTTGCAACAGCTCATCATACAACGTGATT GACAGAGCTTTCATACGCGTTAATAGCTCTGAAAAGCAGTCGTTAGAAGA ACATGATATTACATGTCATAGTTGCCCTTATCAAGCCTCTTGCAAAGATG GTGCTATTCGTAGTAAAGGCAATTACTGGGGATTATCTGACAATTTTGGT GAAGTAACATTTTACCCTTGTCCTCCCTTATATTGTTGCTCGTCCTTAGA AACGTGTGAATCGTACAACACTTGCACTGAGAATCGTGTTGGAAGACTCT GTGGCGAATGCCAAAAAGGACATGTTCTATCATTTTTCAGTCATAACCAA TGTCTTGATAAATCGTGTTGTGAGTATTCATGGACTGTTTGGTTTGGTTA TGTTTTGCTGGCTGCTCtcatttgttcattttttttgttcaacAAAGACG TTTGGAACCGCATAAAGAATGGAAGGGGGAGCATCAATAGTGAGTCGTTT GAAACAGAAGAATTTCTTTCGGATGCTGATACCACTAACGAACTTTTGAT TTCACATTCTCCGTTTCACAAGAAATCACCACAGTCCTACCAATTACCGG GCGTTATAAAAATCAGTTTCTTTTTCTACCAAACGGCTTCAATCATTCGA GTTGTCGCGTCAGCAAAAACTTACTATCACATGCCAACCATTGTCAGTTT TTTCTTTACGATCTTCAACATCAAATTGGACTTCAATACAAGTTTCATCA AAGTTTGTCCTTTGTGTACAAATAGTATGGTTGTTATGGATGCATTGAAA TCTAGTTTATCGTTAGCATGCTTGCTAATGCTTACGCTGGCAATGATTGT TTGTGGTCTGCTCAAATGCTCATTGAAGAGGAAGTGCGAGTCATTCTTAC GTCGATTAAAAGGAGCGTATGTTAATGTTTTGCTTCTCAGTTACTCAAAC ATTTCTGTGTTTTGTTTACGAAATATCCATTGTGTAGAGATTGCTGGTGA ATCATATTTACACGTTCAAGCTTCCATCAAATGTTATACTGATTGGCAAT ATCTTATCATGGCCGTGATTGCTTTATGGGTGGTTCCTTTCCCTTTAGTG TTATACACTGGTTGTCGGGCCCTTCGGTCTTATCGCATCTCACCGAACGA GTTTCTTATGATTCTTACTATACCGcccttatcattgtttttcttgaTCA TCCGCCCTTTGGCGTTCACCCAATACCATTTCGTTTTCGACCAAGCCACC CTTGAAGAAAAGGATCAAATATTAGGTGTGTTGAACGGACCTTTcaagtt gaatttcaaaaatcaagaatcaCATCTCATCTGGGAACCTGTTTTGATTT TACGCCGTTTGTTACTGATCGTCATGACAACCTTTATTTCGTCACCAATC GTCAAACTTTATCCCGTGGGTTTGCTTTTCTTCAGTTTTGCCGTGCATGA TTTTGTACAAAATCCATTTGAcaatcaaaaactaaatttcattcaaaatg taTCAATGGCCTTATTGTGtcttttgaccctttttaataCTTTCTGGGCG GTTACTAACAGTGTGGATTTGCTTCAAGACAGAATTGATAACATCCTTGG TGAAATATTGTTGGCTTGTGAAGCGTTTATTCTATGCTTCCCTATTGTTT GTATGGTAATTTATTTGATTTAtaagtttattttaattttttgctgtAGA AACAAGAAATAATTGAATTTCACCCCCAGTTTACTCCCTTTAGATCTTTT TGAATGAAGTCTCATGTCAAAGA Run BLAST on NCBI protein sequence of TCONS_00029197-protein >TCONS_00029197-protein ID=TCONS_00029197-protein|Name=TCONS_00029197-protein|organism=Clytia hemisphaerica|type=polypeptide|length=671bp
