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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029296 ID=TCONS_00029296|Name=TCONS_00029296|organism=Clytia hemisphaerica|type=transcript|length=1894bp
CACGAAAAGAACGATACTGTATCCTTATTACGTGATTTAAAGTGACGTGA
CCTAAGCTAAGAGGTTAGACTTTATTCAACTCTCCAATGATCGTGCTTGT
TTTATGTGACGAtccattttttcacaagtttgtttTTGAAAGCATGGTGC
TAATGGAGAAAGTCCACGGAATGAAAATATCTTTTTGATTAGAAACTATG
TTTAGGACTTAAGCAAACCTCCCATAAGAACGAGACTGAGTCTGAGAGTC
TGACTGGTATACAATTTAGGATACCTTTGAAACCTTAGGTGTGTAGACTC
TAGACGCAAGGGTATACCTTGGATTTCATGTCgatatttctaattttcta
agcTCGCTCTTAAGAATTCTTTAGACTTTAAATCACATCATATTTTTGAC
AGTTCTTACAGCGAATTTTTCGTTATAATAGTTACGTGACAAAATATGGC
CTACCACgaaattctaaatatttttagtaGTATCATAATATAGTATTTTT
TCTTGTNATATGGCCTACCACgaaattctaaatatttttagtaGTATCAT
AATATAgtattttttcttgtttttcaaaatgtaaaacACAGATTCTGTCT
AAATGAAATCCTTTATAATTTTAAGCTGACGTACGTGACGCAACAGGTCC
ATAGCTTGAAGTTTATAGTGATCTTTTTAATGTTCATCAAACGTACAAAA
TGGAACGTTTTGTGCATGGTGTACACTTAAAAAGTCTTAGTCAGGAAAgc
caaaattttatttataaagcCGACCTGTTAGATATTTTAAGgctgatttg
atttgatttatgaaaaaaaacatgtttttatctgaattaaaaatctaaaa
ttgctGTATTTTTAGCTCTGTATAGATTTAAAGAGTACTTCTCTTAAGTA
AATCAATTTTGCGGCTAGGATTGAACTTCGAACGTCAATGAAAATCAGGG
CGaagatttttaaagtaaaatttaattTCGAACTAATGAGCAATTCATGT
GGGGAAAAGGCATACAATTACCTGTGCTTTACGTCCTAAATAAAGTTTAT
CTACTGCTCATATCTATCAGAAAAATATGCGAtaagctttttgataattt
ttgttgttttcaagtGAAGTTTGTAGATTACTCATTAATTTCGATCGAGC
CTTTACGTAAGACGTATTTTTGCTTTGAGGAAGGATTTCTCTGAAAAACC
AAGCCTACGACACATTTCATGAATCATAGCACACCTTTTTCATAGTAAAA
CTTTGAAGTTTATACCAACTGACTACACACACTCTTTttcttatataaga
acaattttacaagaacagcGAGACTCGAAAtcgccaaaaaaataaaacaa
tttaagaacaatgctgagcctggaattactcaatttcaagaaatttagtG
GTCAAAGTATTAATGATTTGGCGCAAATCCTAAAATACCTCAGTTTCACC
CTATAAATATGCTCAAAGTTCCAAAAAAATAGGAACAGCGAGTCTCATCA
AaagtttactggttcttataaaaaagttcatTTCAGCTCATGGCGCGGAC
TTTTTAGGCCAAATCTTTTAGGACGCTTTGTGCTCTTCAGCGCCACAACA
TTGCTTAGCTAGGTCTGTTTCTTTTTAGTAAAACGAAATATCGACCTAAA
TTAATAGGTGGATTTTAGGATAAATTTTTTGCACATATACATGCgttatt
ttttaatataaaaatttttgttttctttttcttcaacatCAATATCatta
aattataattatttGTATATTAAAAATGATGACAATGAACATTATTTTGT
CTCCAACTGTAAAAttgatgataattttttttggtaaaataatgAATTGG
AAAAAAACACAGAATAAtggaaatcaaatttttttgtgaattaa Run BLAST on NCBI transcript from alignment at sc0000735:161988..163881 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029296 ID=TCONS_00029296|Name=TCONS_00029296|organism=Clytia hemisphaerica|type=transcript|length=1894bp|location=Sequence derived from alignment at sc0000735:161988..163881 (Clytia hemisphaerica)
ttaattcacaaaaaaatttgatttccaTTATTCTGTGTTTTTTTCCAATT
