TCONS_00029271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029271
Unique NameTCONS_00029271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1234

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029271 ID=TCONS_00029271|Name=TCONS_00029271|organism=Clytia hemisphaerica|type=transcript|length=1234bp
ttttggtgAACCTTTAAGTTATTCTACAGACAAAAGTAAGCCAACAAGTT
ACGAAAGCTCACAGCATATTATTTGAGGAGGGAGAAAGGAAACGCATGCT
AAGAATCTATCAAGATCTTTTCAAGGTTTAGCAAAAGCAAAGACTTGCAG
TCAAAACGTCTAAAATACGAGATAATCATCTTTACATACTGGCGTTTCTT
GCATGGGCTGGatGATAAAGTCTCACACAATAATATTTACAATCTGTATT
TTGGCAACTTGTTTAATTTGCCGAACAGATGGGAAAGGAAAGCAAGGTAT
TCGAATGCATTTATGTGGAGCTGAATTTGTGAAATGGTGGACAATTACAT
GCAGAATAAAGCAAAAACATAATTACATAACCAAGAAAGAAGAGATAACA
CTGGGATCGAATAAAGCCAGGCAATTTTTGATGTTACCAACCCGAAAGTT
TAAAGTGGCTCGAACTCAGAATGCTCAAGAAGAATGTTGCAATGAAGGCT
GTACCGTACGAGAAATCATTGGATATAACTGCTAATGGATGGACAAAAAG
ACTAATAGTAATAGCGGAtaataaaaattaacaaatttcCCTGTTCGAgc
atatcaaaattcaaaataactttTAGAAAGACAAAGTTTTGAATGAGACT
TTGAGCCTCGATAAGTTCGTTTCCAACATCAACTGTTTTTGGTAAGTTTC
CACTACCTACCACTTTTTAGCGGAAAAACAGCACTCTTCCGAAAAGTCAA
CTGGTTTCTTTAGTCATTCCAAAGTATTTTCCGTACCCTTAGAAGAAACC
CTTCATAATTCTCAGCCGGCtatcctaaaaaaaaaaacggcgAAGTTTGG
AAAGTGGAATCTTAGCCCAAAAACGATTAagaatcaaattttattttcga
tttttgcccCATTTTTTCTTTGCACTTAACCGATAGTTAGTTTGCATAAG
GTCCTCTCAAAATGgagtttttaataatggttCGGCAGAACAGTTTACGT
CTACAGATTAGTCCAAATAAATACCACGGCCGAACTGAAAGTCTGAATTT
ACAGGTCAAGTTCTTCTAAACAAAAAATAGAATCTCGAGCAAAATTTATT
ATTGGACTATAGTGAATATAttgtaaatataaaaaacattaaGTTATTTA
TAATATTAATCATTGTtataaaataaattgaaaaataaagtatGTTAATA
ATGCAATGTATTTACCCTTTTTACTTTAATCGAA
Run BLAST on NCBI

protein sequence of TCONS_00029271-protein

>TCONS_00029271-protein ID=TCONS_00029271-protein|Name=TCONS_00029271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MGWMIKSHTIIFTICILATCLICRTDGKGKQGIRMHLCGAEFVKWWTITC
RIKQKHNYITKKEEITLGSNKARQFLMLPTRKFKVARTQNAQEECCNEGC
TVREIIGYNC
Run BLAST on NCBI