MLSGGFMNFVISNCSFMNNSAVSGQIGSIKVKASTLHFDASLKVLNTTIN LGAHHSSLIGTSVLFETYDYQSNVPCFFMDEASKISCPIDKTIRHHYTPK QYLRLDCISCNSSSYNVIDRAFIRVNSSEKQSLEEHDITCHSCPYQASCK DGAIRSKGNYWGLSDNFGEVTFYPCPPLYCCSSLETCESYNTCTENRVGR LCGECQKGHVLSFFSHNQCLDKSCCEYSWTVWFGYVLLAALICSFFLFNK DVWNRIKNGRGSINSESFETEEFLSDADTTNELLISHSPFHKKSPQSYQL PGVIKISFFFYQTASIIRVVASAKTYYHMPTIVSFFFTIFNIKLDFNTSF IKVCPLCTNSMVVMDALKSSLSLACLLMLTLAMIVCGLLKCSLKRKCESF LRRLKGAYVNVLLLSYSNISVFCLRNIHCVEIAGESYLHVQASIKCYTDW QYLIMAVIALWVVPFPLVLYTGCRALRSYRISPNEFLMILTIPPLSLFFL IIRPLAFTQYHFVFDQATLEEKDQILGVLNGPFKLNFKNQESHLIWEPVL ILRRLLLIVMTTFISSPIVKLYPVGLLFFSFAVHDFVQNPFDNQKLNFIQ NVSMALLCLLTLFNTFWAVTNSVDLLQDRIDNILGEILLACEAFILCFPI VCMVIYLIYKFILIFCCRNKK Run BLAST on NCBI transcript from alignment at sc0000728:132211..135969- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029197 ID=TCONS_00029197|Name=TCONS_00029197|organism=Clytia hemisphaerica|type=transcript|length=3759bp|location=Sequence derived from alignment at sc0000728:132211..135969- (Clytia hemisphaerica) TAAAGAGGTTGCATGATATTCACTACGTATTTTCATATGTGTATTAAAGT
AGATGGTCGAGAAAACAAGAATTTTCATCATATTCCAGTTTCAAGGTAAT
GCTACTATTCTTGTTTCTGATTTTTCATCCTTCAATTCCTTCAAAAAAGT
TGTTCAGAATGGGCTTTTCCAGTTAAAATCCGTACCCCCACGTTGAGGAT
ATCCATTTTCAAAATTGTTAAACCCTGGGATGTCGAAGCCCTATTTTTCT
CCAACCCCTTGGATTTCCAGGTTAAATTTTTCCCCATCCTCTACGACGTC
TTTTGTGAAAAGAAATAACNGATATCCTCAACATGGGGGATACAGAGTTC
ATATGGAAAAGCCCATTATGGCGGCTAAATACAAAAAAATTCTCAATAGC
CTGTACCAAACTCTTCTACGCGATTATATCACCAGTTTGTCCAAGAAATA
TTCGGGTGTACCTTGGCCTTTTAGTGCCCTCCAAAAAAATGCTGCTGGGG
AACAAAGTTCAATATCACGACTTTAAGAGAATTTTATTCCTCTTTGGCTG
AAAAGATCAATACTATGGTGGCATGGGGTTCGAAATTGAATAAAGCTATA
ACAAGTTTCAAAACCTTTCTTCAATCTACAGGATCTTCACTGCAAGAAAT
CTATGTCTCACAGAACAAAGCAAGTCGAGATGTTAATACATGCGGCATAC
CAACACAACCGTGTCGAACTATTCCGTACGCAATCACAAAATCCAATCCT
TCAGATACCATCTTTCTTGACGCTGATTGCACATTCGTTCAAAACAAAGC
CCTTTTTATTGATACACAATTGACTTTAGGCTCGTATGGAGGGCGGGATC
TCCATCGCAAGAATGCTGTCATCATGTTCTCCCAATCATTCCATAGTAAT
ACCTTTCTCTTTCACTTTAATGGAAACGTGACAATGAACAATTTAACCGT
TGTTTATAATTCTACCTGGCAGCACTTGGCTGTTATCTTTGACTTGGGAG
ACGGAGTTGTCCTTAAAGTAAATGATTGTATTTTAAACCTTTTAACTGAT
