TCONS_00029379 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029379
Unique NameTCONS_00029379
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length867

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029379 ID=TCONS_00029379|Name=TCONS_00029379|organism=Clytia hemisphaerica|type=transcript|length=867bp
AGGATGTCTTTAAATCACCCATAGGTAAATTTTAAACTTGGAAAACAGAT
ACAAAAGTAGAATAATGttgtttttatactttttcctTCATAAATACGGA
ATAAAAGAAAGCATGGAAGGAAAGATTGAACTTGGCAACCTTCACGTATT
CCATCCTGTCAGTACCGTCTGATCACAATCGCAAACGACATGGAAAACCA
ATGCCAACACCTGAGAAGTCGACGAACAAACAAGTCGATCAAATGTCTAT
ACGAACCAACTGGTCGTTCGGTCCTTCATATAAAACTGTATAAAGACATT
GTTTCTATACTTTTTTGCCGGACATCCTTTTATAAAATCACCAAAGAATT
CTTATCAAGGAACTGGCATCATGACCGCTATGCAATCATACACCAATCTT
GATTGTTTTACATTCACACAAACGTTTTGGTAACAAACTGGTTTCGTTTC
CCAAACAATCCTCGTTTCACAAAATGTCATGTCTACCTTCTTATCTTCAC
CATTTGAATCTACTTTACCAACTTTGTTGTTGCCTTTCAAATTAATGGAA
CTTCTTGGCTGTTCAATCTCCTTATTGTTGAGTCTGTTTACAAATGCTGC
AGAGTGTTGCATCGATGAGTTTTGGGATACGTTTAAATCAGTAtctgttt
ttctattgttttcgctATCAGATAACAAGGGTTTCGGTGCAGTCTTCTGG
CATAATGTGAATAAAAACAAAGCAATCAATAACACTTCTTTCATGGTGGC
AATGTTGTGATGTGTGAATGGTATCAAATAATTCTATGCTCCCAAAGTAA
AGTAGTACCGTACTAGTATGGACACTACCAAGATTTGCCTCTGGATTCAG
ATCGTTTTTATTTTCCG
Run BLAST on NCBI

protein sequence of TCONS_00029379-protein

>TCONS_00029379-protein ID=TCONS_00029379-protein|Name=TCONS_00029379-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MKEVLLIALFLFTLCQKTAPKPLLSDSENNRKTDTDLNVSQNSSMQHSAA
FVNRLNNKEIEQPRSSINLKGNNKVGKVDSNGEDKKVDMTFCETRIVWET
KPVCYQNVCVNVKQSRLVYDCIAVMMPVP
Run BLAST on NCBI

transcript from alignment at sc0000744:78407..79273

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029379 ID=TCONS_00029379|Name=TCONS_00029379|organism=Clytia hemisphaerica|type=transcript|length=867bp|location=Sequence derived from alignment at sc0000744:78407..79273 (Clytia hemisphaerica)
CGGAAAATAAAAACGATCTGAATCCAGAGGCAAATCTTGGTAGTGTCCAT
ACTAGTACGGTACTACTTTACTTTGGGAGCATAGAATTATTTGATACCAT
TCACACATCACAACATTGCCACCATGAAAGAAGTGTTATTGATTGCTTTG
TTTTTATTCACATTATGCCAGAAGACTGCACCGAAACCCTTGTTATCTGA
TagcgaaaacaatagaaaaacagaTACTGATTTAAACGTATCCCAAAACT
CATCGATGCAACACTCTGCAGCATTTGTAAACAGACTCAACAATAAGGAG
ATTGAACAGCCAAGAAGTTCCATTAATTTGAAAGGCAACAACAAAGTTGG
TAAAGTAGATTCAAATGGTGAAGATAAGAAGGTAGACATGACATTTTGTG
AAACGAGGATTGTTTGGGAAACGAAACCAGTTTGTTACCAAAACGTTTGT
GTGAATGTAAAACAATCAAGATTGGTGTATGATTGCATAGCGGTCATGAT
GCCAGTTCCTTGATAAGAATTCTTTGGTGATTTTATAAAAGGATGTCCGG
CAAAAAAGTATAGAAACAATGTCTTTATACAGTTTTATATGAAGGACCGA
ACGACCAGTTGGTTCGTATAGACATTTGATCGACTTGTTTGTTCGTCGAC
TTCTCAGGTGTTGGCATTGGTTTTCCATGTCGTTTGCGATTGTGATCAGA
CGGTACTGACAGGATGGAATACGTGAAGGTTGCCAAGTTCAATCTTTCCT
TCCATGCTTTCTTTTATTCCGTATTTATGAaggaaaaagtataaaaacaa
CATTATTCTACTTTTGTATCTGTTTTCCAAGTTTAAAATTTACCTATGGG
TGATTTAAAGACATCCT

Coding sequence (CDS) from alignment at sc0000744:78407..79273

>TCONS_00029379 ID=TCONS_00029379|Name=TCONS_00029379|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at sc0000744:78407..79273 (Clytia hemisphaerica)
ATGAAAGAAGTGTTATTGATTGCTTTGTTTTTATTCACATTATGCCAGAA
GACTGCACCGAAACCCTTGTTATCTGATagcgaaaacaatagaaaaacag
aTACTGATTTAAACGTATCCCAAAACTCATCGATGCAACACTCTGCAGCA
TTTGTAAACAGACTCAACAATAAGGAGATTGAACAGCCAAGAAGTTCCAT
TAATTTGAAAGGCAACAACAAAGTTGGTAAAGTAGATTCAAATGGTGAAG
ATAAGAAGGTAGACATGACATTTTGTGAAACGAGGATTGTTTGGGAAACG
AAACCAGTTTGTTACCAAAACGTTTGTGTGAATGTAAAACAATCAAGATT
GGTGTATGATTGCATAGCGGTCATGATGCCAGTTCCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016755XLOC_016755Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029379-proteinTCONS_00029379-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029379-exon-sc0000744-1491911889:78407..79273TCONS_00029379-exon-sc0000744-1491911889:78407..79273Clytia hemisphaericaexon
TCONS_00029379-exon-sc0000744-1510915933:78407..79273TCONS_00029379-exon-sc0000744-1510915933:78407..79273Clytia hemisphaericaexon
TCONS_00029379-exon-sc0000744-1575043694:78407..79273TCONS_00029379-exon-sc0000744-1575043694:78407..79273Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000744supercontigsc0000744:78407..79273 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0539175	0	0.183145	0	0.145422	0.229828	0.554556	0.389377	0.636094	1.57581	0.710134	0.430905	3.72932	1.60131	5.17413	12.7809	0	1.2031	0.229262	1.97923	0	0.0762824	0.123642	0.28102	0.578889	2.94487	5.76667	3.78729	109.874	67.069
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029379 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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