transcript from alignment at sc0000735:35612..37987-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029271 ID=TCONS_00029271|Name=TCONS_00029271|organism=Clytia hemisphaerica|type=transcript|length=2376bp|location=Sequence derived from alignment at sc0000735:35612..37987- (Clytia hemisphaerica)
TTTTGGTGAACCTTTAAGTTATTCTACAGACAAAAGTAAGCCAACAAGTT
ACGAAAGCTCACAGCATATTATTTGAGGAGGGAGAAAGGTAAAGGTCGCT
TATAAAAGGTTTGACAATATGGTACATTTTATTGAGTCTTGCTGTGATTT
CTATCTTCATCATTTTTTAATATTTTGATAAATTCAACTAAAGCAAGGAA
AGGATTTGTAATGTAGGTAAAACTGTCTTATTTTTTATAAAGATTTAGAT
TTTTCTAAAAATAAAGCGATTGAAACCTTTAAGATTTTAATAGCCGGCAT
ATTAAGTTTGCAAAGAAAAGAACGATAAATGAAGGGAGGGAAAAATAGAT
TTTTTTCTATGAAAGAAAACAGTATGTATTTTCAAATTTAGCCCAAAATA
AAAATATTTTTCTTCAAAATATATAGTTCGTGTCAAACCTTGTAGTAACT
GTCAATATTTCTTGTCATACAGGAAACGCATGCTAAGAATCTATCAAGAT
CTTTTCAAGGTTTAGCAAAAGCAAAGACTTGCAGTCAAAACGTCTAAAAT
ACGAGATAATCATCTTTACATACTGGCGTTTCTTGCATGGGCTGGGTAAG
GGTCCTGAAGTAATAAAGAGAGAGCAGAATTTATGATATCCATGACGTAA
TATTTCATACAGAAGCACCCGACACAGCCCGGGTGTTTACTACTAGTTTT
ATTGTTTAAATTCAAAATGAGTGGGAAACACCCAGGCTTTTTTGGGCGCT
TCCGTATACAACATTACGTCATGAATAACTCATTTTAAATAGTGATGTCC
TGTTAGATCTGTATAACAAGACCTATAATTTAGGCTGTCATATTTCTGTT
TTGCTTGCCGAAGAAAAAATATTCATTTTATTGTTATTTTCTTTATTTTA
GATGATAAAGTCTCACACAATAATATTTACAATCTGTATTTTGGCAACTT
GTTTAATTTGCCGAACAGATGGGAAAGGAAAGCAAGGTATTCGAATGCAT
TTATGTGGAGCTGAATTTGTGAAATGGTGGACAATTACATGCAGAATAAA
GCAAAAACATAATTACATAACCAAGAAAGAAGGTAAATATAATAATCATA
ATCGTATAATAACCACTCACCCGTTACTTCTTCTAATTTGAAGATACCAG
GGCCACAAACCTAGAAAACTTTTTCGTTCAGTGTGCAATAACAAAGGTTG
ATCGTCTACAGGCTACTACAAAGGGGTTTGGGTACAGTGGAGTCATCTCC
ATAACTTGAACACGCACAGGGAACTTAAAATTCACGCAGATTACGCCAAT
TCTTTTTCAGATTTCACGCCATTATAGGCCTGAGAAGTATGATTCACATG
AACAGGCCTTACGGGATTTATAACTGAAAACTTTGTCTTTATAAAGGACA
AAAGTACCAAAAATATAGTGAATAAAAGTTTGTCCAATCACCAATCACTA
GGGGCTTCCTTTAACTTATCACAAGCATCTGCCTGTAAAACATCATGTTA
ATATAACACAGTCTCGCTTTTCTTTTCTCCATAGAGATAACACTGGGATC
GAATAAAGCCAGGCAATTTTTGATGTTACCAACCCGAAAGTTTAAAGTGG
CTCGAACTCAGAATGCTCAAGAAGAATGTTGCAATGAAGGCTGTACCGTA
CGAGAAATCATTGGATATAACTGCTAATGGATGGACAAAAAGACTAATAG
TAATAGCGGATAATAAAAATTAACAAATTTCCCTGTTCGAGCATATCAAA
ATTCAAAATAACTTTTAGAAAGACAAAGTTTTGAATGAGACTTTGAGCCT
CGATAAGTTCGTTTCCAACATCAACTGTTTTTGGTAAGTTTCCACTACCT
ACCACTTTTTAGCGGAAAAACAGCACTCTTCCGAAAAGTCAACTGGTTTC
TTTAGTCATTCCAAAGTATTTTCCGTACCCTTAGAAGAAACCCTTCATAA
TTCTCAGCCGGCTATCCTAAAAAAAAAAACGGCGAAGTTTGGAAAGTGGA
ATCTTAGCCCAAAAACGATTAAGAATCAAATTTTATTTTCGATTTTTGCC
CCATTTTTTCTTTGCACTTAACCGATAGTTAGTTTGCATAAGGTCCTCTC
AAAATGGAGTTTTTAATAATGGTTCGGCAGAACAGTTTACGTCTACAGAT
TAGTCCAAATAAATACCACGGCCGAACTGAAAGTCTGAATTTACAGGTCA
AGTTCTTCTAAACAAAAAATAGAATCTCGAGCAAAATTTATTATTGGACT
ATAGTGAATATATTGTAAATATAAAAAACATTAAGTTATTTATAATATTA
ATCATTGTTATAAAATAAATTGAAAAATAAAGTATGTTAATAATGCAATG
TATTTACCCTTTTTACTTTAATCGAA