CCGAAATTGACGAATTTGGTGTACGATGTGAATCAGTTTTCATCTATTTT
ATTTTACAAAACGACTTTTGATGGCTTTGGAAGCCAAAAGCACCTCGCCA
AAACTTACAGTGGACACCACCAAATATCTCGTACGAATTCAAAAAAGTAT
TCTGAAACCATTTTCGATTTTTGTTCCTTCAAAAGTTCTATCATCTCCCT
AAATCCAAGGATTTTTTCCGTCTAAAAGAAACCAAAGGAGCATTCAAAAA
AGACATCCCTGACAGTTCCAGGCCAAAGTTTATCGATCACAAATTCCATA
TTTGAAATGACAGAGGTCACCGTTTATGATTTTGTTACTATCACACTCGA
TAACAATCGCTTTAAACGTTCACCTGTTACAATCGTTAAAGCTTTGAATT
ACAAATCTCACCTAGTCAAAGTTACAAATTGTCATTTTCAAAAATCATAT
TACAAGAATTTCAACAAAATATACCCTTACCTTTTAAAAATTTGGAATCA
AGGAAGTATTCTTGTCGATAATTGCACATTTGAAGGGGCTACATACGGTG
CGTTAGGTATACAAGATTTGAATGACTTAACTTCTACCTTGAAGGAAATA
ACATACCTACTGACCGTGCCGCAGGATTAACAATGCTGAGTGGTGGATTT
ATGAACTTTGTTATTTCAAATTGCTCCTTCATGAACAATTCAGCTGTCTC
TGGTCAAATTGGTTCAATCAAAGTTAAAGCAAGCACGTTGCATTTCGATG
CGTCATTAAAAGTTTTGAACACTACCATCAATTTGGGTGCCCACCATTCA
TCATTGATTGGCACAAGTGTCTTATTTGAGACATATGATTATCAAAGTAA
CGTACCGTGTTTTTTTATGGATGAAGCTTCAAAGATATCATGCCCAATTG
ACAAGACGATTCGGCACCATTATACTCCAAAGCAATATCTGCGACTAGAT
TGTATCAGTTGCAACAGCTCATCATACAACGTGATTGACAGAGCTTTCAT
ACGCGTTAATAGCTCTGAAAAGCAGTCGTTAGAAGAACATGATATTACAT
GTCATAGTTGCCCTTATCAAGCCTCTTGCAAAGATGGTGCTATTCGTAGT
AAAGGCAATTACTGGGGATTATCTGACAATTTTGGTGAAGTAACATTTTA
CCCTTGTCCTCCCTTATATTGTTGCTCGTCCTTAGAAACGTGTGAATCGT
ACAACACTTGCACTGAGAATCGTGTTGGAAGACTCTGTGGCGAATGCCAA
AAAGGACATGTTCTATCATTTTTCAGTCATAACCAATGTCTTGATAAATC
GTGTTGTGAGTATTCATGGACTGTTTGGTTTGGTTATGTTTTGCTGGCTG
CTCTCATTTGTTCATTTTTTTTGTTCAACAAAGACGTTTGGAACCGCATA
AAGAATGGAAGGGGGAGCATCAATAGTGAGTCGTTTGAAACAGAAGAATT
TCTTTCGGATGCTGATACCACTAACGAACTTTTGATTTCACATTCTCCGT
TTCACAAGAAATCACCACAGTCCTACCAATTACCGGGCGTTATAAAAATC
AGTTTCTTTTTCTACCAAACGGCTTCAATCATTCGAGTTGTCGCGTCAGC
AAAAACTTACTATCACATGCCAACCATTGTCAGTTTTTTCTTTACGATCT
TCAACATCAAATTGGACTTCAATACAAGTTTCATCAAAGTTTGTCCTTTG
TGTACAAATAGTATGGTTGTTATGGATGCATTGAAATCTAGTTTATCGTT
AGCATGCTTGCTAATGCTTACGCTGGCAATGATTGTTTGTGGTCTGCTCA
AATGCTCATTGAAGAGGAAGTGCGAGTCATTCTTACGTCGATTAAAAGGA
GCGTATGTTAATGTTTTGCTTCTCAGTTACTCAAACATTTCTGTGTTTTG
TTTACGAAATATCCATTGTGTAGAGATTGCTGGTGAATCATATTTACACG
TTCAAGCTTCCATCAAATGTTATACTGATTGGCAATATCTTATCATGGCC
GTGATTGCTTTATGGGTGGTTCCTTTCCCTTTAGTGTTATACACTGGTTG