cattattttaccaaaaaaaattatcatcaaTTTTACAGTTGGAGACAAAA
TAATGTTCATTGTCATCATTTTTAATATACaaataattataatttaatGA
TATTGatgttgaagaaaaagaaaacaaaaatttttatattaaaaaataac
GCATGTATATGTGCAAAAAATTTATCCTAAAATCCACCTATTAATTTAGG
TCGATATTTCGTTTTACTAAAAAGAAACAGACCTAGCTAAGCAATGTTGT
GGCGCTGAAGAGCACAAAGCGTCCTAAAAGATTTGGCCTAAAAAGTCCGC
GCCATGAGCTGAAatgaacttttttataagaaccagtaaacttTTGATGA
GACTCGCTGTTCCTATTTTTTTGGAACTTTGAGCATATTTATAGGGTGAA
ACTGAGGTATTTTAGGATTTGCGCCAAATCATTAATACTTTGACCactaa
atttcttgaaattgagtaattccaggctcagcattgttcttaaattgttt
tatttttttggcgaTTTCGAGTCTCgctgttcttgtaaaattgttcttat
ataagaaAAAGAGTGTGTGTAGTCAGTTGGTATAAACTTCAAAGTTTTAC
TATGAAAAAGGTGTGCTATGATTCATGAAATGTGTCGTAGGCTTGGTTTT
TCAGAGAAATCCTTCCTCAAAGCAAAAATACGTCTTACGTAAAGGCTCGA
TCGAAATTAATGAGTAATCTACAAACTTCacttgaaaacaacaaaaatta
tcaaaaagcttaTCGCATATTTTTCTGATAGATATGAGCAGTAGATAAAC
TTTATTTAGGACGTAAAGCACAGGTAATTGTATGCCTTTTCCCCACATGA
ATTGCTCATTAGTTCGAaattaaattttactttaaaaatcttCGCCCTGA
TTTTCATTGACGTTCGAAGTTCAATCCTAGCCGCAAAATTGATTTACTTA
AGAGAAGTACTCTTTAAATCTATACAGAGCTAAAAATACagcaattttag
atttttaattcagataaaaacatgttttttttcataaatcaaatcaaatc
agcCTTAAAATATCTAACAGGTCGgctttataaataaaattttggcTTTC
CTGACTAAGACTTTTTAAGTGTACACCATGCACAAAACGTTCCATTTTGT
ACGTTTGATGAACATTAAAAAGATCACTATAAACTTCAAGCTATGGACCT
GTTGCGTCACGTACGTCAGCTTAAAATTATAAAGGATTTCATTTAGACAG
AATCTGTgttttacattttgaaaaacaagaaaaaatacTATATTATGATA
CtactaaaaatatttagaatttcGTGGTAGGCCATATNACAAGAAAAAAT
ACTATATTATGATACtactaaaaatatttagaatttcGTGGTAGGCCATA
TTTTGTCACGTAACTATTATAACGAAAAATTCGCTGTAAGAACTGTCAAA
AATATGATGTGATTTAAAGTCTAAAGAATTCTTAAGAGCGAgcttagaaa
attagaaatatcGACATGAAATCCAAGGTATACCCTTGCGTCTAGAGTCT
ACACACCTAAGGTTTCAAAGGTATCCTAAATTGTATACCAGTCAGACTCT
CAGACTCAGTCTCGTTCTTATGGGAGGTTTGCTTAAGTCCTAAACATAGT
TTCTAATCAAAAAGATATTTTCATTCCGTGGACTTTCTCCATTAGCACCA
TGCTTTCAAaaacaaacttgtgaaaaaatggaTCGTCACATAAAACAAGC
ACGATCATTGGAGAGTTGAATAAAGTCTAACCTCTTAGCTTAGGTCACGT
CACTTTAAATCACGTAATAAGGATACAGTATCGTTCTTTTCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029296-exon-sc0000735-1491911889:161988..163881 | TCONS_00029296-exon-sc0000735-1491911889:161988..163881 | Clytia hemisphaerica | exon |
| TCONS_00029296-exon-sc0000735-1510915933:161988..163881 | TCONS_00029296-exon-sc0000735-1510915933:161988..163881 | Clytia hemisphaerica | exon |
| TCONS_00029296-exon-sc0000735-1575043694:161988..163881 | TCONS_00029296-exon-sc0000735-1575043694:161988..163881 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000735 | supercontig | sc0000735:161988..163881 . |
Blast
The following BLAST results are available for this feature:
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