Coding sequence (CDS) from alignment at sc0000735:35612..37987-

>TCONS_00029271 ID=TCONS_00029271|Name=TCONS_00029271|organism=Clytia hemisphaerica|type=CDS|length=999bp|location=Sequence derived from alignment at sc0000735:35612..37987- (Clytia hemisphaerica)
AGATAACACTGGGATCGAATAAAGCCAGGCAATTTTTGATGTTACCAACC
CGAAAGTTTAAAGTGGCTCGAACTCAGAATGCTCAAGAAGAATGTTGCAA
TGAAGGCTGTACCGTACGAGAAATCATTGGATATAACTGCTAAATGATAA
AGTCTCACACAATAATATTTACAATCTGTATTTTGGCAACTTGTTTAATT
TGCCGAACAGATGGGAAAGGAAAGCAAGGTATTCGAATGCATTTATGTGG
AGCTGAATTTGTGAAATGGTGGACAATTACATGCAGAATAAAGCAAAAAC
ATAATTACATAACCAAGAAAGAAGATGGGCTGGAGATAACACTGGGATCG
AATAAAGCCAGGCAATTTTTGATGTTACCAACCCGAAAGTTTAAAGTGGC
TCGAACTCAGAATGCTCAAGAAGAATGTTGCAATGAAGGCTGTACCGTAC
GAGAAATCATTGGATATAACTGCTAAATGATAAAGTCTCACACAATAATA
TTTACAATCTGTATTTTGGCAACTTGTTTAATTTGCCGAACAGATGGGAA
AGGAAAGCAAGGTATTCGAATGCATTTATGTGGAGCTGAATTTGTGAAAT
GGTGGACAATTACATGCAGAATAAAGCAAAAACATAATTACATAACCAAG
AAAGAAGATGGGCTGGAGATAACACTGGGATCGAATAAAGCCAGGCAATT
TTTGATGTTACCAACCCGAAAGTTTAAAGTGGCTCGAACTCAGAATGCTC
AAGAAGAATGTTGCAATGAAGGCTGTACCGTACGAGAAATCATTGGATAT
AACTGCTAAATGATAAAGTCTCACACAATAATATTTACAATCTGTATTTT
GGCAACTTGTTTAATTTGCCGAACAGATGGGAAAGGAAAGCAAGGTATTC
GAATGCATTTATGTGGAGCTGAATTTGTGAAATGGTGGACAATTACATGC
AGAATAAAGCAAAAACATAATTACATAACCAAGAAAGAAGATGGGCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016678XLOC_016678Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029271-proteinTCONS_00029271-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029271-exon-sc0000735-1575043694:37900..37987TCONS_00029271-exon-sc0000735-1575043694:37900..37987Clytia hemisphaericaexon
TCONS_00029271-exon-sc0000735-1575043694:37393..37515TCONS_00029271-exon-sc0000735-1575043694:37393..37515Clytia hemisphaericaexon
TCONS_00029271-exon-sc0000735-1575043694:36906..37086TCONS_00029271-exon-sc0000735-1575043694:36906..37086Clytia hemisphaericaexon
TCONS_00029271-exon-sc0000735-1575043694:35612..36453TCONS_00029271-exon-sc0000735-1575043694:35612..36453Clytia hemisphaericaexon
TCONS_00029271-exon-sc0000735-1510915933:37900..37987TCONS_00029271-exon-sc0000735-1510915933:37900..37987Clytia hemisphaericaexon
TCONS_00029271-exon-sc0000735-1510915933:37393..37515TCONS_00029271-exon-sc0000735-1510915933:37393..37515Clytia hemisphaericaexon
TCONS_00029271-exon-sc0000735-1510915933:36906..37086TCONS_00029271-exon-sc0000735-1510915933:36906..37086Clytia hemisphaericaexon
TCONS_00029271-exon-sc0000735-1510915933:35612..36453TCONS_00029271-exon-sc0000735-1510915933:35612..36453Clytia hemisphaericaexon
TCONS_00029271-exon-sc0000735-1491911889:37900..37987TCONS_00029271-exon-sc0000735-1491911889:37900..37987Clytia hemisphaericaexon
TCONS_00029271-exon-sc0000735-1491911889:37393..37515TCONS_00029271-exon-sc0000735-1491911889:37393..37515Clytia hemisphaericaexon
TCONS_00029271-exon-sc0000735-1491911889:36906..37086TCONS_00029271-exon-sc0000735-1491911889:36906..37086Clytia hemisphaericaexon
TCONS_00029271-exon-sc0000735-1491911889:35612..36453TCONS_00029271-exon-sc0000735-1491911889:35612..36453Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000735supercontigsc0000735:35612..37987 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.14003	0	4.09398	5.45748	12.9794	5.59989	8.97716	15.8135	2.92349	1.81687	0.628931	0.928041	5.89824	6.0455	9.97111	7.81591	30.5538	26.0028	3.29393	6.24189	8.84452	9.02117	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016179Insulin-like
Vocabulary: Molecular Function
TermDefinition
GO:0005179hormone activity
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region
molecular_function GO:0005179 hormone activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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