TCGGGCCCTTCGGTCTTATCGCATCTCACCGAACGAGTTTCTTATGATTC
TTACTATACCGCCCTTATCATTGTTTTTCTTGATCATCCGCCCTTTGGCG
TTCACCCAATACCATTTCGTTTTCGACCAAGCCACCCTTGAAGAAAAGGA
TCAAATATTAGGTGTGTTGAACGGACCTTTCAAGTTGAATTTCAAAAATC
AAGAATCACATCTCATCTGGGAACCTGTTTTGATTTTACGCCGTTTGTTA
CTGATCGTCATGACAACCTTTATTTCGTCACCAATCGTCAAACTTTATCC
CGTGGGTTTGCTTTTCTTCAGTTTTGCCGTGCATGATTTTGTACAAAATC
CATTTGACAATCAAAAACTAAATTTCATTCAAAATGTATCAATGGCCTTA
TTGTGTCTTTTGACCCTTTTTAATACTTTCTGGGCGGTTACTAACAGTGT
GGATTTGCTTCAAGACAGAATTGATAACATCCTTGGTGAAATATTGTTGG
CTTGTGAAGCGTTTATTCTATGCTTCCCTATTGTTTGTATGGTAATTTAT
TTGATTTATAAGTTTATTTTAATTTTTTGCTGTAGAAACAAGAAATAATT
GAATTTCACCCCCAGTTTACTCCCTTTAGATCTTTTTGAATGAAGTCTCA
TGTCAAAGA Coding sequence (CDS) from alignment at sc0000728:132211..135969- >TCONS_00029197 ID=TCONS_00029197|Name=TCONS_00029197|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at sc0000728:132211..135969- (Clytia hemisphaerica) ATGCTGAGTGGTGGATTTATGAACTTTGTTATTTCAAATTGCTCCTTCAT GAACAATTCAGCTGTCTCTGGTCAAATTGGTTCAATCAAAGTTAAAGCAA GCACGTTGCATTTCGATGCGTCATTAAAAGTTTTGAACACTACCATCAAT TTGGGTGCCCACCATTCATCATTGATTGGCACAAGTGTCTTATTTGAGAC ATATGATTATCAAAGTAACGTACCGTGTTTTTTTATGGATGAAGCTTCAA AGATATCATGCCCAATTGACAAGACGATTCGGCACCATTATACTCCAAAG CAATATCTGCGACTAGATTGTATCAGTTGCAACAGCTCATCATACAACGT GATTGACAGAGCTTTCATACGCGTTAATAGCTCTGAAAAGCAGTCGTTAG AAGAACATGATATTACATGTCATAGTTGCCCTTATCAAGCCTCTTGCAAA GATGGTGCTATTCGTAGTAAAGGCAATTACTGGGGATTATCTGACAATTT TGGTGAAGTAACATTTTACCCTTGTCCTCCCTTATATTGTTGCTCGTCCT TAGAAACGTGTGAATCGTACAACACTTGCACTGAGAATCGTGTTGGAAGA CTCTGTGGCGAATGCCAAAAAGGACATGTTCTATCATTTTTCAGTCATAA CCAATGTCTTGATAAATCGTGTTGTGAGTATTCATGGACTGTTTGGTTTG GTTATGTTTTGCTGGCTGCTCTCATTTGTTCATTTTTTTTGTTCAACAAA GACGTTTGGAACCGCATAAAGAATGGAAGGGGGAGCATCAATAGTGAGTC GTTTGAAACAGAAGAATTTCTTTCGGATGCTGATACCACTAACGAACTTT TGATTTCACATTCTCCGTTTCACAAGAAATCACCACAGTCCTACCAATTA CCGGGCGTTATAAAAATCAGTTTCTTTTTCTACCAAACGGCTTCAATCAT TCGAGTTGTCGCGTCAGCAAAAACTTACTATCACATGCCAACCATTGTCA GTTTTTTCTTTACGATCTTCAACATCAAATTGGACTTCAATACAAGTTTC ATCAAAGTTTGTCCTTTGTGTACAAATAGTATGGTTGTTATGGATGCATT GAAATCTAGTTTATCGTTAGCATGCTTGCTAATGCTTACGCTGGCAATGA TTGTTTGTGGTCTGCTCAAATGCTCATTGAAGAGGAAGTGCGAGTCATTC TTACGTCGATTAAAAGGAGCGTATGTTAATGTTTTGCTTCTCAGTTACTC AAACATTTCTGTGTTTTGTTTACGAAATATCCATTGTGTAGAGATTGCTG GTGAATCATATTTACACGTTCAAGCTTCCATCAAATGTTATACTGATTGG CAATATCTTATCATGGCCGTGATTGCTTTATGGGTGGTTCCTTTCCCTTT AGTGTTATACACTGGTTGTCGGGCCCTTCGGTCTTATCGCATCTCACCGA ACGAGTTTCTTATGATTCTTACTATACCGCCCTTATCATTGTTTTTCTTG ATCATCCGCCCTTTGGCGTTCACCCAATACCATTTCGTTTTCGACCAAGC CACCCTTGAAGAAAAGGATCAAATATTAGGTGTGTTGAACGGACCTTTCA AGTTGAATTTCAAAAATCAAGAATCACATCTCATCTGGGAACCTGTTTTG ATTTTACGCCGTTTGTTACTGATCGTCATGACAACCTTTATTTCGTCACC AATCGTCAAACTTTATCCCGTGGGTTTGCTTTTCTTCAGTTTTGCCGTGC ATGATTTTGTACAAAATCCATTTGACAATCAAAAACTAAATTTCATTCAA AATGTATCAATGGCCTTATTGTGTCTTTTGACCCTTTTTAATACTTTCTG GGCGGTTACTAACAGTGTGGATTTGCTTCAAGACAGAATTGATAACATCC TTGGTGAAATATTGTTGGCTTGTGAAGCGTTTATTCTATGCTTCCCTATT GTTTGTATGGTAATTTATTTGATTTATAAGTTTATTTTAATTTTTTGCTG TAGAAACAAGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00029197-exon-sc0000728-1575043694:135875..135969 | TCONS_00029197-exon-sc0000728-1575043694:135875..135969 | Clytia hemisphaerica | exon |
TCONS_00029197-exon-sc0000728-1575043694:132211..135338 | TCONS_00029197-exon-sc0000728-1575043694:132211..135338 | Clytia hemisphaerica | exon |
TCONS_00029197-exon-sc0000728-1510915933:135875..135969 | TCONS_00029197-exon-sc0000728-1510915933:135875..135969 | Clytia hemisphaerica | exon |
TCONS_00029197-exon-sc0000728-1510915933:132211..135338 | TCONS_00029197-exon-sc0000728-1510915933:132211..135338 | Clytia hemisphaerica | exon |
TCONS_00029197-exon-sc0000728-1491911889:135875..135969 | TCONS_00029197-exon-sc0000728-1491911889:135875..135969 | Clytia hemisphaerica | exon |
TCONS_00029197-exon-sc0000728-1491911889:132211..135338 | TCONS_00029197-exon-sc0000728-1491911889:132211..135338 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000728 | supercontig | sc0000728:132211..135969 - |
Blast
The following BLAST results are available for this feature:
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